RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 NUP98P52948 1817 aa2.41□□□□□ -2.02
CCDC54-201ENST00000261058 ARHGEF5Q12774 1597 aa2.41□□□□□ -2.02
CCDC54-201ENST00000261058 MROH2BQ7Z745 1585 aa2.41□□□□□ -2.02
CCDC54-201ENST00000261058 HEATR5AQ86XA9 2040 aa2.41□□□□□ -2.02
CCDC54-201ENST00000261058 PREX1Q8TCU6 1659 aa2.41□□□□□ -2.02
CCDC54-201ENST00000261058 ROBO1Q9Y6N7 1651 aa2.41□□□□□ -2.02
CCDC54-201ENST00000261058 SIPA1L3O60292 1781 aaPredicted RBP2.41□□□□□ -2.02
CCDC54-201ENST00000261058 SCN8AQ9UQD0 1980 aa2.41□□□□□ -2.02
CCDC54-201ENST00000261058 TRAV40A0A0B4J280 105 aa2.41□□□□□ -2.02
CCDC54-201ENST00000261058 A0A1W2PQD3 144 aa2.41□□□□□ -2.02
CCDC54-201ENST00000261058 J3QLW9 94 aa2.41□□□□□ -2.02
CCDC54-201ENST00000261058 FXYD1O00168 92 aa2.41□□□□□ -2.02
CCDC54-201ENST00000261058 CCL3P10147 92 aa2.41□□□□□ -2.02
CCDC54-201ENST00000261058 RNASE2P10153 161 aaKnown RBP2.41□□□□□ -2.02
CCDC54-201ENST00000261058 FXYD7P58549 80 aa2.41□□□□□ -2.02
CCDC54-201ENST00000261058 Q1T7F1 81 aa2.41□□□□□ -2.02
CCDC54-201ENST00000261058 RPRMLQ8N4K4 120 aa2.41□□□□□ -2.02
CCDC54-201ENST00000261058 CLDND2Q8NHS1 167 aa2.41□□□□□ -2.02
CCDC54-201ENST00000261058 PPP1R1CQ8WVI7 109 aa2.41□□□□□ -2.02
CCDC54-201ENST00000261058 FAM103A1Q9BTL3 118 aaKnown RBP2.41□□□□□ -2.02
CCDC54-201ENST00000261058 MED1Q15648 1581 aaPredicted RBP2.4□□□□□ -2.02
CCDC54-201ENST00000261058 CLTCQ00610 1675 aaKnown RBP2.4□□□□□ -2.02
CCDC54-201ENST00000261058 DOCK1Q14185 1865 aa2.4□□□□□ -2.02
CCDC54-201ENST00000261058 IGLV2-18A0A075B6J9 118 aa2.4□□□□□ -2.03
CCDC54-201ENST00000261058 IGLV3-12A0A075B6K2 115 aa2.4□□□□□ -2.03
CCDC54-201ENST00000261058 C17orf51A8MQB3 221 aa2.4□□□□□ -2.03
CCDC54-201ENST00000261058 A8MWP4 228 aa2.4□□□□□ -2.03
CCDC54-201ENST00000261058 LEPROTO15243 131 aa2.4□□□□□ -2.03
CCDC54-201ENST00000261058 SH2D1AO60880 128 aa2.4□□□□□ -2.03
CCDC54-201ENST00000261058 IGKV1-16P04430 117 aa2.4□□□□□ -2.03
CCDC54-201ENST00000261058 EFNA4P52798 201 aa2.4□□□□□ -2.03
CCDC54-201ENST00000261058 DSCR4P56555 118 aaPredicted RBP2.4□□□□□ -2.03
CCDC54-201ENST00000261058 ZNF56Q15929 161 aa2.4□□□□□ -2.03
CCDC54-201ENST00000261058 DEFB121Q5J5C9 76 aa2.4□□□□□ -2.03
CCDC54-201ENST00000261058 CYP2G1PQ6ZSU1 146 aa2.4□□□□□ -2.03
CCDC54-201ENST00000261058 MIR17HGQ75NE6 70 aa2.4□□□□□ -2.03
CCDC54-201ENST00000261058 SPANXA2-OT1Q8N9U9 137 aa2.4□□□□□ -2.03
CCDC54-201ENST00000261058 SLC50A1Q9BRV3 221 aa2.4□□□□□ -2.03
CCDC54-201ENST00000261058 DYNLRB1Q9NP97 96 aa2.4□□□□□ -2.03
CCDC54-201ENST00000261058 MRPL35Q9NZE8 188 aaKnown RBP2.4□□□□□ -2.03
CCDC54-201ENST00000261058 ABRACLQ9P1F3 81 aa2.4□□□□□ -2.03
CCDC54-201ENST00000261058 MRC1P22897 1456 aa2.4□□□□□ -2.03
CCDC54-201ENST00000261058 MAST1Q9Y2H9 1570 aa2.4□□□□□ -2.03
CCDC54-201ENST00000261058 TOPAZ1Q8N9V7 1692 aa2.4□□□□□ -2.03
CCDC54-201ENST00000261058 ARFGEF2Q9Y6D5 1785 aa2.4□□□□□ -2.03
CCDC54-201ENST00000261058 TRPM7Q96QT4 1865 aa2.4□□□□□ -2.03
CCDC54-201ENST00000261058 MCM3APO60318 1980 aa2.4□□□□□ -2.03
CCDC54-201ENST00000261058 POLEQ07864 2286 aa2.39□□□□□ -2.03
CCDC54-201ENST00000261058 TRAV3A0A0B4J244 114 aa2.39□□□□□ -2.03
CCDC54-201ENST00000261058 TCRBV4S1A1TA0A5B7 111 aa2.39□□□□□ -2.03
CCDC54-201ENST00000261058 CRYM-AS1A6NIL9 109 aa2.39□□□□□ -2.03
CCDC54-201ENST00000261058 C2orf70A6NJV1 201 aa2.39□□□□□ -2.03
CCDC54-201ENST00000261058 A6NN06 94 aa2.39□□□□□ -2.03
CCDC54-201ENST00000261058 NPYP01303 97 aa2.39□□□□□ -2.03
CCDC54-201ENST00000261058 PRH1P02810 166 aa2.39□□□□□ -2.03
CCDC54-201ENST00000261058 PIRTP0C851 137 aa2.39□□□□□ -2.03
CCDC54-201ENST00000261058 RBM3P98179 157 aaKnown RBP2.39□□□□□ -2.03
CCDC54-201ENST00000261058 SSBP1Q04837 148 aaKnown RBP2.39□□□□□ -2.03
CCDC54-201ENST00000261058 RHOHQ15669 191 aa2.39□□□□□ -2.03
CCDC54-201ENST00000261058 SLC48A1Q6P1K1 146 aa2.39□□□□□ -2.03
CCDC54-201ENST00000261058 PATE2Q6UY27 113 aa2.39□□□□□ -2.03
CCDC54-201ENST00000261058 LYPD1Q8N2G4 141 aa2.39□□□□□ -2.03
CCDC54-201ENST00000261058 MIR7-3HGQ8N6C7 128 aa2.39□□□□□ -2.03
CCDC54-201ENST00000261058 CCL4L1Q8NHW4 92 aa2.39□□□□□ -2.03
CCDC54-201ENST00000261058 CLEC2BQ92478 149 aa2.39□□□□□ -2.03
CCDC54-201ENST00000261058 HILPDAQ9Y5L2 63 aa2.39□□□□□ -2.03
CCDC54-201ENST00000261058 CRYBG1Q9Y4K1 1723 aa2.39□□□□□ -2.03
CCDC54-201ENST00000261058 NYNRINQ9P2P1 1898 aaKnown RBP2.39□□□□□ -2.03
CCDC54-201ENST00000261058 MYO5AQ9Y4I1 1855 aaKnown RBP2.39□□□□□ -2.03
CCDC54-201ENST00000261058 MYOM1P52179 1685 aa2.38□□□□□ -2.03
CCDC54-201ENST00000261058 GCC2Q8IWJ2 1684 aa2.38□□□□□ -2.03
CCDC54-201ENST00000261058 BTAF1O14981 1849 aa2.38□□□□□ -2.03
CCDC54-201ENST00000261058 ARHGEF28Q8N1W1 1705 aaKnown RBP2.38□□□□□ -2.03
CCDC54-201ENST00000261058 TRAV13-2A0A0B4J235 113 aa2.38□□□□□ -2.03
CCDC54-201ENST00000261058 A8MUU9 505 aa2.38□□□□□ -2.03
CCDC54-201ENST00000261058 C3orf84H3BNL1 204 aa2.38□□□□□ -2.03
CCDC54-201ENST00000261058 LECT2O14960 151 aa2.38□□□□□ -2.03
CCDC54-201ENST00000261058 SLC25A20O43772 301 aa2.38□□□□□ -2.03
CCDC54-201ENST00000261058 CPSF4O95639 269 aaKnown RBP2.38□□□□□ -2.03
CCDC54-201ENST00000261058 LHBP01229 141 aa2.38□□□□□ -2.03
CCDC54-201ENST00000261058 IL4P05112 153 aa2.38□□□□□ -2.03
CCDC54-201ENST00000261058 CCL5P13501 91 aa2.38□□□□□ -2.03
CCDC54-201ENST00000261058 SLC25A16P16260 332 aa2.38□□□□□ -2.03
CCDC54-201ENST00000261058 GCHFRP30047 84 aa2.38□□□□□ -2.03
CCDC54-201ENST00000261058 SOSTDC1Q6X4U4 206 aa2.38□□□□□ -2.03
CCDC54-201ENST00000261058 CNEP1R1Q8N9A8 125 aa2.38□□□□□ -2.03
CCDC54-201ENST00000261058 SCGB3A1Q96QR1 104 aa2.38□□□□□ -2.03
CCDC54-201ENST00000261058 NABP2Q9BQ15 211 aa2.38□□□□□ -2.03
CCDC54-201ENST00000261058 CICQ96RK0 1608 aaPredicted RBP2.38□□□□□ -2.03
CCDC54-201ENST00000261058 PLXNB1O43157 2135 aa2.38□□□□□ -2.03
CCDC54-201ENST00000261058 ANKRD36CQ5JPF3 1778 aa2.38□□□□□ -2.03
CCDC54-201ENST00000261058 IQGAP1P46940 1657 aa2.38□□□□□ -2.03
CCDC54-201ENST00000261058 ALS2Q96Q42 1657 aa2.38□□□□□ -2.03
CCDC54-201ENST00000261058 PTPRSQ13332 1948 aa2.38□□□□□ -2.03
CCDC54-201ENST00000261058 COL5A3P25940 1745 aaPredicted RBP2.37□□□□□ -2.03
CCDC54-201ENST00000261058 NUP188Q5SRE5 1749 aa2.37□□□□□ -2.03
CCDC54-201ENST00000261058 PTPRBP23467 1997 aa2.37□□□□□ -2.03
CCDC54-201ENST00000261058 IGKV1D-33P01593 117 aa2.37□□□□□ -2.03
CCDC54-201ENST00000261058 IGKV1-33P01594 117 aa2.37□□□□□ -2.03
CCDC54-201ENST00000261058 IGHV1-69P01742 117 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms