RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 ARMS2P0C7Q2 107 aa11.7□□□□□ -0.54
SHKBP1-219ENST00000599575 SRSF3P84103 164 aaKnown RBP11.7□□□□□ -0.54
SHKBP1-219ENST00000599575 ZNF575Q86XF7 245 aa11.7□□□□□ -0.54
SHKBP1-219ENST00000599575 OR2D3Q8NGH3 330 aa11.7□□□□□ -0.54
SHKBP1-219ENST00000599575 SSBP4Q9BWG4 385 aaPredicted RBP11.7□□□□□ -0.54
SHKBP1-219ENST00000599575 MRPL16Q9NX20 251 aaKnown RBP11.7□□□□□ -0.54
SHKBP1-219ENST00000599575 NAT8Q9UHE5 227 aa11.7□□□□□ -0.54
SHKBP1-219ENST00000599575 PHLDA3Q9Y5J5 127 aa11.7□□□□□ -0.54
SHKBP1-219ENST00000599575 A0A1W2PPQ1 181 aa11.69□□□□□ -0.54
SHKBP1-219ENST00000599575 H3BNG1 76 aa11.69□□□□□ -0.54
SHKBP1-219ENST00000599575 K7EN84 100 aa11.69□□□□□ -0.54
SHKBP1-219ENST00000599575 CT83Q5H943 113 aa11.69□□□□□ -0.54
SHKBP1-219ENST00000599575 NUDT10Q8NFP7 164 aa11.69□□□□□ -0.54
SHKBP1-219ENST00000599575 NUDT11Q96G61 164 aa11.69□□□□□ -0.54
SHKBP1-219ENST00000599575 TENM2Q9NT68 2774 aa11.68□□□□□ -0.54
SHKBP1-219ENST00000599575 TMSB15BA0A087X1C1 80 aa11.68□□□□□ -0.54
SHKBP1-219ENST00000599575 TRAV4A0A0B4J268 109 aa11.68□□□□□ -0.54
SHKBP1-219ENST00000599575 GRIFINA4D1Z8 144 aa11.68□□□□□ -0.54
SHKBP1-219ENST00000599575 A8MWV9 139 aa11.68□□□□□ -0.54
SHKBP1-219ENST00000599575 F2Z2F3 143 aa11.68□□□□□ -0.54
SHKBP1-219ENST00000599575 F5H768 121 aa11.68□□□□□ -0.54
SHKBP1-219ENST00000599575 H3BVH4 76 aa11.68□□□□□ -0.54
SHKBP1-219ENST00000599575 SNAI2O43623 268 aa11.68□□□□□ -0.54
SHKBP1-219ENST00000599575 ZFP82Q8N141 532 aa11.68□□□□□ -0.54
SHKBP1-219ENST00000599575 RPP21Q9H633 154 aaKnown RBP11.68□□□□□ -0.54
SHKBP1-219ENST00000599575 IGLL5B9A064 214 aa11.67□□□□□ -0.54
SHKBP1-219ENST00000599575 HTN3P15516 51 aa11.67□□□□□ -0.54
SHKBP1-219ENST00000599575 ERVFC1-1P60608 527 aa11.67□□□□□ -0.54
SHKBP1-219ENST00000599575 C15orf53Q8NAA6 179 aa11.67□□□□□ -0.54
SHKBP1-219ENST00000599575 OR4C5Q8NGB2 326 aa11.67□□□□□ -0.54
SHKBP1-219ENST00000599575 OSTCQ9NRP0 149 aa11.67□□□□□ -0.54
SHKBP1-219ENST00000599575 IGHV4-4A0A075B6R2 117 aa11.66□□□□□ -0.54
SHKBP1-219ENST00000599575 SFTA3P0C7M3 94 aa11.66□□□□□ -0.54
SHKBP1-219ENST00000599575 RPL19P84098 196 aaKnown RBP11.66□□□□□ -0.54
SHKBP1-219ENST00000599575 ZFP2Q6ZN57 461 aa11.66□□□□□ -0.54
SHKBP1-219ENST00000599575 C15orf54Q8N8G6 183 aa11.66□□□□□ -0.54
SHKBP1-219ENST00000599575 LINC00862A6NCI5 91 aa11.65□□□□□ -0.54
SHKBP1-219ENST00000599575 FAM231BA6NCW3 169 aa11.65□□□□□ -0.54
SHKBP1-219ENST00000599575 A8MWL6 223 aa11.65□□□□□ -0.54
SHKBP1-219ENST00000599575 RS1O15537 224 aa11.65□□□□□ -0.54
SHKBP1-219ENST00000599575 GATCO43716 136 aaKnown RBP11.65□□□□□ -0.54
SHKBP1-219ENST00000599575 NXPH4O95158 308 aa11.65□□□□□ -0.54
SHKBP1-219ENST00000599575 IGLC6P0CF74 106 aa11.65□□□□□ -0.54
SHKBP1-219ENST00000599575 PNRC1Q12796 327 aaPredicted RBP11.65□□□□□ -0.54
SHKBP1-219ENST00000599575 WDR73Q6P4I2 378 aa11.65□□□□□ -0.54
SHKBP1-219ENST00000599575 FER1L6-AS1Q8NA97 138 aa11.65□□□□□ -0.54
SHKBP1-219ENST00000599575 RNASE7Q9H1E1 156 aaKnown RBP11.65□□□□□ -0.54
SHKBP1-219ENST00000599575 PRO0255Q9UI72 69 aa11.65□□□□□ -0.54
SHKBP1-219ENST00000599575 STARD9Q9P2P6 4700 aa11.64□□□□□ -0.55
SHKBP1-219ENST00000599575 RHODO00212 210 aa11.64□□□□□ -0.55
SHKBP1-219ENST00000599575 RPL23P62829 140 aaKnown RBP11.64□□□□□ -0.55
SHKBP1-219ENST00000599575 CACNG7P62955 275 aa11.64□□□□□ -0.55
SHKBP1-219ENST00000599575 CFAP126Q5VTH2 177 aa11.64□□□□□ -0.55
SHKBP1-219ENST00000599575 ISOC2Q96AB3 205 aa11.64□□□□□ -0.55
SHKBP1-219ENST00000599575 TRGV4A0A0C4DH28 118 aa11.63□□□□□ -0.55
SHKBP1-219ENST00000599575 HOXA5P20719 270 aa11.63□□□□□ -0.55
SHKBP1-219ENST00000599575 FHL2Q14192 279 aa11.63□□□□□ -0.55
SHKBP1-219ENST00000599575 SPANXN1Q5VSR9 72 aa11.63□□□□□ -0.55
SHKBP1-219ENST00000599575 DMRTA1Q5VZB9 504 aa11.63□□□□□ -0.55
SHKBP1-219ENST00000599575 TMEM88Q6PEY1 159 aa11.63□□□□□ -0.55
SHKBP1-219ENST00000599575 POM121L12Q8N7R1 296 aa11.63□□□□□ -0.55
SHKBP1-219ENST00000599575 SFRP2Q96HF1 295 aa11.63□□□□□ -0.55
SHKBP1-219ENST00000599575 GFRA4Q9GZZ7 299 aa11.63□□□□□ -0.55
SHKBP1-219ENST00000599575 APLNQ9ULZ1 77 aa11.63□□□□□ -0.55
SHKBP1-219ENST00000599575 HHLA3Q9XRX5 114 aa11.63□□□□□ -0.55
SHKBP1-219ENST00000599575 FOXA3P55318 350 aaPredicted RBP11.62□□□□□ -0.55
SHKBP1-219ENST00000599575 ADIRFQ15847 76 aa11.62□□□□□ -0.55
SHKBP1-219ENST00000599575 ZNF479Q96JC4 524 aa11.62□□□□□ -0.55
SHKBP1-219ENST00000599575 CNFNQ9BYD5 112 aa11.62□□□□□ -0.55
SHKBP1-219ENST00000599575 TRAV26-1A0A087WT03 109 aa11.61□□□□□ -0.55
SHKBP1-219ENST00000599575 M0R381 172 aa11.61□□□□□ -0.55
SHKBP1-219ENST00000599575 CTRLP40313 264 aa11.61□□□□□ -0.55
SHKBP1-219ENST00000599575 COMMD7Q86VX2 200 aa11.61□□□□□ -0.55
SHKBP1-219ENST00000599575 OR10AG1Q8NH19 301 aa11.61□□□□□ -0.55
SHKBP1-219ENST00000599575 TSKUQ8WUA8 353 aa11.61□□□□□ -0.55
SHKBP1-219ENST00000599575 DYNC2H1Q8NCM8 4307 aaKnown RBP11.61□□□□□ -0.55
SHKBP1-219ENST00000599575 TRBV6-4A0A1B0GX49 114 aa11.6□□□□□ -0.55
SHKBP1-219ENST00000599575 TMEM218A2RU14 115 aa11.6□□□□□ -0.55
SHKBP1-219ENST00000599575 PAX4O43316 350 aa11.6□□□□□ -0.55
SHKBP1-219ENST00000599575 IGHV3-53P01767 116 aa11.6□□□□□ -0.55
SHKBP1-219ENST00000599575 CRYBA4P53673 196 aa11.6□□□□□ -0.55
SHKBP1-219ENST00000599575 OR10G8Q8NGN5 311 aa11.6□□□□□ -0.55
SHKBP1-219ENST00000599575 PPP1R2P9O14990 202 aa11.59□□□□□ -0.55
SHKBP1-219ENST00000599575 P0DMU3 169 aa11.59□□□□□ -0.55
SHKBP1-219ENST00000599575 FAM231AP0DMU4 169 aa11.59□□□□□ -0.55
SHKBP1-219ENST00000599575 FAM231CP0DMU5 169 aa11.59□□□□□ -0.55
SHKBP1-219ENST00000599575 GZMBP10144 247 aa11.59□□□□□ -0.55
SHKBP1-219ENST00000599575 GATA1P15976 413 aaPredicted RBP11.59□□□□□ -0.55
SHKBP1-219ENST00000599575 LGALS9CQ6DKI2 356 aa11.59□□□□□ -0.55
SHKBP1-219ENST00000599575 AP1S3Q96PC3 154 aa11.59□□□□□ -0.55
SHKBP1-219ENST00000599575 TPPP3Q9BW30 176 aa11.59□□□□□ -0.55
SHKBP1-219ENST00000599575 UFSP1Q6NVU6 142 aa11.58□□□□□ -0.56
SHKBP1-219ENST00000599575 LYZL1Q6UWQ5 148 aa11.58□□□□□ -0.56
SHKBP1-219ENST00000599575 SH2D6Q7Z4S9 175 aa11.58□□□□□ -0.56
SHKBP1-219ENST00000599575 VSIG2Q96IQ7 327 aa11.58□□□□□ -0.56
SHKBP1-219ENST00000599575 SEC11CQ9BY50 192 aa11.58□□□□□ -0.56
SHKBP1-219ENST00000599575 V9GYV3 84 aa11.58□□□□□ -0.56
SHKBP1-219ENST00000599575 MUC4Q99102 2169 aa11.58□□□□□ -0.56
SHKBP1-219ENST00000599575 TRGC1P0CF51 173 aa11.57□□□□□ -0.56
SHKBP1-219ENST00000599575 RHOHQ15669 191 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 1183.4 ms