RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 ZNF506Q5JVG8 444 aa12.93□□□□□ -0.34
CCDC28A-203ENST00000617445 CYTL1Q9NRR1 136 aa12.93□□□□□ -0.34
CCDC28A-203ENST00000617445 ARL2-SNX15V9GYD0 113 aa12.93□□□□□ -0.34
CCDC28A-203ENST00000617445 TRAV8-6A0A0B4J262 113 aa12.92□□□□□ -0.34
CCDC28A-203ENST00000617445 TRAV34A0A0B4J273 112 aa12.92□□□□□ -0.34
CCDC28A-203ENST00000617445 IGHV3-38A0A0C4DH36 116 aa12.92□□□□□ -0.34
CCDC28A-203ENST00000617445 PGPEP1LA6NFU8 196 aa12.92□□□□□ -0.34
CCDC28A-203ENST00000617445 CRYGDP07320 174 aa12.92□□□□□ -0.34
CCDC28A-203ENST00000617445 S100A4P26447 101 aaKnown RBP12.92□□□□□ -0.34
CCDC28A-203ENST00000617445 UBE2G2P60604 165 aa12.92□□□□□ -0.34
CCDC28A-203ENST00000617445 DPPA3Q6W0C5 159 aa12.92□□□□□ -0.34
CCDC28A-203ENST00000617445 KCNRGQ8N5I3 272 aa12.92□□□□□ -0.34
CCDC28A-203ENST00000617445 MAPKAPK5-AS1Q8N8E1 139 aa12.92□□□□□ -0.34
CCDC28A-203ENST00000617445 LINC00479Q96M42 142 aa12.92□□□□□ -0.34
CCDC28A-203ENST00000617445 TCEAL7Q9BRU2 100 aa12.92□□□□□ -0.34
CCDC28A-203ENST00000617445 ZFP30Q9Y2G7 519 aa12.92□□□□□ -0.34
CCDC28A-203ENST00000617445 TNFRSF18Q9Y5U5 241 aa12.92□□□□□ -0.34
CCDC28A-203ENST00000617445 HSPG2P98160 4391 aa12.91□□□□□ -0.34
CCDC28A-203ENST00000617445 A8MWV9 139 aa12.91□□□□□ -0.34
CCDC28A-203ENST00000617445 ZFP2Q6ZN57 461 aa12.91□□□□□ -0.34
CCDC28A-203ENST00000617445 STOML3Q8TAV4 291 aa12.91□□□□□ -0.34
CCDC28A-203ENST00000617445 IGKV3D-20A0A0C4DH25 116 aa12.9□□□□□ -0.34
CCDC28A-203ENST00000617445 A0A0D9SG52 128 aa12.9□□□□□ -0.34
CCDC28A-203ENST00000617445 MAP1LC3B2A6NCE7 125 aa12.9□□□□□ -0.34
CCDC28A-203ENST00000617445 ASIPP42127 132 aa12.9□□□□□ -0.34
CCDC28A-203ENST00000617445 FHITP49789 147 aa12.9□□□□□ -0.34
CCDC28A-203ENST00000617445 FGF8P55075 233 aaPredicted RBP12.9□□□□□ -0.34
CCDC28A-203ENST00000617445 LINC01556Q5JQF7 62 aa12.9□□□□□ -0.34
CCDC28A-203ENST00000617445 COX8CQ7Z4L0 72 aa12.9□□□□□ -0.34
CCDC28A-203ENST00000617445 OR11H4Q8NGC9 324 aa12.9□□□□□ -0.34
CCDC28A-203ENST00000617445 MAP1LC3BQ9GZQ8 125 aa12.9□□□□□ -0.34
CCDC28A-203ENST00000617445 IL36BQ9NZH7 164 aa12.9□□□□□ -0.34
CCDC28A-203ENST00000617445 A0A087WTM6 91 aa12.89□□□□□ -0.35
CCDC28A-203ENST00000617445 Q86TA4 180 aa12.89□□□□□ -0.35
CCDC28A-203ENST00000617445 Q8N1X5 172 aa12.89□□□□□ -0.35
CCDC28A-203ENST00000617445 FMC1Q96HJ9 113 aa12.89□□□□□ -0.35
CCDC28A-203ENST00000617445 KRTAP4-5Q9BYR2 181 aa12.89□□□□□ -0.35
CCDC28A-203ENST00000617445 IGHV3-73A0A0B4J1V6 119 aa12.88□□□□□ -0.35
CCDC28A-203ENST00000617445 DNLZQ5SXM8 178 aa12.88□□□□□ -0.35
CCDC28A-203ENST00000617445 LELP1Q5T871 98 aa12.88□□□□□ -0.35
CCDC28A-203ENST00000617445 ATP6V0E2Q8NHE4 81 aa12.88□□□□□ -0.35
CCDC28A-203ENST00000617445 GTSF1LQ9H1H1 148 aa12.88□□□□□ -0.35
CCDC28A-203ENST00000617445 TRBV6-1A0A0K0K1D8 114 aa12.87□□□□□ -0.35
CCDC28A-203ENST00000617445 B4DEV8 164 aa12.87□□□□□ -0.35
CCDC28A-203ENST00000617445 UBE2G1P62253 170 aa12.87□□□□□ -0.35
CCDC28A-203ENST00000617445 LGALSLQ3ZCW2 172 aaPredicted RBP12.87□□□□□ -0.35
CCDC28A-203ENST00000617445 OR10J3Q5JRS4 329 aa12.87□□□□□ -0.35
CCDC28A-203ENST00000617445 FAM162BQ5T6X4 162 aa12.87□□□□□ -0.35
CCDC28A-203ENST00000617445 PARLQ9H300 379 aa12.87□□□□□ -0.35
CCDC28A-203ENST00000617445 KANTRA0A1W2PQU2 76 aa12.86□□□□□ -0.35
CCDC28A-203ENST00000617445 SYT8Q8NBV8 401 aa12.86□□□□□ -0.35
CCDC28A-203ENST00000617445 IBA57-AS1B1ANH7 110 aa12.85□□□□□ -0.35
CCDC28A-203ENST00000617445 UMAD1C9J7I0 102 aa12.85□□□□□ -0.35
CCDC28A-203ENST00000617445 KRBOX1C9JBD0 128 aa12.85□□□□□ -0.35
CCDC28A-203ENST00000617445 BCL2L11O43521 198 aa12.85□□□□□ -0.35
CCDC28A-203ENST00000617445 SEC11BP0C7V7 166 aa12.85□□□□□ -0.35
CCDC28A-203ENST00000617445 EIF5AP63241 154 aaKnown RBP12.85□□□□□ -0.35
CCDC28A-203ENST00000617445 CST9LP1Q5W188 147 aa12.85□□□□□ -0.35
CCDC28A-203ENST00000617445 ZC2HC1AQ96GY0 325 aa12.85□□□□□ -0.35
CCDC28A-203ENST00000617445 RHODO00212 210 aa12.84□□□□□ -0.35
CCDC28A-203ENST00000617445 CRIP1P50238 77 aa12.84□□□□□ -0.35
CCDC28A-203ENST00000617445 Q6ZNX1 250 aa12.84□□□□□ -0.35
CCDC28A-203ENST00000617445 ZNF471Q9BX82 626 aaPredicted RBP12.84□□□□□ -0.35
CCDC28A-203ENST00000617445 DNAH5Q8TE73 4624 aa12.83□□□□□ -0.36
CCDC28A-203ENST00000617445 PSCAO43653 123 aa12.83□□□□□ -0.36
CCDC28A-203ENST00000617445 SH2D1AO60880 128 aa12.83□□□□□ -0.36
CCDC28A-203ENST00000617445 LTAP01374 205 aa12.83□□□□□ -0.36
CCDC28A-203ENST00000617445 S100A9P06702 114 aaKnown RBP12.83□□□□□ -0.36
CCDC28A-203ENST00000617445 ZNF674Q2M3X9 581 aa12.83□□□□□ -0.36
CCDC28A-203ENST00000617445 MBD3L1Q8WWY6 194 aa12.83□□□□□ -0.36
CCDC28A-203ENST00000617445 SCRT2Q9NQ03 307 aa12.83□□□□□ -0.36
CCDC28A-203ENST00000617445 H3BVH4 76 aa12.82□□□□□ -0.36
CCDC28A-203ENST00000617445 PFDN1O60925 122 aa12.82□□□□□ -0.36
CCDC28A-203ENST00000617445 ARMS2P0C7Q2 107 aa12.82□□□□□ -0.36
CCDC28A-203ENST00000617445 LAGE3Q14657 143 aa12.82□□□□□ -0.36
CCDC28A-203ENST00000617445 DMRTA1Q5VZB9 504 aa12.82□□□□□ -0.36
CCDC28A-203ENST00000617445 UFSP1Q6NVU6 142 aa12.82□□□□□ -0.36
CCDC28A-203ENST00000617445 Q6ZSN1 163 aa12.82□□□□□ -0.36
CCDC28A-203ENST00000617445 TMUB2Q71RG4 321 aa12.82□□□□□ -0.36
CCDC28A-203ENST00000617445 TCTE3Q8IZS6 198 aa12.82□□□□□ -0.36
CCDC28A-203ENST00000617445 A0A087WWC5 75 aa12.81□□□□□ -0.36
CCDC28A-203ENST00000617445 LINC00694P0DN24 101 aa12.81□□□□□ -0.36
CCDC28A-203ENST00000617445 AKR1C3P42330 323 aa12.81□□□□□ -0.36
CCDC28A-203ENST00000617445 LINC01559Q495D7 138 aa12.81□□□□□ -0.36
CCDC28A-203ENST00000617445 SFT2D1Q8WV19 159 aa12.81□□□□□ -0.36
CCDC28A-203ENST00000617445 PHLDA3Q9Y5J5 127 aa12.81□□□□□ -0.36
CCDC28A-203ENST00000617445 M0R036 132 aa12.8□□□□□ -0.36
CCDC28A-203ENST00000617445 PAGE4O60829 102 aa12.8□□□□□ -0.36
CCDC28A-203ENST00000617445 TPT1P13693 172 aaKnown RBP12.8□□□□□ -0.36
CCDC28A-203ENST00000617445 APOBP04114 4563 aaKnown RBP12.8□□□□□ -0.36
CCDC28A-203ENST00000617445 GAGE12JA6NER3 117 aa12.79□□□□□ -0.36
CCDC28A-203ENST00000617445 GAGE1Q13065 139 aa12.79□□□□□ -0.36
CCDC28A-203ENST00000617445 GAGE4Q13068 117 aa12.79□□□□□ -0.36
CCDC28A-203ENST00000617445 GAGE5Q13069 117 aa12.79□□□□□ -0.36
CCDC28A-203ENST00000617445 GAGE13Q4V321 117 aa12.79□□□□□ -0.36
CCDC28A-203ENST00000617445 FAM213BQ8TBF2 198 aa12.79□□□□□ -0.36
CCDC28A-203ENST00000617445 NTN5Q8WTR8 489 aaPredicted RBP12.79□□□□□ -0.36
CCDC28A-203ENST00000617445 SFRP2Q96HF1 295 aa12.79□□□□□ -0.36
CCDC28A-203ENST00000617445 TM2D2Q9BX73 214 aa12.79□□□□□ -0.36
CCDC28A-203ENST00000617445 JPT2Q9H910 190 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms