RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Igkv1-133A0A0B4J1H8 120 aa13.04□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Olfr175-ps1A0A140T8K4 308 aa13.04□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Lnp1A0A1B0GSK3 178 aa13.04□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 P01783 136 aa13.04□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Olfr1350Q8VF34 308 aa13.04□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Olfr873Q8VFJ0 319 aa13.04□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Olfr1016A2ASV2 309 aa13.04□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 P18530 117 aa13.04□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Fam117aQ7TNF9 451 aa13.04□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Olfr1434Q7TQR9 312 aa13.04□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Crybg1A0A0G2JG52 2065 aa13.04□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Fam222bQ6P539 562 aa13.04□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Ercc8Q8CFD5 397 aa13.04□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Dock7Q8R1A4 2130 aaKnown RBP13.04□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Igh-3P01867 404 aa13.04□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Rnf182Q8C432 247 aa13.04□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Mrpl51Q9CPY1 128 aa13.04□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Olfr466E9Q2B9 308 aa13.03□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Tmem170aQ9D342 144 aa13.03□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 1700015F17RikD3YUK8 150 aa13.03□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 P06334 169 aa13.03□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Pmis2Q497Q9 96 aa13.03□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Htr1dQ61224 374 aa13.03□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 RtbdnQ8QZY4 247 aa13.03□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 C1qtnf4Q8R066 326 aa13.03□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Gpa33Q9JKA5 319 aa13.03□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Esp4A8R0T8 117 aa13.03□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Bet1lO35153 111 aa13.03□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Rnf166Q3U9F6 237 aa13.03□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Xaf1Q5NBU8 273 aa13.03□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Trav6d-4Q5R1I0 115 aa13.03□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 AgaQ64191 346 aa13.03□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Znf641Q8BZ34 422 aa13.03□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Spsb4Q8R5B6 273 aa13.03□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Olfr365Q8VFT2 312 aa13.03□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Rai1Q61818 1889 aa13.03□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 AtrxQ61687 2476 aaKnown RBP13.03□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Rps20P60867 119 aaKnown RBP13.03□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 MyadmO35682 320 aaKnown RBP13.02□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Egr1P08046 533 aa13.02□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 MiaQ61865 130 aa13.02□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Srsf9Q9D0B0 222 aaKnown RBP13.02□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Igkv13-85A0A075B666 115 aa13.02□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Cypt3B1AY64 174 aa13.02□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Khdc1aQ3UWR2 166 aa13.02□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Slc25a35Q5SWT3 300 aa13.02□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Olfr139Q60891 315 aa13.02□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Pef1Q8BFY6 275 aa13.02□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Rasl11bQ922H7 247 aa13.02□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Leprotl1Q9CQ74 131 aa13.02□□□□□ -0.32
Ccdc88b-201ENSMUST00000113440 Dock9Q8BIK4 2055 aa13.02□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Ighv6-3A0A075B5T2 118 aa13.02□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Ca2P00920 260 aaKnown RBP13.02□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Ccl2P10148 148 aa13.02□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Olfr918E9PVZ7 325 aa13.02□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 A630076J17RikJ3QQ32 107 aa13.02□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 H2afb1Q9CQ70 111 aa13.02□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Mrpl33Q9CQP0 65 aa13.02□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Prr15Q9D1T5 122 aa13.02□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Olfr1189A2AV11 306 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Wdr86D3Z757 380 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Smim13E9Q942 88 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Hist1h2bfP10853 126 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Hist1h2bbQ64475 126 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 EtdQ80SW5 59 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Fam206aQ80ZQ9 193 aaKnown RBP13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Hist3h2bbQ8CGP0 126 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Hist1h2bkQ8CGP1 126 aaKnown RBP13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Hist1h2bpQ8CGP2 126 aaKnown RBP13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Ndufb3Q9CQZ6 104 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Hist3h2baQ9D2U9 126 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Hils1Q9QYL0 170 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Sfrp4Q9Z1N6 351 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Gm42715A0A087WP63 3095 aaKnown RBP13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Trav4-2A0A075B638 110 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Omt2bD3YX29 119 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Gm17430F6RSK3 157 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Gm21732J3QM79 361 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Gm21921J3QNB5 361 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Rpl23P62830 140 aaKnown RBP13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Olfr25Q7TRD6 313 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Scnm1Q8K136 229 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Olfr1256Q8VGP1 306 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 EsdQ9R0P3 282 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Sumo3Q9Z172 110 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Iglc3P01845 104 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Wdr82Q8BFQ4 313 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Habp2Q8K0D2 558 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Tmprss5Q9ER04 455 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 C2cd4aE9Q861 334 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Slc25a17O70579 307 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 RprmlQ3URD2 117 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Sh2d6Q9D413 297 aa13.01□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Csrp1P97315 193 aaKnown RBP13□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Bsph2Q0Q236 131 aa13□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Psg18B2RSG7 476 aa13□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Myoz1Q9JK37 296 aa13□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 St6galnac3Q9WUV2 305 aa13□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Gdf15Q9Z0J7 303 aa13□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Trav6d-5A0A075B6B9 112 aa13□□□□□ -0.33
Retrieved 100 of 22,080 RNA–protein pairs in 63.9 ms