Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Gm25239-201ENSMUST00000174915 86 ntBASIC31.98■■■□□ 2.71
Trav6d-4Q5R1I0 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
Trav6d-4Q5R1I0 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
Trav6d-4Q5R1I0 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Trav6d-4Q5R1I0 Gm15042-201ENSMUST00000120212 883 ntBASIC28.11■■■□□ 2.09
Trav6d-4Q5R1I0 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
Trav6d-4Q5R1I0 Gm24109-201ENSMUST00000175489 103 ntBASIC27.62■■■□□ 2.01
Trav6d-4Q5R1I0 Gm15045-201ENSMUST00000117359 883 ntBASIC27.5■■□□□ 1.99
Trav6d-4Q5R1I0 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC27.4■■□□□ 1.98
Trav6d-4Q5R1I0 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
Trav6d-4Q5R1I0 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.91
Trav6d-4Q5R1I0 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
Trav6d-4Q5R1I0 Gm23366-201ENSMUST00000175022 89 ntBASIC26.75■■□□□ 1.87
Trav6d-4Q5R1I0 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Trav6d-4Q5R1I0 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Trav6d-4Q5R1I0 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC26.37■■□□□ 1.81
Trav6d-4Q5R1I0 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Trav6d-4Q5R1I0 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
Trav6d-4Q5R1I0 Psd-208ENSMUST00000224556 2034 ntBASIC26.12■■□□□ 1.77
Trav6d-4Q5R1I0 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Trav6d-4Q5R1I0 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Trav6d-4Q5R1I0 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
Trav6d-4Q5R1I0 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC25.95■■□□□ 1.74
Trav6d-4Q5R1I0 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
Trav6d-4Q5R1I0 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC25.89■■□□□ 1.73
Trav6d-4Q5R1I0 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Trav6d-4Q5R1I0 AC153911.1-202ENSMUST00000218534 1034 ntBASIC25.82■■□□□ 1.72
Trav6d-4Q5R1I0 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC25.75■■□□□ 1.71
Trav6d-4Q5R1I0 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
Trav6d-4Q5R1I0 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC25.57■■□□□ 1.68
Trav6d-4Q5R1I0 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC25.42■■□□□ 1.66
Trav6d-4Q5R1I0 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Trav6d-4Q5R1I0 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC25.37■■□□□ 1.65
Trav6d-4Q5R1I0 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Trav6d-4Q5R1I0 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Trav6d-4Q5R1I0 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Trav6d-4Q5R1I0 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Trav6d-4Q5R1I0 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC25.19■■□□□ 1.62
Trav6d-4Q5R1I0 Gm25238-201ENSMUST00000174914 89 ntBASIC25.19■■□□□ 1.62
Trav6d-4Q5R1I0 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC25.18■■□□□ 1.62
Trav6d-4Q5R1I0 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Trav6d-4Q5R1I0 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Trav6d-4Q5R1I0 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC24.91■■□□□ 1.58
Trav6d-4Q5R1I0 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Trav6d-4Q5R1I0 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
Trav6d-4Q5R1I0 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Trav6d-4Q5R1I0 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Trav6d-4Q5R1I0 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC24.71■■□□□ 1.55
Trav6d-4Q5R1I0 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC24.7■■□□□ 1.54
Trav6d-4Q5R1I0 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC24.68■■□□□ 1.54
Trav6d-4Q5R1I0 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Trav6d-4Q5R1I0 Gm27325-201ENSMUST00000175467 74 ntBASIC24.67■■□□□ 1.54
Trav6d-4Q5R1I0 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Trav6d-4Q5R1I0 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
Trav6d-4Q5R1I0 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
Trav6d-4Q5R1I0 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC24.45■■□□□ 1.5
Trav6d-4Q5R1I0 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC24.45■■□□□ 1.5
Trav6d-4Q5R1I0 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Trav6d-4Q5R1I0 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC24.4■■□□□ 1.5
Trav6d-4Q5R1I0 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Trav6d-4Q5R1I0 Gm10524-201ENSMUST00000181931 1893 ntBASIC24.36■■□□□ 1.49
Trav6d-4Q5R1I0 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
Trav6d-4Q5R1I0 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
Trav6d-4Q5R1I0 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Trav6d-4Q5R1I0 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC24.31■■□□□ 1.48
Trav6d-4Q5R1I0 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Trav6d-4Q5R1I0 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Trav6d-4Q5R1I0 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Trav6d-4Q5R1I0 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
Trav6d-4Q5R1I0 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Trav6d-4Q5R1I0 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Trav6d-4Q5R1I0 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC24.22■■□□□ 1.47
Trav6d-4Q5R1I0 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC24.13■■□□□ 1.45
Trav6d-4Q5R1I0 Rab21-202ENSMUST00000218831 843 ntBASIC24.12■■□□□ 1.45
Trav6d-4Q5R1I0 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Trav6d-4Q5R1I0 Gm25262-201ENSMUST00000174934 133 ntBASIC24.07■■□□□ 1.44
Trav6d-4Q5R1I0 CT025624.2-201ENSMUST00000223609 1909 ntBASIC24.06■■□□□ 1.44
Trav6d-4Q5R1I0 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC24.03■■□□□ 1.44
Trav6d-4Q5R1I0 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC24.02■■□□□ 1.44
Trav6d-4Q5R1I0 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Trav6d-4Q5R1I0 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Trav6d-4Q5R1I0 Gm42596-201ENSMUST00000196305 1958 ntBASIC23.97■■□□□ 1.43
Trav6d-4Q5R1I0 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Trav6d-4Q5R1I0 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
Trav6d-4Q5R1I0 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
Trav6d-4Q5R1I0 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
Trav6d-4Q5R1I0 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Trav6d-4Q5R1I0 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Trav6d-4Q5R1I0 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC23.75■■□□□ 1.39
Trav6d-4Q5R1I0 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Trav6d-4Q5R1I0 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC23.72■■□□□ 1.39
Trav6d-4Q5R1I0 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Trav6d-4Q5R1I0 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC23.64■■□□□ 1.37
Trav6d-4Q5R1I0 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Trav6d-4Q5R1I0 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Trav6d-4Q5R1I0 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Trav6d-4Q5R1I0 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
Trav6d-4Q5R1I0 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Trav6d-4Q5R1I0 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC23.56■■□□□ 1.36
Trav6d-4Q5R1I0 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC23.56■■□□□ 1.36
Retrieved 100 of 76,532 protein–RNA pairs in 56.9 ms