RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 TRAV12-3A0A0B4J271 114 aa12.28□□□□□ -0.44
HOXD3-201ENST00000249440 PRSS29PA6NIE9 313 aa12.28□□□□□ -0.44
HOXD3-201ENST00000249440 CYSLTR1Q9Y271 337 aa12.28□□□□□ -0.44
HOXD3-201ENST00000249440 TMEM89A2RUT3 159 aa12.27□□□□□ -0.44
HOXD3-201ENST00000249440 LINC01619G3V211 115 aa12.27□□□□□ -0.44
HOXD3-201ENST00000249440 IGHV4-59P01825 116 aa12.27□□□□□ -0.44
HOXD3-201ENST00000249440 WFDC12Q8WWY7 111 aa12.27□□□□□ -0.44
HOXD3-201ENST00000249440 ODF3Q96PU9 254 aa12.27□□□□□ -0.44
HOXD3-201ENST00000249440 SNRPD3P62318 126 aaKnown RBP12.27□□□□□ -0.45
HOXD3-201ENST00000249440 DEFB112Q30KQ8 113 aa12.27□□□□□ -0.45
HOXD3-201ENST00000249440 E9PLD3 99 aa12.26□□□□□ -0.45
HOXD3-201ENST00000249440 SUMO4Q6EEV6 95 aa12.26□□□□□ -0.45
HOXD3-201ENST00000249440 ZANQ9Y493 2812 aa12.26□□□□□ -0.45
HOXD3-201ENST00000249440 F5H697 171 aa12.26□□□□□ -0.45
HOXD3-201ENST00000249440 VCYO14598 125 aa12.26□□□□□ -0.45
HOXD3-201ENST00000249440 ZNF688P0C7X2 276 aa12.26□□□□□ -0.45
HOXD3-201ENST00000249440 POLR2KP53803 58 aaKnown RBP12.26□□□□□ -0.45
HOXD3-201ENST00000249440 KRTAP10-9P60411 292 aa12.26□□□□□ -0.45
HOXD3-201ENST00000249440 NEGR1Q7Z3B1 354 aa12.26□□□□□ -0.45
HOXD3-201ENST00000249440 KIR2DL4Q99706 377 aa12.26□□□□□ -0.45
HOXD3-201ENST00000249440 JPT2Q9H910 190 aa12.26□□□□□ -0.45
HOXD3-201ENST00000249440 ANKRD17O75179 2603 aaKnown RBP12.25□□□□□ -0.45
HOXD3-201ENST00000249440 SAP30O75446 220 aa12.25□□□□□ -0.45
HOXD3-201ENST00000249440 LINC01356Q8N9X3 169 aa12.25□□□□□ -0.45
HOXD3-201ENST00000249440 A0A087WWL8 130 aa12.25□□□□□ -0.45
HOXD3-201ENST00000249440 DUSP14O95147 198 aaKnown RBP12.25□□□□□ -0.45
HOXD3-201ENST00000249440 C12orf74Q32Q52 190 aa12.25□□□□□ -0.45
HOXD3-201ENST00000249440 ZFP2Q6ZN57 461 aa12.25□□□□□ -0.45
HOXD3-201ENST00000249440 TRBV7-3A0A075B6L6 115 aa12.24□□□□□ -0.45
HOXD3-201ENST00000249440 A0A0J9YX75 114 aa12.24□□□□□ -0.45
HOXD3-201ENST00000249440 C10orf99Q6UWK7 81 aa12.24□□□□□ -0.45
HOXD3-201ENST00000249440 TP53TG1Q9Y2A0 90 aa12.24□□□□□ -0.45
HOXD3-201ENST00000249440 IGLL5B9A064 214 aa12.23□□□□□ -0.45
HOXD3-201ENST00000249440 J3QKU1 62 aa12.23□□□□□ -0.45
HOXD3-201ENST00000249440 PAPPA-AS1Q5QFB9 102 aa12.23□□□□□ -0.45
HOXD3-201ENST00000249440 PRADC1Q9BSG0 188 aa12.23□□□□□ -0.45
HOXD3-201ENST00000249440 SCGB2A2Q13296 93 aa12.23□□□□□ -0.45
HOXD3-201ENST00000249440 SYT8Q8NBV8 401 aa12.23□□□□□ -0.45
HOXD3-201ENST00000249440 IGHV3-16A0A0C4DH30 117 aa12.22□□□□□ -0.45
HOXD3-201ENST00000249440 IGIPA6NJ69 53 aa12.22□□□□□ -0.45
HOXD3-201ENST00000249440 K7EQG2 157 aa12.22□□□□□ -0.45
HOXD3-201ENST00000249440 LGALS9O00182 355 aa12.22□□□□□ -0.45
HOXD3-201ENST00000249440 CRYGDP07320 174 aa12.22□□□□□ -0.45
HOXD3-201ENST00000249440 C9orf85Q96MD7 179 aa12.22□□□□□ -0.45
HOXD3-201ENST00000249440 SDHAF1A6NFY7 115 aa12.22□□□□□ -0.45
HOXD3-201ENST00000249440 G3V4G9 280 aa12.22□□□□□ -0.45
HOXD3-201ENST00000249440 J3QLI3 93 aa12.22□□□□□ -0.45
HOXD3-201ENST00000249440 IGKV3-20P01619 116 aa12.22□□□□□ -0.45
HOXD3-201ENST00000249440 LGALS1P09382 135 aaKnown RBP12.22□□□□□ -0.45
HOXD3-201ENST00000249440 TMEM141Q96I45 108 aa12.22□□□□□ -0.45
HOXD3-201ENST00000249440 ZNF479Q96JC4 524 aa12.22□□□□□ -0.45
HOXD3-201ENST00000249440 TRAV12-2A0A075B6T6 113 aa12.21□□□□□ -0.45
HOXD3-201ENST00000249440 TRBV6-5A0A0K0K1A5 114 aa12.21□□□□□ -0.45
HOXD3-201ENST00000249440 TRBV27A0A0K0K1C4 114 aa12.21□□□□□ -0.45
HOXD3-201ENST00000249440 TSHBP01222 138 aa12.21□□□□□ -0.45
HOXD3-201ENST00000249440 PMVKQ15126 192 aa12.21□□□□□ -0.45
HOXD3-201ENST00000249440 FAM74A4Q5TZK3 123 aa12.21□□□□□ -0.45
HOXD3-201ENST00000249440 ZNF815PA8K554 130 aa12.21□□□□□ -0.46
HOXD3-201ENST00000249440 FOXI2Q6ZQN5 318 aa12.21□□□□□ -0.46
HOXD3-201ENST00000249440 TIMM17AQ99595 171 aa12.21□□□□□ -0.46
HOXD3-201ENST00000249440 AKAP9Q99996 3911 aa12.21□□□□□ -0.46
HOXD3-201ENST00000249440 Q8N1Y9 231 aa12.2□□□□□ -0.46
HOXD3-201ENST00000249440 MDFICQ9P1T7 246 aa12.2□□□□□ -0.46
HOXD3-201ENST00000249440 A0A1B0GWB2 263 aa12.2□□□□□ -0.46
HOXD3-201ENST00000249440 TGFAP01135 160 aa12.2□□□□□ -0.46
HOXD3-201ENST00000249440 RIPPLY3P57055 190 aa12.2□□□□□ -0.46
HOXD3-201ENST00000249440 SYNJ2BPP57105 145 aa12.2□□□□□ -0.46
HOXD3-201ENST00000249440 HERVK_113P61574 105 aa12.2□□□□□ -0.46
HOXD3-201ENST00000249440 SCGB1D4Q6XE38 83 aa12.2□□□□□ -0.46
HOXD3-201ENST00000249440 UNC79Q9P2D8 2635 aa12.19□□□□□ -0.46
HOXD3-201ENST00000249440 IGLV4-69A0A075B6H9 119 aa12.19□□□□□ -0.46
HOXD3-201ENST00000249440 IGHV1OR15-1A0A075B7D0 117 aa12.19□□□□□ -0.46
HOXD3-201ENST00000249440 RPL39P62891 51 aaKnown RBP12.19□□□□□ -0.46
HOXD3-201ENST00000249440 PDZD2O15018 2839 aa12.19□□□□□ -0.46
HOXD3-201ENST00000249440 C11orf86A6NJI1 115 aa12.19□□□□□ -0.46
HOXD3-201ENST00000249440 ELANEP08246 267 aa12.19□□□□□ -0.46
HOXD3-201ENST00000249440 COX6B1P14854 86 aa12.19□□□□□ -0.46
HOXD3-201ENST00000249440 ZNF56Q15929 161 aa12.19□□□□□ -0.46
HOXD3-201ENST00000249440 SPINK13Q1W4C9 94 aa12.19□□□□□ -0.46
HOXD3-201ENST00000249440 CD300EQ496F6 205 aaPredicted RBP12.19□□□□□ -0.46
HOXD3-201ENST00000249440 DEFB104AQ8WTQ1 72 aa12.18□□□□□ -0.46
HOXD3-201ENST00000249440 VPREB3Q9UKI3 123 aa12.18□□□□□ -0.46
HOXD3-201ENST00000249440 NAV2Q8IVL1 2488 aa12.17□□□□□ -0.46
HOXD3-201ENST00000249440 A0A096LNT2 108 aa12.17□□□□□ -0.46
HOXD3-201ENST00000249440 TMEM238LA0A1B0GVL6 79 aa12.17□□□□□ -0.46
HOXD3-201ENST00000249440 A6NJY4 79 aa12.17□□□□□ -0.46
HOXD3-201ENST00000249440 M0QY20 66 aa12.17□□□□□ -0.46
HOXD3-201ENST00000249440 HOXA3O43365 443 aaPredicted RBP12.17□□□□□ -0.46
HOXD3-201ENST00000249440 RRN3P1Q2M238 152 aa12.17□□□□□ -0.46
HOXD3-201ENST00000249440 UBE2E2Q96LR5 201 aa12.17□□□□□ -0.46
HOXD3-201ENST00000249440 ZNF256Q9Y2P7 627 aaPredicted RBP12.17□□□□□ -0.46
HOXD3-201ENST00000249440 F8W1H4 67 aa12.16□□□□□ -0.46
HOXD3-201ENST00000249440 TRPT1Q86TN4 253 aaKnown RBP12.16□□□□□ -0.46
HOXD3-201ENST00000249440 SORL1Q92673 2214 aa12.16□□□□□ -0.46
HOXD3-201ENST00000249440 HOXD3P31249 432 aaPredicted RBP12.16□□□□□ -0.46
HOXD3-201ENST00000249440 EMP1P54849 157 aa12.16□□□□□ -0.46
HOXD3-201ENST00000249440 SRSF9Q13242 221 aaKnown RBP eCLIP12.16□□□□□ -0.46
HOXD3-201ENST00000249440 COTL1Q14019 142 aa12.16□□□□□ -0.46
HOXD3-201ENST00000249440 CCDC168Q8NDH2 2452 aa12.16□□□□□ -0.46
HOXD3-201ENST00000249440 RPL24P83731 157 aaKnown RBP12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms