RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 BCL2P10415 239 aa13.47□□□□□ -0.25
UPF1-212ENST00000601689 RNASE3P12724 160 aaKnown RBP13.47□□□□□ -0.25
UPF1-212ENST00000601689 SRIP30626 198 aa13.47□□□□□ -0.25
UPF1-212ENST00000601689 NHLRC2Q8NBF2 726 aa13.47□□□□□ -0.25
UPF1-212ENST00000601689 C11orf52Q96A22 123 aa13.47□□□□□ -0.25
UPF1-212ENST00000601689 DAZAP1Q96EP5 407 aaKnown RBP13.47□□□□□ -0.25
UPF1-212ENST00000601689 BIN3Q9NQY0 253 aa13.47□□□□□ -0.25
UPF1-212ENST00000601689 MED9Q9NWA0 146 aa13.47□□□□□ -0.25
UPF1-212ENST00000601689 LINC00588Q9Y4M8 146 aa13.47□□□□□ -0.25
UPF1-212ENST00000601689 PHLDA3Q9Y5J5 127 aa13.47□□□□□ -0.25
UPF1-212ENST00000601689 VPS13DQ5THJ4 4388 aa13.47□□□□□ -0.25
UPF1-212ENST00000601689 CRIP1P50238 77 aa13.46□□□□□ -0.25
UPF1-212ENST00000601689 LINC01559Q495D7 138 aa13.46□□□□□ -0.25
UPF1-212ENST00000601689 DNLZQ5SXM8 178 aa13.46□□□□□ -0.25
UPF1-212ENST00000601689 NEGR1Q7Z3B1 354 aa13.46□□□□□ -0.25
UPF1-212ENST00000601689 SH2D6Q7Z4S9 175 aa13.46□□□□□ -0.25
UPF1-212ENST00000601689 PRADC1Q9BSG0 188 aa13.46□□□□□ -0.25
UPF1-212ENST00000601689 H3BVH4 76 aa13.45□□□□□ -0.26
UPF1-212ENST00000601689 NKX2-5P52952 324 aaPredicted RBP13.45□□□□□ -0.26
UPF1-212ENST00000601689 ZNF506Q5JVG8 444 aa13.45□□□□□ -0.26
UPF1-212ENST00000601689 PRR27Q6MZM9 219 aa13.45□□□□□ -0.26
UPF1-212ENST00000601689 SMIM12Q96EX1 92 aa13.45□□□□□ -0.26
UPF1-212ENST00000601689 TMSB15BA0A087X1C1 80 aa13.44□□□□□ -0.26
UPF1-212ENST00000601689 PGPEP1LA6NFU8 196 aa13.44□□□□□ -0.26
UPF1-212ENST00000601689 RS1O15537 224 aa13.44□□□□□ -0.26
UPF1-212ENST00000601689 ARMS2P0C7Q2 107 aa13.44□□□□□ -0.26
UPF1-212ENST00000601689 MGST1P10620 155 aaKnown RBP13.44□□□□□ -0.26
UPF1-212ENST00000601689 GYPEP15421 78 aa13.44□□□□□ -0.26
UPF1-212ENST00000601689 GNG4P50150 75 aa13.44□□□□□ -0.26
UPF1-212ENST00000601689 ESRGQ1W209 222 aa13.44□□□□□ -0.26
UPF1-212ENST00000601689 LINC00336Q6ZUF6 198 aa13.44□□□□□ -0.26
UPF1-212ENST00000601689 MLST8Q9BVC4 326 aa13.44□□□□□ -0.26
UPF1-212ENST00000601689 Q9H8V8 135 aa13.44□□□□□ -0.26
UPF1-212ENST00000601689 GRIFINA4D1Z8 144 aa13.43□□□□□ -0.26
UPF1-212ENST00000601689 TTC32Q5I0X7 151 aa13.43□□□□□ -0.26
UPF1-212ENST00000601689 CFAP126Q5VTH2 177 aa13.43□□□□□ -0.26
UPF1-212ENST00000601689 ZNRF2Q8NHG8 242 aa13.43□□□□□ -0.26
UPF1-212ENST00000601689 UPK3BQ9BT76 320 aa13.43□□□□□ -0.26
UPF1-212ENST00000601689 MRPS16Q9Y3D3 137 aaKnown RBP13.43□□□□□ -0.26
UPF1-212ENST00000601689 RHOHQ15669 191 aa13.42□□□□□ -0.26
UPF1-212ENST00000601689 CENPWQ5EE01 88 aa13.42□□□□□ -0.26
UPF1-212ENST00000601689 ZFP82Q8N141 532 aa13.42□□□□□ -0.26
UPF1-212ENST00000601689 DNAH6Q9C0G6 4158 aa13.42□□□□□ -0.26
UPF1-212ENST00000601689 TRBV6-4A0A1B0GX49 114 aa13.41□□□□□ -0.26
UPF1-212ENST00000601689 K7EQD1 137 aa13.41□□□□□ -0.26
UPF1-212ENST00000601689 RHODO00212 210 aa13.41□□□□□ -0.26
UPF1-212ENST00000601689 CXCL1P09341 107 aa13.41□□□□□ -0.26
UPF1-212ENST00000601689 MED14OSP0DP75 135 aa13.41□□□□□ -0.26
UPF1-212ENST00000601689 GATA1P15976 413 aaPredicted RBP13.41□□□□□ -0.26
UPF1-212ENST00000601689 ZFP2Q6ZN57 461 aa13.41□□□□□ -0.26
UPF1-212ENST00000601689 NBDYA0A0U1RRE5 68 aa13.4□□□□□ -0.26
UPF1-212ENST00000601689 XKRY2A2RUG3 117 aa13.4□□□□□ -0.26
UPF1-212ENST00000601689 RPS20P60866 119 aaKnown RBP13.4□□□□□ -0.26
UPF1-212ENST00000601689 C1orf134Q5TEV5 83 aa13.4□□□□□ -0.26
UPF1-212ENST00000601689 DERL1Q9BUN8 251 aa13.4□□□□□ -0.26
UPF1-212ENST00000601689 IGHV3-73A0A0B4J1V6 119 aa13.39□□□□□ -0.27
UPF1-212ENST00000601689 RBFOX3A6NFN3 312 aa13.39□□□□□ -0.27
UPF1-212ENST00000601689 M0R381 172 aa13.39□□□□□ -0.27
UPF1-212ENST00000601689 BOLA1Q9Y3E2 137 aa13.39□□□□□ -0.27
UPF1-212ENST00000601689 DMRTA1Q5VZB9 504 aa13.38□□□□□ -0.27
UPF1-212ENST00000601689 LYPD5Q6UWN5 251 aa13.38□□□□□ -0.27
UPF1-212ENST00000601689 Q6ZR54 194 aa13.38□□□□□ -0.27
UPF1-212ENST00000601689 EIF5A2Q9GZV4 153 aaKnown RBP13.38□□□□□ -0.27
UPF1-212ENST00000601689 PARLQ9H300 379 aa13.38□□□□□ -0.27
UPF1-212ENST00000601689 RAB19A4D1S5 217 aa13.37□□□□□ -0.27
UPF1-212ENST00000601689 SIVA1O15304 175 aa13.37□□□□□ -0.27
UPF1-212ENST00000601689 SPANXN1Q5VSR9 72 aa13.37□□□□□ -0.27
UPF1-212ENST00000601689 SLC25A29Q8N8R3 303 aa13.37□□□□□ -0.27
UPF1-212ENST00000601689 TRAV9-2A0A087WT02 112 aa13.36□□□□□ -0.27
UPF1-212ENST00000601689 A0A1W2PPQ1 181 aa13.36□□□□□ -0.27
UPF1-212ENST00000601689 TMEM250H0YL14 139 aa13.36□□□□□ -0.27
UPF1-212ENST00000601689 P01737 135 aa13.36□□□□□ -0.27
UPF1-212ENST00000601689 FAM74A4Q5TZK3 123 aa13.36□□□□□ -0.27
UPF1-212ENST00000601689 LYPD6BQ8NI32 183 aa13.36□□□□□ -0.27
UPF1-212ENST00000601689 SCRT2Q9NQ03 307 aa13.36□□□□□ -0.27
UPF1-212ENST00000601689 NXPH4O95158 308 aa13.35□□□□□ -0.27
UPF1-212ENST00000601689 RPL19P84098 196 aaKnown RBP13.35□□□□□ -0.27
UPF1-212ENST00000601689 SFRP2Q96HF1 295 aa13.35□□□□□ -0.27
UPF1-212ENST00000601689 OR5AL1P0C617 328 aa13.34□□□□□ -0.27
UPF1-212ENST00000601689 BTF3P20290 206 aaKnown RBP13.34□□□□□ -0.27
UPF1-212ENST00000601689 C6orf223Q8N319 242 aa13.34□□□□□ -0.27
UPF1-212ENST00000601689 OR2D3Q8NGH3 330 aa13.34□□□□□ -0.27
UPF1-212ENST00000601689 PRSS29PA6NIE9 313 aa13.33□□□□□ -0.28
UPF1-212ENST00000601689 SMIM17P0DL12 118 aa13.33□□□□□ -0.28
UPF1-212ENST00000601689 CEBPGP53567 150 aa13.33□□□□□ -0.28
UPF1-212ENST00000601689 TOR2AQ5JU69 321 aa13.33□□□□□ -0.28
UPF1-212ENST00000601689 TRAV8-6A0A0B4J262 113 aa13.32□□□□□ -0.28
UPF1-212ENST00000601689 LOC100131303A0A0U1RQF7 123 aa13.32□□□□□ -0.28
UPF1-212ENST00000601689 K7EP13 123 aa13.32□□□□□ -0.28
UPF1-212ENST00000601689 SNAI2O43623 268 aa13.32□□□□□ -0.28
UPF1-212ENST00000601689 NDUFS6O75380 124 aaKnown RBP13.32□□□□□ -0.28
UPF1-212ENST00000601689 IGLV2-8P01709 118 aa13.31□□□□□ -0.28
UPF1-212ENST00000601689 EVI2AP22794 236 aa13.31□□□□□ -0.28
UPF1-212ENST00000601689 TIRAPP58753 221 aa13.31□□□□□ -0.28
UPF1-212ENST00000601689 FER1L6-AS1Q8NA97 138 aa13.31□□□□□ -0.28
UPF1-212ENST00000601689 ATP6V0E2Q8NHE4 81 aa13.31□□□□□ -0.28
UPF1-212ENST00000601689 FAM210AQ96ND0 272 aa13.31□□□□□ -0.28
UPF1-212ENST00000601689 TPPP3Q9BW30 176 aa13.31□□□□□ -0.28
UPF1-212ENST00000601689 SSBP4Q9BWG4 385 aaPredicted RBP13.31□□□□□ -0.28
UPF1-212ENST00000601689 JPT2Q9H910 190 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms