RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 IGHV3-16A0A0C4DH30 117 aa16.19■□□□□ 0.18
SHMT1-202ENST00000352886 GCSHP23434 173 aa16.19■□□□□ 0.18
SHMT1-202ENST00000352886 RIPPLY3P57055 190 aa16.19■□□□□ 0.18
SHMT1-202ENST00000352886 MDFICQ9P1T7 246 aa16.19■□□□□ 0.18
SHMT1-202ENST00000352886 F5H697 171 aa16.19■□□□□ 0.18
SHMT1-202ENST00000352886 BAALCQ8WXS3 180 aa16.19■□□□□ 0.18
SHMT1-202ENST00000352886 RAB37Q96AX2 223 aa16.19■□□□□ 0.18
SHMT1-202ENST00000352886 SAP30O75446 220 aa16.18■□□□□ 0.18
SHMT1-202ENST00000352886 Q5PR19 223 aa16.18■□□□□ 0.18
SHMT1-202ENST00000352886 MAPKAPK5-AS1Q8N8E1 139 aa16.18■□□□□ 0.18
SHMT1-202ENST00000352886 C9orf85Q96MD7 179 aa16.18■□□□□ 0.18
SHMT1-202ENST00000352886 H3BUT2 72 aa16.18■□□□□ 0.18
SHMT1-202ENST00000352886 Q8N1Y9 231 aa16.18■□□□□ 0.18
SHMT1-202ENST00000352886 NAA38Q9BRA0 125 aaKnown RBP16.18■□□□□ 0.18
SHMT1-202ENST00000352886 FAM74A4Q5TZK3 123 aa16.17■□□□□ 0.18
SHMT1-202ENST00000352886 DEFB104AQ8WTQ1 72 aa16.17■□□□□ 0.18
SHMT1-202ENST00000352886 PRRC2AP48634 2157 aaKnown RBP16.17■□□□□ 0.18
SHMT1-202ENST00000352886 CIDEAO60543 219 aa16.17■□□□□ 0.18
SHMT1-202ENST00000352886 FXYD2P54710 66 aa16.17■□□□□ 0.18
SHMT1-202ENST00000352886 DEFB113Q30KQ7 82 aa16.17■□□□□ 0.18
SHMT1-202ENST00000352886 RNF152Q8N8N0 203 aa16.17■□□□□ 0.18
SHMT1-202ENST00000352886 JMJD8Q96S16 334 aa16.17■□□□□ 0.18
SHMT1-202ENST00000352886 ABCA12Q86UK0 2595 aa16.16■□□□□ 0.18
SHMT1-202ENST00000352886 POLR2KP53803 58 aaKnown RBP16.16■□□□□ 0.18
SHMT1-202ENST00000352886 RPL32P62910 135 aaKnown RBP16.16■□□□□ 0.18
SHMT1-202ENST00000352886 DEFB136Q30KP8 78 aa16.16■□□□□ 0.18
SHMT1-202ENST00000352886 TEX15Q9BXT5 2789 aa16.15■□□□□ 0.18
SHMT1-202ENST00000352886 IGHV1OR15-1A0A075B7D0 117 aa16.15■□□□□ 0.18
SHMT1-202ENST00000352886 DUSP14O95147 198 aaKnown RBP16.15■□□□□ 0.18
SHMT1-202ENST00000352886 TCTEX1D4Q5JR98 221 aa16.15■□□□□ 0.18
SHMT1-202ENST00000352886 C18orf65Q6ZTR6 163 aa16.15■□□□□ 0.18
SHMT1-202ENST00000352886 NAV2Q8IVL1 2488 aa16.15■□□□□ 0.18
SHMT1-202ENST00000352886 GAGE10A6NGK3 116 aa16.15■□□□□ 0.18
SHMT1-202ENST00000352886 PRSS29PA6NIE9 313 aa16.14■□□□□ 0.17
SHMT1-202ENST00000352886 SLURP1P55000 103 aa16.14■□□□□ 0.17
SHMT1-202ENST00000352886 FOXI2Q6ZQN5 318 aa16.14■□□□□ 0.17
SHMT1-202ENST00000352886 SYT8Q8NBV8 401 aa16.14■□□□□ 0.17
SHMT1-202ENST00000352886 CYSLTR1Q9Y271 337 aa16.14■□□□□ 0.17
SHMT1-202ENST00000352886 ZFP2Q6ZN57 461 aa16.14■□□□□ 0.17
SHMT1-202ENST00000352886 CREBBPQ92793 2442 aa16.14■□□□□ 0.17
SHMT1-202ENST00000352886 Q96MF0 132 aa16.13■□□□□ 0.17
SHMT1-202ENST00000352886 KIR2DL4Q99706 377 aa16.13■□□□□ 0.17
SHMT1-202ENST00000352886 TP53TG1Q9Y2A0 90 aa16.13■□□□□ 0.17
SHMT1-202ENST00000352886 SDHAF1A6NFY7 115 aa16.13■□□□□ 0.17
SHMT1-202ENST00000352886 VCYO14598 125 aa16.13■□□□□ 0.17
SHMT1-202ENST00000352886 SMIM13P0DJ93 91 aa16.12■□□□□ 0.17
SHMT1-202ENST00000352886 AMTNQ6UX39 209 aa16.12■□□□□ 0.17
SHMT1-202ENST00000352886 ZNF56Q15929 161 aa16.11■□□□□ 0.17
SHMT1-202ENST00000352886 CEND1Q8N111 149 aa16.11■□□□□ 0.17
SHMT1-202ENST00000352886 OR11H12B2RN74 326 aa16.11■□□□□ 0.17
SHMT1-202ENST00000352886 OR11H1Q8NG94 326 aa16.11■□□□□ 0.17
SHMT1-202ENST00000352886 OR11H2Q8NH07 326 aa16.11■□□□□ 0.17
SHMT1-202ENST00000352886 GTF2H5Q6ZYL4 71 aa16.1■□□□□ 0.17
SHMT1-202ENST00000352886 TM2D2Q9BX73 214 aa16.1■□□□□ 0.17
SHMT1-202ENST00000352886 TSHBP01222 138 aa16.1■□□□□ 0.17
SHMT1-202ENST00000352886 CRYGDP07320 174 aa16.1■□□□□ 0.17
SHMT1-202ENST00000352886 RPL39P62891 51 aaKnown RBP16.1■□□□□ 0.17
SHMT1-202ENST00000352886 LRRC75A-AS1Q8N1F1 130 aa16.1■□□□□ 0.17
SHMT1-202ENST00000352886 UFSP1Q6NVU6 142 aa16.09■□□□□ 0.17
SHMT1-202ENST00000352886 Q8N2B8 174 aa16.09■□□□□ 0.17
SHMT1-202ENST00000352886 TRBV6-5A0A0K0K1A5 114 aa16.09■□□□□ 0.17
SHMT1-202ENST00000352886 TRBV27A0A0K0K1C4 114 aa16.09■□□□□ 0.17
SHMT1-202ENST00000352886 IGIPA6NJ69 53 aa16.09■□□□□ 0.17
SHMT1-202ENST00000352886 KNCNA6PVL3 124 aa16.09■□□□□ 0.17
SHMT1-202ENST00000352886 G3V4G9 280 aa16.09■□□□□ 0.17
SHMT1-202ENST00000352886 K7ERJ3 54 aa16.08■□□□□ 0.17
SHMT1-202ENST00000352886 M0QY20 66 aa16.08■□□□□ 0.17
SHMT1-202ENST00000352886 ZNF469Q96JG9 3925 aaPredicted RBP16.08■□□□□ 0.16
SHMT1-202ENST00000352886 MYMXA0A1B0GTQ4 84 aa16.08■□□□□ 0.16
SHMT1-202ENST00000352886 A0A1W2PPM0 123 aa16.08■□□□□ 0.16
SHMT1-202ENST00000352886 ZNF876PQ49A33 203 aa16.08■□□□□ 0.16
SHMT1-202ENST00000352886 MORN3Q6PF18 240 aaPredicted RBP16.08■□□□□ 0.16
SHMT1-202ENST00000352886 DUX3Q96PT4 197 aa16.08■□□□□ 0.16
SHMT1-202ENST00000352886 NHP2Q9NX24 153 aaKnown RBP16.08■□□□□ 0.16
SHMT1-202ENST00000352886 ZNF256Q9Y2P7 627 aaPredicted RBP16.08■□□□□ 0.16
SHMT1-202ENST00000352886 LINC01549A6NIU2 74 aa16.07■□□□□ 0.16
SHMT1-202ENST00000352886 K7EP34 96 aa16.07■□□□□ 0.16
SHMT1-202ENST00000352886 DEFB131AP59861 70 aa16.07■□□□□ 0.16
SHMT1-202ENST00000352886 E9PLD3 99 aa16.07■□□□□ 0.16
SHMT1-202ENST00000352886 LINC01619G3V211 115 aa16.07■□□□□ 0.16
SHMT1-202ENST00000352886 RBMY1A1P0DJD3 496 aaKnown RBP16.07■□□□□ 0.16
SHMT1-202ENST00000352886 RBMY1CP0DJD4 496 aa16.07■□□□□ 0.16
SHMT1-202ENST00000352886 RBMY1FQ15415 496 aaKnown RBP16.07■□□□□ 0.16
SHMT1-202ENST00000352886 KHDC1LQ5JSQ8 128 aa16.06■□□□□ 0.16
SHMT1-202ENST00000352886 PRADC1Q9BSG0 188 aa16.06■□□□□ 0.16
SHMT1-202ENST00000352886 TRGV11A0A075B6L2 103 aa16.06■□□□□ 0.16
SHMT1-202ENST00000352886 TAL2Q16559 108 aa16.06■□□□□ 0.16
SHMT1-202ENST00000352886 HTN1P15515 57 aa16.05■□□□□ 0.16
SHMT1-202ENST00000352886 SAMD5Q5TGI4 173 aa16.05■□□□□ 0.16
SHMT1-202ENST00000352886 HIST1H4GQ99525 98 aa16.05■□□□□ 0.16
SHMT1-202ENST00000352886 EMP1P54849 157 aa16.05■□□□□ 0.16
SHMT1-202ENST00000352886 KRTAP1-3Q8IUG1 177 aa16.05■□□□□ 0.16
SHMT1-202ENST00000352886 PHLDA1Q8WV24 401 aaPredicted RBP16.05■□□□□ 0.16
SHMT1-202ENST00000352886 IGLV4-69A0A075B6H9 119 aa16.04■□□□□ 0.16
SHMT1-202ENST00000352886 PMVKQ15126 192 aa16.04■□□□□ 0.16
SHMT1-202ENST00000352886 TRPT1Q86TN4 253 aaKnown RBP16.04■□□□□ 0.16
SHMT1-202ENST00000352886 TMEM141Q96I45 108 aa16.04■□□□□ 0.16
SHMT1-202ENST00000352886 TIMM17AQ99595 171 aa16.04■□□□□ 0.16
SHMT1-202ENST00000352886 SPCS1Q9Y6A9 102 aa16.04■□□□□ 0.16
SHMT1-202ENST00000352886 MYO9AB2RTY4 2548 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms