RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 AP1S3Q96PC3 154 aa13.18□□□□□ -0.3
SYNE4-202ENST00000340477 SMIM7Q9BQ49 75 aa13.18□□□□□ -0.3
SYNE4-202ENST00000340477 DNAH10Q8IVF4 4471 aa13.17□□□□□ -0.3
SYNE4-202ENST00000340477 TRAV9-2A0A087WT02 112 aa13.17□□□□□ -0.3
SYNE4-202ENST00000340477 PRSS29PA6NIE9 313 aa13.17□□□□□ -0.3
SYNE4-202ENST00000340477 GZMBP10144 247 aa13.17□□□□□ -0.3
SYNE4-202ENST00000340477 CACNG7P62955 275 aa13.17□□□□□ -0.3
SYNE4-202ENST00000340477 ZNF56Q15929 161 aa13.17□□□□□ -0.3
SYNE4-202ENST00000340477 ATP6V0E2Q8NHE4 81 aa13.17□□□□□ -0.3
SYNE4-202ENST00000340477 OCC1Q8TAD7 63 aa13.17□□□□□ -0.3
SYNE4-202ENST00000340477 RPP21Q9H633 154 aaKnown RBP13.17□□□□□ -0.3
SYNE4-202ENST00000340477 LY96Q9Y6Y9 160 aa13.17□□□□□ -0.3
SYNE4-202ENST00000340477 TRAV8-6A0A0B4J262 113 aa13.16□□□□□ -0.3
SYNE4-202ENST00000340477 MUC21A0A0G2JKD1 596 aa13.16□□□□□ -0.3
SYNE4-202ENST00000340477 MUC21A0A140T8X8 626 aa13.16□□□□□ -0.3
SYNE4-202ENST00000340477 GAGE12JA6NER3 117 aa13.16□□□□□ -0.3
SYNE4-202ENST00000340477 F2Z2F3 143 aa13.16□□□□□ -0.3
SYNE4-202ENST00000340477 RTL8CO15255 209 aa13.16□□□□□ -0.3
SYNE4-202ENST00000340477 CRYGDP07320 174 aa13.16□□□□□ -0.3
SYNE4-202ENST00000340477 SSTP61278 116 aa13.16□□□□□ -0.3
SYNE4-202ENST00000340477 GAGE1Q13065 139 aa13.16□□□□□ -0.3
SYNE4-202ENST00000340477 GAGE4Q13068 117 aa13.16□□□□□ -0.3
SYNE4-202ENST00000340477 GAGE5Q13069 117 aa13.16□□□□□ -0.3
SYNE4-202ENST00000340477 GAGE13Q4V321 117 aa13.16□□□□□ -0.3
SYNE4-202ENST00000340477 NUDT10Q8NFP7 164 aa13.16□□□□□ -0.3
SYNE4-202ENST00000340477 NUDT11Q96G61 164 aa13.16□□□□□ -0.3
SYNE4-202ENST00000340477 ZNF727A8MUV8 499 aa13.15□□□□□ -0.3
SYNE4-202ENST00000340477 IGLC6P0CF74 106 aa13.15□□□□□ -0.3
SYNE4-202ENST00000340477 BTF3P20290 206 aaKnown RBP13.15□□□□□ -0.3
SYNE4-202ENST00000340477 EVI2AP22794 236 aa13.15□□□□□ -0.3
SYNE4-202ENST00000340477 RAB4BP61018 213 aa13.15□□□□□ -0.3
SYNE4-202ENST00000340477 OR10J3Q5JRS4 329 aa13.15□□□□□ -0.3
SYNE4-202ENST00000340477 Q6ZSN1 163 aa13.15□□□□□ -0.3
SYNE4-202ENST00000340477 C14orf178Q8N769 122 aaPredicted RBP13.15□□□□□ -0.3
SYNE4-202ENST00000340477 GTSF1LQ9H1H1 148 aa13.15□□□□□ -0.3
SYNE4-202ENST00000340477 FRAS1Q86XX4 4008 aa13.14□□□□□ -0.31
SYNE4-202ENST00000340477 TRBV10-1A0A0K0K1A3 114 aa13.14□□□□□ -0.31
SYNE4-202ENST00000340477 K7EN84 100 aa13.14□□□□□ -0.31
SYNE4-202ENST00000340477 K7EP13 123 aa13.14□□□□□ -0.31
SYNE4-202ENST00000340477 RNASE7Q9H1E1 156 aaKnown RBP13.14□□□□□ -0.31
SYNE4-202ENST00000340477 F5H697 171 aa13.13□□□□□ -0.31
SYNE4-202ENST00000340477 GATCO43716 136 aaKnown RBP13.13□□□□□ -0.31
SYNE4-202ENST00000340477 SRP19P09132 144 aaKnown RBP13.13□□□□□ -0.31
SYNE4-202ENST00000340477 RPL36AP83881 106 aaKnown RBP13.13□□□□□ -0.31
SYNE4-202ENST00000340477 PEA15Q15121 130 aa13.13□□□□□ -0.31
SYNE4-202ENST00000340477 WFDC10BQ8IUB3 73 aa13.13□□□□□ -0.31
SYNE4-202ENST00000340477 RPL36ALQ969Q0 106 aaKnown RBP13.13□□□□□ -0.31
SYNE4-202ENST00000340477 TRGC1P0CF51 173 aa13.12□□□□□ -0.31
SYNE4-202ENST00000340477 ERVFC1-1P60608 527 aa13.12□□□□□ -0.31
SYNE4-202ENST00000340477 RAB14P61106 215 aa13.12□□□□□ -0.31
SYNE4-202ENST00000340477 FAM74A3Q4VXF1 159 aa13.12□□□□□ -0.31
SYNE4-202ENST00000340477 LELP1Q5T871 98 aa13.12□□□□□ -0.31
SYNE4-202ENST00000340477 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.12□□□□□ -0.31
SYNE4-202ENST00000340477 KRTAP1-5Q9BYS1 174 aa13.12□□□□□ -0.31
SYNE4-202ENST00000340477 LYZL1Q6UWQ5 148 aa13.11□□□□□ -0.31
SYNE4-202ENST00000340477 FAM231DQ6ZW35 169 aa13.11□□□□□ -0.31
SYNE4-202ENST00000340477 C10orf126Q8N4M7 172 aa13.11□□□□□ -0.31
SYNE4-202ENST00000340477 SMDT1Q9H4I9 107 aa13.11□□□□□ -0.31
SYNE4-202ENST00000340477 EPPK1P58107 5090 aaKnown RBP13.11□□□□□ -0.31
SYNE4-202ENST00000340477 DNAH2Q9P225 4427 aa13.1□□□□□ -0.31
SYNE4-202ENST00000340477 A0A087WWC5 75 aa13.1□□□□□ -0.31
SYNE4-202ENST00000340477 IGHV3-38A0A0C4DH36 116 aa13.1□□□□□ -0.31
SYNE4-202ENST00000340477 MGPP08493 103 aa13.1□□□□□ -0.31
SYNE4-202ENST00000340477 DNAH10OSP0CZ25 163 aa13.1□□□□□ -0.31
SYNE4-202ENST00000340477 LINC00694P0DN24 101 aa13.1□□□□□ -0.31
SYNE4-202ENST00000340477 CTRLP40313 264 aa13.1□□□□□ -0.31
SYNE4-202ENST00000340477 A8MWL6 223 aa13.09□□□□□ -0.31
SYNE4-202ENST00000340477 WDR73Q6P4I2 378 aa13.09□□□□□ -0.31
SYNE4-202ENST00000340477 LINC01551Q86U37 167 aa13.09□□□□□ -0.31
SYNE4-202ENST00000340477 TRBV7-3A0A075B6L6 115 aa13.08□□□□□ -0.32
SYNE4-202ENST00000340477 H7C1H1 209 aa13.08□□□□□ -0.32
SYNE4-202ENST00000340477 LINC00315P59091 139 aa13.08□□□□□ -0.32
SYNE4-202ENST00000340477 CT83Q5H943 113 aa13.08□□□□□ -0.32
SYNE4-202ENST00000340477 NFE4Q86UQ8 179 aa13.08□□□□□ -0.32
SYNE4-202ENST00000340477 C15orf54Q8N8G6 183 aa13.08□□□□□ -0.32
SYNE4-202ENST00000340477 BORCS7Q96B45 105 aa13.08□□□□□ -0.32
SYNE4-202ENST00000340477 TWIST1Q15672 202 aa13.07□□□□□ -0.32
SYNE4-202ENST00000340477 TMEM241Q24JQ0 296 aa13.07□□□□□ -0.32
SYNE4-202ENST00000340477 SMIM15Q7Z3B0 74 aa13.07□□□□□ -0.32
SYNE4-202ENST00000340477 NTF3P20783 257 aa13.06□□□□□ -0.32
SYNE4-202ENST00000340477 LINC01556Q5JQF7 62 aa13.06□□□□□ -0.32
SYNE4-202ENST00000340477 OR10G8Q8NGN5 311 aa13.06□□□□□ -0.32
SYNE4-202ENST00000340477 DPH3P1Q9H4G8 78 aa13.06□□□□□ -0.32
SYNE4-202ENST00000340477 MSRB1Q9NZV6 116 aa13.06□□□□□ -0.32
SYNE4-202ENST00000340477 HECTD4Q9Y4D8 3996 aa13.06□□□□□ -0.32
SYNE4-202ENST00000340477 CNFNQ9BYD5 112 aa13.05□□□□□ -0.32
SYNE4-202ENST00000340477 OSTCQ9NRP0 149 aa13.05□□□□□ -0.32
SYNE4-202ENST00000340477 Q9UF83 564 aa13.05□□□□□ -0.32
SYNE4-202ENST00000340477 NAT8Q9UHE5 227 aa13.05□□□□□ -0.32
SYNE4-202ENST00000340477 KIF25-AS1Q9Y6Z4 181 aa13.05□□□□□ -0.32
SYNE4-202ENST00000340477 UBE2D3P61077 147 aa13.04□□□□□ -0.32
SYNE4-202ENST00000340477 UBE2D2P62837 147 aa13.04□□□□□ -0.32
SYNE4-202ENST00000340477 ADIRFQ15847 76 aa13.04□□□□□ -0.32
SYNE4-202ENST00000340477 URGCP-MRPS24S4R325 110 aa13.04□□□□□ -0.32
SYNE4-202ENST00000340477 DNAH17Q9UFH2 4485 aa13.03□□□□□ -0.32
SYNE4-202ENST00000340477 TNP2Q05952 138 aa13.03□□□□□ -0.32
SYNE4-202ENST00000340477 KCNIP4Q6PIL6 250 aa13.03□□□□□ -0.32
SYNE4-202ENST00000340477 NEXN-AS1Q8NBZ9 246 aa13.03□□□□□ -0.32
SYNE4-202ENST00000340477 TNFRSF18Q9Y5U5 241 aa13.03□□□□□ -0.32
SYNE4-202ENST00000340477 A0A1B0GVY2 172 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms