RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 C1QBP02746 253 aa8.45□□□□□ -1.06
CD44-203ENST00000278386 ARMS2P0C7Q2 107 aa8.45□□□□□ -1.06
CD44-203ENST00000278386 TPT1P13693 172 aaKnown RBP8.45□□□□□ -1.06
CD44-203ENST00000278386 UFSP1Q6NVU6 142 aa8.45□□□□□ -1.06
CD44-203ENST00000278386 BAALCQ8WXS3 180 aa8.45□□□□□ -1.06
CD44-203ENST00000278386 NKX6-2Q9C056 277 aaPredicted RBP8.45□□□□□ -1.06
CD44-203ENST00000278386 Q9UF83 564 aa8.45□□□□□ -1.06
CD44-203ENST00000278386 PHLDA3Q9Y5J5 127 aa8.45□□□□□ -1.06
CD44-203ENST00000278386 SRRM2Q9UQ35 2752 aaKnown RBP8.44□□□□□ -1.06
CD44-203ENST00000278386 IGKV2D-24A0A075B6R9 120 aa8.44□□□□□ -1.06
CD44-203ENST00000278386 MAP1LC3B2A6NCE7 125 aa8.44□□□□□ -1.06
CD44-203ENST00000278386 KRBOX1C9JBD0 128 aa8.44□□□□□ -1.06
CD44-203ENST00000278386 SMLR1H3BR10 107 aa8.44□□□□□ -1.06
CD44-203ENST00000278386 J3QL48 77 aa8.44□□□□□ -1.06
CD44-203ENST00000278386 SEC11BP0C7V7 166 aa8.44□□□□□ -1.06
CD44-203ENST00000278386 FAM162BQ5T6X4 162 aa8.44□□□□□ -1.06
CD44-203ENST00000278386 KCNIP4Q6PIL6 250 aa8.44□□□□□ -1.06
CD44-203ENST00000278386 FMC1Q96HJ9 113 aa8.44□□□□□ -1.06
CD44-203ENST00000278386 MAP1LC3BQ9GZQ8 125 aa8.44□□□□□ -1.06
CD44-203ENST00000278386 COX11Q9Y6N1 276 aa8.44□□□□□ -1.06
CD44-203ENST00000278386 A0A087WX48 190 aa8.43□□□□□ -1.06
CD44-203ENST00000278386 PLA2G1BP04054 148 aaKnown RBP8.43□□□□□ -1.06
CD44-203ENST00000278386 AKR1C3P42330 323 aa8.43□□□□□ -1.06
CD44-203ENST00000278386 ZFP82Q8N141 532 aa8.43□□□□□ -1.06
CD44-203ENST00000278386 LINC00528Q8N1L1 170 aa8.43□□□□□ -1.06
CD44-203ENST00000278386 KLK12Q9UKR0 248 aa8.43□□□□□ -1.06
CD44-203ENST00000278386 ZFP30Q9Y2G7 519 aa8.43□□□□□ -1.06
CD44-203ENST00000278386 RBFOX3A6NFN3 312 aa8.42□□□□□ -1.06
CD44-203ENST00000278386 CRIP1P50238 77 aa8.42□□□□□ -1.06
CD44-203ENST00000278386 RPL36AP83881 106 aaKnown RBP8.42□□□□□ -1.06
CD44-203ENST00000278386 LINC01620Q4KN68 170 aa8.42□□□□□ -1.06
CD44-203ENST00000278386 DNLZQ5SXM8 178 aa8.42□□□□□ -1.06
CD44-203ENST00000278386 CST9LP1Q5W188 147 aa8.42□□□□□ -1.06
CD44-203ENST00000278386 Q6ZSA8 131 aa8.42□□□□□ -1.06
CD44-203ENST00000278386 NIT1Q86X76 327 aa8.42□□□□□ -1.06
CD44-203ENST00000278386 STOML3Q8TAV4 291 aa8.42□□□□□ -1.06
CD44-203ENST00000278386 RPL36ALQ969Q0 106 aaKnown RBP8.42□□□□□ -1.06
CD44-203ENST00000278386 UBE2WQ96B02 151 aa8.42□□□□□ -1.06
CD44-203ENST00000278386 SFRP2Q96HF1 295 aa8.42□□□□□ -1.06
CD44-203ENST00000278386 LINC01559Q495D7 138 aa8.41□□□□□ -1.06
CD44-203ENST00000278386 DNAJC30Q96LL9 226 aa8.41□□□□□ -1.06
CD44-203ENST00000278386 CYTL1Q9NRR1 136 aa8.41□□□□□ -1.06
CD44-203ENST00000278386 ARPC5O15511 151 aa8.4□□□□□ -1.06
CD44-203ENST00000278386 LTAP01374 205 aa8.4□□□□□ -1.06
CD44-203ENST00000278386 ELOBQ15370 118 aa8.4□□□□□ -1.06
CD44-203ENST00000278386 ZNF56Q15929 161 aa8.4□□□□□ -1.06
CD44-203ENST00000278386 ZNF674Q2M3X9 581 aa8.4□□□□□ -1.06
CD44-203ENST00000278386 COX8CQ7Z4L0 72 aa8.4□□□□□ -1.06
CD44-203ENST00000278386 Q8N976 141 aa8.4□□□□□ -1.06
CD44-203ENST00000278386 CHCHD7Q9BUK0 85 aa8.4□□□□□ -1.06
CD44-203ENST00000278386 TRBV10-1A0A0K0K1A3 114 aa8.39□□□□□ -1.07
CD44-203ENST00000278386 CRPP02741 224 aa8.39□□□□□ -1.07
CD44-203ENST00000278386 SCXQ7RTU7 201 aa8.39□□□□□ -1.07
CD44-203ENST00000278386 TCEAL7Q9BRU2 100 aa8.39□□□□□ -1.07
CD44-203ENST00000278386 TRBV7-3A0A075B6L6 115 aa8.38□□□□□ -1.07
CD44-203ENST00000278386 TRBV6-1A0A0K0K1D8 114 aa8.38□□□□□ -1.07
CD44-203ENST00000278386 TMEM262E9PQX1 116 aa8.38□□□□□ -1.07
CD44-203ENST00000278386 FHITP49789 147 aa8.38□□□□□ -1.07
CD44-203ENST00000278386 UBE2D3P61077 147 aa8.38□□□□□ -1.07
CD44-203ENST00000278386 UBE2D2P62837 147 aa8.38□□□□□ -1.07
CD44-203ENST00000278386 RPL19P84098 196 aaKnown RBP8.38□□□□□ -1.07
CD44-203ENST00000278386 C1orf43Q9BWL3 253 aa8.38□□□□□ -1.07
CD44-203ENST00000278386 A0A1B0GV50 99 aa8.37□□□□□ -1.07
CD44-203ENST00000278386 PAGE4O60829 102 aa8.37□□□□□ -1.07
CD44-203ENST00000278386 PFDN1O60925 122 aa8.37□□□□□ -1.07
CD44-203ENST00000278386 Q0VG73 95 aa8.37□□□□□ -1.07
CD44-203ENST00000278386 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.37□□□□□ -1.07
CD44-203ENST00000278386 SCO2A0A1W2PP80 73 aa8.36□□□□□ -1.07
CD44-203ENST00000278386 C14orf177Q52M58 125 aa8.36□□□□□ -1.07
CD44-203ENST00000278386 C15orf54Q8N8G6 183 aa8.36□□□□□ -1.07
CD44-203ENST00000278386 OR10AG1Q8NH19 301 aa8.36□□□□□ -1.07
CD44-203ENST00000278386 FAM213BQ8TBF2 198 aa8.36□□□□□ -1.07
CD44-203ENST00000278386 DEFB104AQ8WTQ1 72 aa8.36□□□□□ -1.07
CD44-203ENST00000278386 TRBV6-8A0A0A6YYG3 113 aa8.35□□□□□ -1.07
CD44-203ENST00000278386 HLA-DQA1P01909 254 aa8.35□□□□□ -1.07
CD44-203ENST00000278386 ANGP03950 147 aaKnown RBP8.35□□□□□ -1.07
CD44-203ENST00000278386 RAB4BP61018 213 aa8.35□□□□□ -1.07
CD44-203ENST00000278386 MPV17L2Q567V2 206 aa8.35□□□□□ -1.07
CD44-203ENST00000278386 PRR27Q6MZM9 219 aa8.35□□□□□ -1.07
CD44-203ENST00000278386 ATRAIDQ6UW56 229 aa8.35□□□□□ -1.07
CD44-203ENST00000278386 KCNRGQ8N5I3 272 aa8.35□□□□□ -1.07
CD44-203ENST00000278386 NEXN-AS1Q8NBZ9 246 aa8.35□□□□□ -1.07
CD44-203ENST00000278386 OR10G8Q8NGN5 311 aa8.35□□□□□ -1.07
CD44-203ENST00000278386 CHCHD5Q9BSY4 110 aa8.35□□□□□ -1.07
CD44-203ENST00000278386 ZNF471Q9BX82 626 aaPredicted RBP8.35□□□□□ -1.07
CD44-203ENST00000278386 MUC21A0A0G2JKD1 596 aa8.34□□□□□ -1.07
CD44-203ENST00000278386 MUC21A0A140T8X8 626 aa8.34□□□□□ -1.07
CD44-203ENST00000278386 S100A9P06702 114 aaKnown RBP8.34□□□□□ -1.07
CD44-203ENST00000278386 SSTP61278 116 aa8.34□□□□□ -1.07
CD44-203ENST00000278386 SPANXN1Q5VSR9 72 aa8.34□□□□□ -1.07
CD44-203ENST00000278386 SFT2D1Q8WV19 159 aa8.34□□□□□ -1.07
CD44-203ENST00000278386 CHAC1Q9BUX1 264 aa8.34□□□□□ -1.07
CD44-203ENST00000278386 KRTAP29-1A8MX34 341 aaPredicted RBP8.33□□□□□ -1.08
CD44-203ENST00000278386 F5H697 171 aa8.33□□□□□ -1.08
CD44-203ENST00000278386 CXCL1P09341 107 aa8.33□□□□□ -1.08
CD44-203ENST00000278386 SMIM17P0DL12 118 aa8.33□□□□□ -1.08
CD44-203ENST00000278386 PKIAP61925 76 aa8.33□□□□□ -1.08
CD44-203ENST00000278386 BAGE2Q86Y30 109 aa8.33□□□□□ -1.08
CD44-203ENST00000278386 PKHD1L1Q86WI1 4243 aa8.33□□□□□ -1.08
CD44-203ENST00000278386 HMSDA8MTL9 139 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms