RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 IL36BQ9NZH7 164 aa14.43□□□□□ -0.1
CLN3-240ENST00000631023 CIDEAO60543 219 aa14.43□□□□□ -0.1
CLN3-240ENST00000631023 CRYBA4P53673 196 aa14.43□□□□□ -0.1
CLN3-240ENST00000631023 RBFOX3A6NFN3 312 aa14.41□□□□□ -0.1
CLN3-240ENST00000631023 PGPEP1LA6NFU8 196 aa14.41□□□□□ -0.1
CLN3-240ENST00000631023 GNG4P50150 75 aa14.41□□□□□ -0.1
CLN3-240ENST00000631023 CENPWQ5EE01 88 aa14.41□□□□□ -0.1
CLN3-240ENST00000631023 PIK3CD-AS1Q5SR53 167 aa14.41□□□□□ -0.1
CLN3-240ENST00000631023 PRR27Q6MZM9 219 aa14.41□□□□□ -0.1
CLN3-240ENST00000631023 SMIM12Q96EX1 92 aa14.41□□□□□ -0.1
CLN3-240ENST00000631023 DNAH6Q9C0G6 4158 aa14.41□□□□□ -0.1
CLN3-240ENST00000631023 TMSB15BA0A087X1C1 80 aa14.4□□□□□ -0.1
CLN3-240ENST00000631023 GRIFINA4D1Z8 144 aa14.4□□□□□ -0.1
CLN3-240ENST00000631023 H3BVH4 76 aa14.4□□□□□ -0.1
CLN3-240ENST00000631023 ARMS2P0C7Q2 107 aa14.4□□□□□ -0.1
CLN3-240ENST00000631023 ZNF506Q5JVG8 444 aa14.4□□□□□ -0.1
CLN3-240ENST00000631023 ICOSQ9Y6W8 199 aa14.4□□□□□ -0.1
CLN3-240ENST00000631023 A0A096LPF7 62 aa14.39□□□□□ -0.11
CLN3-240ENST00000631023 RAB19A4D1S5 217 aa14.39□□□□□ -0.11
CLN3-240ENST00000631023 SYT8Q8NBV8 401 aa14.39□□□□□ -0.11
CLN3-240ENST00000631023 RS1O15537 224 aa14.39□□□□□ -0.11
CLN3-240ENST00000631023 MGST1P10620 155 aaKnown RBP14.39□□□□□ -0.11
CLN3-240ENST00000631023 MRPL23Q16540 153 aaKnown RBP14.39□□□□□ -0.11
CLN3-240ENST00000631023 CFAP126Q5VTH2 177 aa14.39□□□□□ -0.11
CLN3-240ENST00000631023 PHLDA3Q9Y5J5 127 aa14.39□□□□□ -0.11
CLN3-240ENST00000631023 A8MWV9 139 aa14.38□□□□□ -0.11
CLN3-240ENST00000631023 DAZAP1Q96EP5 407 aaKnown RBP14.38□□□□□ -0.11
CLN3-240ENST00000631023 BIN3Q9NQY0 253 aa14.38□□□□□ -0.11
CLN3-240ENST00000631023 LINC00588Q9Y4M8 146 aa14.38□□□□□ -0.11
CLN3-240ENST00000631023 PCNPQ8WW12 178 aaKnown RBP14.37□□□□□ -0.11
CLN3-240ENST00000631023 TMEM250H0YL14 139 aa14.36□□□□□ -0.11
CLN3-240ENST00000631023 CXCL1P09341 107 aa14.36□□□□□ -0.11
CLN3-240ENST00000631023 ESRGQ1W209 222 aa14.36□□□□□ -0.11
CLN3-240ENST00000631023 ZNF575Q86XF7 245 aa14.36□□□□□ -0.11
CLN3-240ENST00000631023 MED14OSP0DP75 135 aa14.35□□□□□ -0.11
CLN3-240ENST00000631023 GATA1P15976 413 aaPredicted RBP14.35□□□□□ -0.11
CLN3-240ENST00000631023 DMRTA1Q5VZB9 504 aa14.35□□□□□ -0.11
CLN3-240ENST00000631023 TEX261Q6UWH6 196 aa14.35□□□□□ -0.11
CLN3-240ENST00000631023 EIF5A2Q9GZV4 153 aaKnown RBP14.35□□□□□ -0.11
CLN3-240ENST00000631023 SCRT2Q9NQ03 307 aa14.35□□□□□ -0.11
CLN3-240ENST00000631023 IGLV2-8P01709 118 aa14.34□□□□□ -0.11
CLN3-240ENST00000631023 GYPEP15421 78 aa14.34□□□□□ -0.11
CLN3-240ENST00000631023 RPL19P84098 196 aaKnown RBP14.34□□□□□ -0.11
CLN3-240ENST00000631023 IGLV2-18A0A075B6J9 118 aa14.34□□□□□ -0.11
CLN3-240ENST00000631023 SRIP30626 198 aa14.34□□□□□ -0.11
CLN3-240ENST00000631023 TOR2AQ5JU69 321 aa14.34□□□□□ -0.11
CLN3-240ENST00000631023 ZFP2Q6ZN57 461 aa14.34□□□□□ -0.11
CLN3-240ENST00000631023 NEGR1Q7Z3B1 354 aa14.34□□□□□ -0.11
CLN3-240ENST00000631023 TRBV20OR9-2A0A075B6H5 130 aa14.33□□□□□ -0.12
CLN3-240ENST00000631023 IGHV3-73A0A0B4J1V6 119 aa14.33□□□□□ -0.12
CLN3-240ENST00000631023 K7EQD1 137 aa14.33□□□□□ -0.12
CLN3-240ENST00000631023 M0R2N4 97 aa14.33□□□□□ -0.12
CLN3-240ENST00000631023 ZFP82Q8N141 532 aa14.33□□□□□ -0.12
CLN3-240ENST00000631023 ZNRF2Q8NHG8 242 aa14.33□□□□□ -0.12
CLN3-240ENST00000631023 FAM210AQ96ND0 272 aa14.33□□□□□ -0.12
CLN3-240ENST00000631023 PRADC1Q9BSG0 188 aa14.33□□□□□ -0.12
CLN3-240ENST00000631023 NDUFS6O75380 124 aaKnown RBP14.32□□□□□ -0.12
CLN3-240ENST00000631023 RPS20P60866 119 aaKnown RBP14.32□□□□□ -0.12
CLN3-240ENST00000631023 SH2D6Q7Z4S9 175 aa14.32□□□□□ -0.12
CLN3-240ENST00000631023 PARLQ9H300 379 aa14.32□□□□□ -0.12
CLN3-240ENST00000631023 TRBV6-4A0A1B0GX49 114 aa14.31□□□□□ -0.12
CLN3-240ENST00000631023 M0R381 172 aa14.31□□□□□ -0.12
CLN3-240ENST00000631023 UPK3BQ9BT76 320 aa14.31□□□□□ -0.12
CLN3-240ENST00000631023 Q9H8V8 135 aa14.31□□□□□ -0.12
CLN3-240ENST00000631023 MRPS16Q9Y3D3 137 aaKnown RBP14.31□□□□□ -0.12
CLN3-240ENST00000631023 C19orf71A6NCJ1 209 aa14.3□□□□□ -0.12
CLN3-240ENST00000631023 RHODO00212 210 aa14.3□□□□□ -0.12
CLN3-240ENST00000631023 P01737 135 aa14.3□□□□□ -0.12
CLN3-240ENST00000631023 RHOHQ15669 191 aa14.3□□□□□ -0.12
CLN3-240ENST00000631023 SLC25A29Q8N8R3 303 aa14.3□□□□□ -0.12
CLN3-240ENST00000631023 XKRY2A2RUG3 117 aa14.3□□□□□ -0.12
CLN3-240ENST00000631023 OR5AL1P0C617 328 aa14.3□□□□□ -0.12
CLN3-240ENST00000631023 CEBPGP53567 150 aa14.3□□□□□ -0.12
CLN3-240ENST00000631023 OR2D3Q8NGH3 330 aa14.3□□□□□ -0.12
CLN3-240ENST00000631023 SSBP4Q9BWG4 385 aaPredicted RBP14.3□□□□□ -0.12
CLN3-240ENST00000631023 JPT2Q9H910 190 aa14.3□□□□□ -0.12
CLN3-240ENST00000631023 LYPD5Q6UWN5 251 aa14.29□□□□□ -0.12
CLN3-240ENST00000631023 OCC1Q8TAD7 63 aa14.29□□□□□ -0.12
CLN3-240ENST00000631023 SFRP2Q96HF1 295 aa14.29□□□□□ -0.12
CLN3-240ENST00000631023 SNAI2O43623 268 aa14.28□□□□□ -0.12
CLN3-240ENST00000631023 Q6ZR54 194 aa14.28□□□□□ -0.12
CLN3-240ENST00000631023 LOC100131303A0A0U1RQF7 123 aa14.27□□□□□ -0.12
CLN3-240ENST00000631023 FAM74A4Q5TZK3 123 aa14.27□□□□□ -0.12
CLN3-240ENST00000631023 SPANXN1Q5VSR9 72 aa14.27□□□□□ -0.12
CLN3-240ENST00000631023 OR10AG1Q8NH19 301 aa14.27□□□□□ -0.12
CLN3-240ENST00000631023 SAMD10Q9BYL1 202 aa14.27□□□□□ -0.12
CLN3-240ENST00000631023 NBDYA0A0U1RRE5 68 aa14.26□□□□□ -0.13
CLN3-240ENST00000631023 UFSP1Q6NVU6 142 aa14.26□□□□□ -0.13
CLN3-240ENST00000631023 NXPH4O95158 308 aa14.26□□□□□ -0.13
CLN3-240ENST00000631023 NUDT10Q8NFP7 164 aa14.26□□□□□ -0.13
CLN3-240ENST00000631023 NUDT11Q96G61 164 aa14.26□□□□□ -0.13
CLN3-240ENST00000631023 A0A087WWL8 130 aa14.25□□□□□ -0.13
CLN3-240ENST00000631023 SOHLH1Q5JUK2 328 aa14.25□□□□□ -0.13
CLN3-240ENST00000631023 FER1L6-AS1Q8NA97 138 aa14.25□□□□□ -0.13
CLN3-240ENST00000631023 SMIM7Q9BQ49 75 aa14.25□□□□□ -0.13
CLN3-240ENST00000631023 CRYGDP07320 174 aa14.24□□□□□ -0.13
CLN3-240ENST00000631023 SRP19P09132 144 aaKnown RBP14.24□□□□□ -0.13
CLN3-240ENST00000631023 GZMBP10144 247 aa14.24□□□□□ -0.13
CLN3-240ENST00000631023 TTC32Q5I0X7 151 aa14.24□□□□□ -0.13
CLN3-240ENST00000631023 Q6ZSN1 163 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms