RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 SERF1AO75920 110 aa13.47□□□□□ -0.25
CLN3-204ENST00000357857 HIST3H2BBQ8N257 126 aa13.47□□□□□ -0.25
CLN3-204ENST00000357857 MRPL16Q9NX20 251 aaKnown RBP13.47□□□□□ -0.25
CLN3-204ENST00000357857 TRAV26-2A0A0B4J265 109 aa13.46□□□□□ -0.25
CLN3-204ENST00000357857 A8MZ25 164 aa13.46□□□□□ -0.25
CLN3-204ENST00000357857 LINC00310P59036 64 aa13.46□□□□□ -0.25
CLN3-204ENST00000357857 LINC00315P59091 139 aa13.46□□□□□ -0.25
CLN3-204ENST00000357857 PDZD11Q5EBL8 140 aa13.46□□□□□ -0.25
CLN3-204ENST00000357857 POM121L12Q8N7R1 296 aa13.46□□□□□ -0.25
CLN3-204ENST00000357857 SAMD10Q9BYL1 202 aa13.46□□□□□ -0.25
CLN3-204ENST00000357857 A8MWV9 139 aa13.45□□□□□ -0.26
CLN3-204ENST00000357857 GAS8-AS1O95177 125 aa13.45□□□□□ -0.26
CLN3-204ENST00000357857 NPYP01303 97 aa13.45□□□□□ -0.26
CLN3-204ENST00000357857 CRYGDP07320 174 aa13.45□□□□□ -0.26
CLN3-204ENST00000357857 DEFB135Q30KP9 77 aa13.45□□□□□ -0.26
CLN3-204ENST00000357857 FAM74A4Q5TZK3 123 aa13.45□□□□□ -0.26
CLN3-204ENST00000357857 LAMTOR2Q9Y2Q5 125 aa13.45□□□□□ -0.26
CLN3-204ENST00000357857 NACAE9PAV3 2078 aa13.45□□□□□ -0.26
CLN3-204ENST00000357857 PLAC8L1A1L4L8 177 aa13.44□□□□□ -0.26
CLN3-204ENST00000357857 NUPR1O60356 82 aa13.44□□□□□ -0.26
CLN3-204ENST00000357857 GATA1P15976 413 aaPredicted RBP13.44□□□□□ -0.26
CLN3-204ENST00000357857 DAZ2Q13117 558 aaKnown RBP13.44□□□□□ -0.26
CLN3-204ENST00000357857 RASL10AQ92737 203 aa13.44□□□□□ -0.26
CLN3-204ENST00000357857 NDUFAF3Q9BU61 184 aa13.44□□□□□ -0.26
CLN3-204ENST00000357857 SMIM9A6NGZ8 99 aa13.44□□□□□ -0.26
CLN3-204ENST00000357857 S100A2P29034 98 aa13.44□□□□□ -0.26
CLN3-204ENST00000357857 X6R8D5 127 aa13.44□□□□□ -0.26
CLN3-204ENST00000357857 TRGV1A0A0A0MS02 117 aa13.43□□□□□ -0.26
CLN3-204ENST00000357857 TNFRSF6BO95407 300 aa13.43□□□□□ -0.26
CLN3-204ENST00000357857 ESDP10768 282 aa13.43□□□□□ -0.26
CLN3-204ENST00000357857 NIT1Q86X76 327 aa13.43□□□□□ -0.26
CLN3-204ENST00000357857 NOP10Q9NPE3 64 aaKnown RBP13.43□□□□□ -0.26
CLN3-204ENST00000357857 F5H697 171 aa13.42□□□□□ -0.26
CLN3-204ENST00000357857 LGALS9BQ3B8N2 356 aa13.42□□□□□ -0.26
CLN3-204ENST00000357857 NRACQ8N912 160 aa13.42□□□□□ -0.26
CLN3-204ENST00000357857 IFITM10A6NMD0 228 aa13.42□□□□□ -0.26
CLN3-204ENST00000357857 ZNF56Q15929 161 aa13.42□□□□□ -0.26
CLN3-204ENST00000357857 SUMO4Q6EEV6 95 aa13.42□□□□□ -0.26
CLN3-204ENST00000357857 RNASEKQ6P5S7 137 aaKnown RBP13.42□□□□□ -0.26
CLN3-204ENST00000357857 Q6ZWC4 215 aa13.42□□□□□ -0.26
CLN3-204ENST00000357857 OVOL2Q9BRP0 275 aa13.42□□□□□ -0.26
CLN3-204ENST00000357857 MAP1LC3AQ9H492 121 aa13.42□□□□□ -0.26
CLN3-204ENST00000357857 LOC389332A0A1B0GUA5 103 aa13.41□□□□□ -0.26
CLN3-204ENST00000357857 RS1O15537 224 aa13.41□□□□□ -0.26
CLN3-204ENST00000357857 CFAP126Q5VTH2 177 aa13.41□□□□□ -0.26
CLN3-204ENST00000357857 PRSS3P2Q8NHM4 247 aa13.41□□□□□ -0.26
CLN3-204ENST00000357857 URB1-AS1Q96HZ7 61 aa13.41□□□□□ -0.26
CLN3-204ENST00000357857 Q6ZTI0 123 aa13.4□□□□□ -0.26
CLN3-204ENST00000357857 OR11H2Q8NH07 326 aa13.4□□□□□ -0.26
CLN3-204ENST00000357857 RNF183Q96D59 192 aa13.4□□□□□ -0.26
CLN3-204ENST00000357857 DNAH3Q8TD57 4116 aa13.4□□□□□ -0.26
CLN3-204ENST00000357857 LINC00614P0C842 121 aa13.39□□□□□ -0.27
CLN3-204ENST00000357857 UFSP1Q6NVU6 142 aa13.39□□□□□ -0.27
CLN3-204ENST00000357857 CHCHD1Q96BP2 118 aaKnown RBP13.39□□□□□ -0.27
CLN3-204ENST00000357857 HIST1H2BLQ99880 126 aa13.39□□□□□ -0.27
CLN3-204ENST00000357857 RHODO00212 210 aa13.39□□□□□ -0.27
CLN3-204ENST00000357857 PPP1R17O96001 155 aa13.39□□□□□ -0.27
CLN3-204ENST00000357857 FABP4P15090 132 aa13.39□□□□□ -0.27
CLN3-204ENST00000357857 IFI27P40305 119 aaPredicted RBP13.39□□□□□ -0.27
CLN3-204ENST00000357857 FA2HQ7L5A8 372 aa13.39□□□□□ -0.27
CLN3-204ENST00000357857 TMEM18Q96B42 140 aa13.39□□□□□ -0.27
CLN3-204ENST00000357857 RPL39LQ96EH5 51 aaKnown RBP13.39□□□□□ -0.27
CLN3-204ENST00000357857 IGHV3-73A0A0B4J1V6 119 aa13.38□□□□□ -0.27
CLN3-204ENST00000357857 HSBP1O75506 76 aa13.38□□□□□ -0.27
CLN3-204ENST00000357857 EMP1P54849 157 aa13.38□□□□□ -0.27
CLN3-204ENST00000357857 KPRPQ5T749 579 aaPredicted RBP13.38□□□□□ -0.27
CLN3-204ENST00000357857 AKR1D1P51857 326 aa13.37□□□□□ -0.27
CLN3-204ENST00000357857 OR4C5Q8NGB2 326 aa13.37□□□□□ -0.27
CLN3-204ENST00000357857 PRSS47A8MTI9 375 aa13.36□□□□□ -0.27
CLN3-204ENST00000357857 PMCHP20382 165 aa13.36□□□□□ -0.27
CLN3-204ENST00000357857 ZFP2Q6ZN57 461 aa13.36□□□□□ -0.27
CLN3-204ENST00000357857 TRAV4A0A0B4J268 109 aa13.36□□□□□ -0.27
CLN3-204ENST00000357857 GAGE12BA1L429 117 aa13.36□□□□□ -0.27
CLN3-204ENST00000357857 M0QY20 66 aa13.36□□□□□ -0.27
CLN3-204ENST00000357857 GAGE7O76087 117 aa13.36□□□□□ -0.27
CLN3-204ENST00000357857 GAGE12FP0CL80 117 aa13.36□□□□□ -0.27
CLN3-204ENST00000357857 GAGE12GP0CL81 117 aa13.36□□□□□ -0.27
CLN3-204ENST00000357857 GAGE12IP0CL82 117 aa13.36□□□□□ -0.27
CLN3-204ENST00000357857 AMTP48728 403 aa13.36□□□□□ -0.27
CLN3-204ENST00000357857 C20orf78Q9BR46 151 aa13.36□□□□□ -0.27
CLN3-204ENST00000357857 NXT2Q9NPJ8 142 aaKnown RBP13.36□□□□□ -0.27
CLN3-204ENST00000357857 AP5S1Q9NUS5 200 aa13.36□□□□□ -0.27
CLN3-204ENST00000357857 MIFP14174 115 aa13.35□□□□□ -0.27
CLN3-204ENST00000357857 SUMO2P61956 95 aaKnown RBP13.35□□□□□ -0.27
CLN3-204ENST00000357857 FAM19A2Q8N3H0 131 aa13.35□□□□□ -0.27
CLN3-204ENST00000357857 EDA2RQ9HAV5 297 aa13.35□□□□□ -0.27
CLN3-204ENST00000357857 IGHV4-28A0A0C4DH34 117 aa13.34□□□□□ -0.27
CLN3-204ENST00000357857 H7C1H1 209 aa13.34□□□□□ -0.27
CLN3-204ENST00000357857 PRB2P02812 416 aaPredicted RBP13.34□□□□□ -0.27
CLN3-204ENST00000357857 Q8N8P6 123 aa13.34□□□□□ -0.27
CLN3-204ENST00000357857 PACRGQ96M98 296 aaPredicted RBP13.34□□□□□ -0.27
CLN3-204ENST00000357857 DNHD1Q96M86 4753 aa13.34□□□□□ -0.27
CLN3-204ENST00000357857 TRGV2A0A075B6R0 118 aa13.33□□□□□ -0.27
CLN3-204ENST00000357857 ZNF479Q96JC4 524 aa13.33□□□□□ -0.27
CLN3-204ENST00000357857 SMIM2Q9BVW6 85 aa13.33□□□□□ -0.27
CLN3-204ENST00000357857 ST20Q9HBF5 79 aa13.33□□□□□ -0.27
CLN3-204ENST00000357857 TP53TG1Q9Y2A0 90 aa13.33□□□□□ -0.27
CLN3-204ENST00000357857 IGLV2-18A0A075B6J9 118 aa13.33□□□□□ -0.28
CLN3-204ENST00000357857 Q8NAQ8 132 aa13.33□□□□□ -0.28
CLN3-204ENST00000357857 OR10D4PQ8NGN7 298 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 134.9 ms