RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 Q5VSD8 79 aa9.14□□□□□ -0.95
TRIM28-211ENST00000597968 RPL7L1Q6DKI1 246 aaKnown RBP9.14□□□□□ -0.95
TRIM28-211ENST00000597968 TM2D2Q9BX73 214 aa9.14□□□□□ -0.95
TRIM28-211ENST00000597968 NKX6-2Q9C056 277 aaPredicted RBP9.14□□□□□ -0.95
TRIM28-211ENST00000597968 GTSF1LQ9H1H1 148 aa9.14□□□□□ -0.95
TRIM28-211ENST00000597968 EPDR1Q9UM22 224 aa9.14□□□□□ -0.95
TRIM28-211ENST00000597968 PSG8Q9UQ74 426 aa9.14□□□□□ -0.95
TRIM28-211ENST00000597968 FXYD6-FXYD2A0A087WZ82 144 aa9.13□□□□□ -0.95
TRIM28-211ENST00000597968 IGLV5-52A0A0A0MRZ9 124 aa9.13□□□□□ -0.95
TRIM28-211ENST00000597968 LOC100131303A0A0U1RQF7 123 aa9.13□□□□□ -0.95
TRIM28-211ENST00000597968 RNF222A6NCQ9 220 aa9.13□□□□□ -0.95
TRIM28-211ENST00000597968 A8MWV9 139 aa9.13□□□□□ -0.95
TRIM28-211ENST00000597968 FAM229AH3BQW9 127 aa9.13□□□□□ -0.95
TRIM28-211ENST00000597968 GIPP09681 153 aaPredicted RBP9.13□□□□□ -0.95
TRIM28-211ENST00000597968 ZNF80P51504 273 aaPredicted RBP9.13□□□□□ -0.95
TRIM28-211ENST00000597968 SUMO1P63165 101 aaKnown RBP9.13□□□□□ -0.95
TRIM28-211ENST00000597968 IGLV2-11P01706 119 aa9.12□□□□□ -0.95
TRIM28-211ENST00000597968 TOR2AQ5JU69 321 aa9.12□□□□□ -0.95
TRIM28-211ENST00000597968 Q8N814 137 aa9.12□□□□□ -0.95
TRIM28-211ENST00000597968 INO80EQ8NBZ0 244 aaPredicted RBP9.12□□□□□ -0.95
TRIM28-211ENST00000597968 ATP6V0E2Q8NHE4 81 aa9.12□□□□□ -0.95
TRIM28-211ENST00000597968 ACTR3CQ9C0K3 210 aaPredicted RBP9.12□□□□□ -0.95
TRIM28-211ENST00000597968 C11orf21Q9P2W6 132 aa9.12□□□□□ -0.95
TRIM28-211ENST00000597968 COX11Q9Y6N1 276 aa9.12□□□□□ -0.95
TRIM28-211ENST00000597968 VPS13BQ7Z7G8 4022 aa9.12□□□□□ -0.95
TRIM28-211ENST00000597968 A0A087WWC5 75 aa9.11□□□□□ -0.95
TRIM28-211ENST00000597968 TRAV8-3A0A0A6YYJ7 113 aa9.11□□□□□ -0.95
TRIM28-211ENST00000597968 GGTLC3B5MD39 225 aa9.11□□□□□ -0.95
TRIM28-211ENST00000597968 G3V3Q6 166 aa9.11□□□□□ -0.95
TRIM28-211ENST00000597968 RNASE3P12724 160 aaKnown RBP9.11□□□□□ -0.95
TRIM28-211ENST00000597968 FGF8P55075 233 aaPredicted RBP9.11□□□□□ -0.95
TRIM28-211ENST00000597968 ZNF726P1Q15940 193 aa9.11□□□□□ -0.95
TRIM28-211ENST00000597968 ZNF506Q5JVG8 444 aa9.11□□□□□ -0.95
TRIM28-211ENST00000597968 DPPA3Q6W0C5 159 aa9.11□□□□□ -0.95
TRIM28-211ENST00000597968 PRNTQ86SH4 94 aa9.11□□□□□ -0.95
TRIM28-211ENST00000597968 OR2T35Q8NGX2 323 aa9.11□□□□□ -0.95
TRIM28-211ENST00000597968 LINC00479Q96M42 142 aa9.11□□□□□ -0.95
TRIM28-211ENST00000597968 PGPEP1LA6NFU8 196 aa9.1□□□□□ -0.95
TRIM28-211ENST00000597968 FABP5P3A8MUU1 101 aa9.1□□□□□ -0.95
TRIM28-211ENST00000597968 SEC11BP0C7V7 166 aa9.1□□□□□ -0.95
TRIM28-211ENST00000597968 DNLZQ5SXM8 178 aa9.1□□□□□ -0.95
TRIM28-211ENST00000597968 IL36BQ9NZH7 164 aa9.1□□□□□ -0.95
TRIM28-211ENST00000597968 TRAV34A0A0B4J273 112 aa9.09□□□□□ -0.95
TRIM28-211ENST00000597968 SMLR1H3BR10 107 aa9.09□□□□□ -0.95
TRIM28-211ENST00000597968 RHODO00212 210 aa9.09□□□□□ -0.95
TRIM28-211ENST00000597968 S100A4P26447 101 aaKnown RBP9.09□□□□□ -0.95
TRIM28-211ENST00000597968 FUSP35637 526 aaKnown RBP eCLIP9.09□□□□□ -0.95
TRIM28-211ENST00000597968 COX8CQ7Z4L0 72 aa9.09□□□□□ -0.95
TRIM28-211ENST00000597968 HIST1H2BAQ96A08 127 aa9.09□□□□□ -0.95
TRIM28-211ENST00000597968 PARLQ9H300 379 aa9.09□□□□□ -0.95
TRIM28-211ENST00000597968 MYCBP2O75592 4640 aa9.09□□□□□ -0.95
TRIM28-211ENST00000597968 DNAH8Q96JB1 4490 aa9.08□□□□□ -0.96
TRIM28-211ENST00000597968 BORCS7-ASMTA0A0B4J1R7 106 aa9.08□□□□□ -0.96
TRIM28-211ENST00000597968 LINC00694P0DN24 101 aa9.08□□□□□ -0.96
TRIM28-211ENST00000597968 ASIPP42127 132 aa9.08□□□□□ -0.96
TRIM28-211ENST00000597968 UBE2G2P60604 165 aa9.08□□□□□ -0.96
TRIM28-211ENST00000597968 TCEAL7Q9BRU2 100 aa9.08□□□□□ -0.96
TRIM28-211ENST00000597968 IGHV3-73A0A0B4J1V6 119 aa9.07□□□□□ -0.96
TRIM28-211ENST00000597968 IGKV3D-20A0A0C4DH25 116 aa9.07□□□□□ -0.96
TRIM28-211ENST00000597968 CTXND1A0A1B0GTU2 59 aa9.07□□□□□ -0.96
TRIM28-211ENST00000597968 ARPC5O15511 151 aa9.07□□□□□ -0.96
TRIM28-211ENST00000597968 RGS21Q2M5E4 152 aa9.07□□□□□ -0.96
TRIM28-211ENST00000597968 Q6ZSN1 163 aa9.07□□□□□ -0.96
TRIM28-211ENST00000597968 SYT8Q8NBV8 401 aa9.07□□□□□ -0.96
TRIM28-211ENST00000597968 Q9HAA7 133 aa9.07□□□□□ -0.96
TRIM28-211ENST00000597968 CYTL1Q9NRR1 136 aa9.07□□□□□ -0.96
TRIM28-211ENST00000597968 ZFP30Q9Y2G7 519 aa9.07□□□□□ -0.96
TRIM28-211ENST00000597968 ARL2-SNX15V9GYD0 113 aa9.07□□□□□ -0.96
TRIM28-211ENST00000597968 IFNA7P01567 189 aa9.06□□□□□ -0.96
TRIM28-211ENST00000597968 IGHV3-30P01768 117 aa9.06□□□□□ -0.96
TRIM28-211ENST00000597968 IGHV3-33P01772 117 aa9.06□□□□□ -0.96
TRIM28-211ENST00000597968 IGHV3-30-3P0DP02 117 aa9.06□□□□□ -0.96
TRIM28-211ENST00000597968 IGHV3-30-5P0DP03 117 aa9.06□□□□□ -0.96
TRIM28-211ENST00000597968 RMI2Q96E14 147 aa9.06□□□□□ -0.96
TRIM28-211ENST00000597968 CHCHD7Q9BUK0 85 aa9.06□□□□□ -0.96
TRIM28-211ENST00000597968 LGALSLQ3ZCW2 172 aaPredicted RBP9.05□□□□□ -0.96
TRIM28-211ENST00000597968 AKR1C8PQ5T2L2 129 aa9.05□□□□□ -0.96
TRIM28-211ENST00000597968 UFSP1Q6NVU6 142 aa9.05□□□□□ -0.96
TRIM28-211ENST00000597968 SRRM2Q9UQ35 2752 aaKnown RBP9.04□□□□□ -0.96
TRIM28-211ENST00000597968 TRBV10-1A0A0K0K1A3 114 aa9.04□□□□□ -0.96
TRIM28-211ENST00000597968 FAM74A7A6NL05 159 aa9.04□□□□□ -0.96
TRIM28-211ENST00000597968 PEX7O00628 323 aa9.04□□□□□ -0.96
TRIM28-211ENST00000597968 SMR3BP02814 79 aaPredicted RBP9.04□□□□□ -0.96
TRIM28-211ENST00000597968 FHITP49789 147 aa9.04□□□□□ -0.96
TRIM28-211ENST00000597968 ELOBQ15370 118 aa9.04□□□□□ -0.96
TRIM28-211ENST00000597968 Q6ZSA8 131 aa9.04□□□□□ -0.96
TRIM28-211ENST00000597968 FMC1Q96HJ9 113 aa9.04□□□□□ -0.96
TRIM28-211ENST00000597968 DMBT1Q9UGM3 2413 aaPredicted RBP9.03□□□□□ -0.96
TRIM28-211ENST00000597968 TRBV6-1A0A0K0K1D8 114 aa9.03□□□□□ -0.96
TRIM28-211ENST00000597968 GAGE12JA6NER3 117 aa9.03□□□□□ -0.96
TRIM28-211ENST00000597968 B4DEV8 164 aa9.03□□□□□ -0.96
TRIM28-211ENST00000597968 CRIP1P50238 77 aa9.03□□□□□ -0.96
TRIM28-211ENST00000597968 GAGE1Q13065 139 aa9.03□□□□□ -0.96
TRIM28-211ENST00000597968 GAGE4Q13068 117 aa9.03□□□□□ -0.96
TRIM28-211ENST00000597968 GAGE5Q13069 117 aa9.03□□□□□ -0.96
TRIM28-211ENST00000597968 GAGE13Q4V321 117 aa9.03□□□□□ -0.96
TRIM28-211ENST00000597968 Q86TA4 180 aa9.03□□□□□ -0.96
TRIM28-211ENST00000597968 OR11H4Q8NGC9 324 aa9.03□□□□□ -0.96
TRIM28-211ENST00000597968 URGCP-MRPS24S4R325 110 aa9.03□□□□□ -0.96
TRIM28-211ENST00000597968 MAP1LC3B2A6NCE7 125 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms