RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 ALKAL2Q6UX46 152 aa13.88□□□□□ -0.19
SS18-218ENST00000581021 OR4C5Q8NGB2 326 aa13.88□□□□□ -0.19
SS18-218ENST00000581021 GRIFINA4D1Z8 144 aa13.87□□□□□ -0.19
SS18-218ENST00000581021 CFAP126Q5VTH2 177 aa13.87□□□□□ -0.19
SS18-218ENST00000581021 TMSB15BA0A087X1C1 80 aa13.86□□□□□ -0.19
SS18-218ENST00000581021 H3BVH4 76 aa13.86□□□□□ -0.19
SS18-218ENST00000581021 RS1O15537 224 aa13.86□□□□□ -0.19
SS18-218ENST00000581021 ASIPP42127 132 aa13.86□□□□□ -0.19
SS18-218ENST00000581021 RPL35P42766 123 aaKnown RBP13.86□□□□□ -0.19
SS18-218ENST00000581021 LINC01559Q495D7 138 aa13.86□□□□□ -0.19
SS18-218ENST00000581021 BAGE2Q86Y30 109 aa13.86□□□□□ -0.19
SS18-218ENST00000581021 PTH2Q96A98 100 aa13.86□□□□□ -0.19
SS18-218ENST00000581021 KRTAP1-5Q9BYS1 174 aa13.86□□□□□ -0.19
SS18-218ENST00000581021 ICOSQ9Y6W8 199 aa13.86□□□□□ -0.19
SS18-218ENST00000581021 LOC100131303A0A0U1RQF7 123 aa13.85□□□□□ -0.19
SS18-218ENST00000581021 S100A9P06702 114 aaKnown RBP13.85□□□□□ -0.19
SS18-218ENST00000581021 GATA1P15976 413 aaPredicted RBP13.85□□□□□ -0.19
SS18-218ENST00000581021 SLAQ13239 276 aa13.85□□□□□ -0.19
SS18-218ENST00000581021 DNLZQ5SXM8 178 aa13.85□□□□□ -0.19
SS18-218ENST00000581021 UPK3BQ9BT76 320 aa13.85□□□□□ -0.19
SS18-218ENST00000581021 IL36BQ9NZH7 164 aa13.85□□□□□ -0.19
SS18-218ENST00000581021 MRPS16Q9Y3D3 137 aaKnown RBP13.85□□□□□ -0.19
SS18-218ENST00000581021 NBDYA0A0U1RRE5 68 aa13.84□□□□□ -0.19
SS18-218ENST00000581021 K7EQD1 137 aa13.84□□□□□ -0.19
SS18-218ENST00000581021 BCL2P10415 239 aa13.84□□□□□ -0.19
SS18-218ENST00000581021 RPL19P84098 196 aaKnown RBP13.84□□□□□ -0.19
SS18-218ENST00000581021 MEF2BQ02080 365 aaPredicted RBP13.84□□□□□ -0.19
SS18-218ENST00000581021 IGHV3-73A0A0B4J1V6 119 aa13.83□□□□□ -0.2
SS18-218ENST00000581021 TEX46H3BTG2 121 aa13.83□□□□□ -0.2
SS18-218ENST00000581021 GYPEP15421 78 aa13.83□□□□□ -0.2
SS18-218ENST00000581021 S100A4P26447 101 aaKnown RBP13.83□□□□□ -0.2
SS18-218ENST00000581021 JPT2Q9H910 190 aa13.83□□□□□ -0.2
SS18-218ENST00000581021 SCRT2Q9NQ03 307 aa13.83□□□□□ -0.2
SS18-218ENST00000581021 IGLV2-8P01709 118 aa13.82□□□□□ -0.2
SS18-218ENST00000581021 ARMS2P0C7Q2 107 aa13.82□□□□□ -0.2
SS18-218ENST00000581021 CENPWQ5EE01 88 aa13.82□□□□□ -0.2
SS18-218ENST00000581021 Q6ZSN1 163 aa13.82□□□□□ -0.2
SS18-218ENST00000581021 Q9H8V8 135 aa13.82□□□□□ -0.2
SS18-218ENST00000581021 PKD1P98161 4303 aa13.81□□□□□ -0.2
SS18-218ENST00000581021 TRBV20OR9-2A0A075B6H5 130 aa13.81□□□□□ -0.2
SS18-218ENST00000581021 RAB19A4D1S5 217 aa13.81□□□□□ -0.2
SS18-218ENST00000581021 MRPL23Q16540 153 aaKnown RBP13.81□□□□□ -0.2
SS18-218ENST00000581021 DMRTA1Q5VZB9 504 aa13.81□□□□□ -0.2
SS18-218ENST00000581021 SLC25A29Q8N8R3 303 aa13.81□□□□□ -0.2
SS18-218ENST00000581021 TXNDC17Q9BRA2 123 aa13.81□□□□□ -0.2
SS18-218ENST00000581021 SAMD10Q9BYL1 202 aa13.81□□□□□ -0.2
SS18-218ENST00000581021 PARLQ9H300 379 aa13.81□□□□□ -0.2
SS18-218ENST00000581021 PRR27Q6MZM9 219 aa13.8□□□□□ -0.2
SS18-218ENST00000581021 UFSP1Q6NVU6 142 aa13.8□□□□□ -0.2
SS18-218ENST00000581021 LYPD5Q6UWN5 251 aa13.8□□□□□ -0.2
SS18-218ENST00000581021 IFNA1P01562 189 aa13.79□□□□□ -0.2
SS18-218ENST00000581021 SRIP30626 198 aa13.79□□□□□ -0.2
SS18-218ENST00000581021 PIK3CD-AS1Q5SR53 167 aa13.79□□□□□ -0.2
SS18-218ENST00000581021 NEGR1Q7Z3B1 354 aa13.79□□□□□ -0.2
SS18-218ENST00000581021 VAX2Q9UIW0 290 aa13.79□□□□□ -0.2
SS18-218ENST00000581021 PKHD1P08F94 4074 aa13.79□□□□□ -0.2
SS18-218ENST00000581021 A0A1B0GVY2 172 aa13.78□□□□□ -0.2
SS18-218ENST00000581021 PDE6DO43924 150 aa13.78□□□□□ -0.2
SS18-218ENST00000581021 NXPH4O95158 308 aa13.78□□□□□ -0.2
SS18-218ENST00000581021 LYPD6BQ8NI32 183 aa13.78□□□□□ -0.2
SS18-218ENST00000581021 C1orf134Q5TEV5 83 aa13.77□□□□□ -0.21
SS18-218ENST00000581021 LINC00336Q6ZUF6 198 aa13.77□□□□□ -0.21
SS18-218ENST00000581021 PCNPQ8WW12 178 aaKnown RBP13.77□□□□□ -0.21
SS18-218ENST00000581021 DNAH11Q96DT5 4516 aa13.77□□□□□ -0.21
SS18-218ENST00000581021 MED9Q9NWA0 146 aa13.77□□□□□ -0.21
SS18-218ENST00000581021 Q9UF83 564 aa13.77□□□□□ -0.21
SS18-218ENST00000581021 A8MWV9 139 aa13.76□□□□□ -0.21
SS18-218ENST00000581021 TRBV6-4A0A1B0GX49 114 aa13.75□□□□□ -0.21
SS18-218ENST00000581021 PRSS29PA6NIE9 313 aa13.75□□□□□ -0.21
SS18-218ENST00000581021 M0R381 172 aa13.75□□□□□ -0.21
SS18-218ENST00000581021 BLOC1S1P78537 153 aa13.75□□□□□ -0.21
SS18-218ENST00000581021 ZFP2Q6ZN57 461 aa13.75□□□□□ -0.21
SS18-218ENST00000581021 OR10AG1Q8NH19 301 aa13.75□□□□□ -0.21
SS18-218ENST00000581021 PHLDA3Q9Y5J5 127 aa13.75□□□□□ -0.21
SS18-218ENST00000581021 CIDEAO60543 219 aa13.74□□□□□ -0.21
SS18-218ENST00000581021 CXCL1P09341 107 aa13.74□□□□□ -0.21
SS18-218ENST00000581021 MED14OSP0DP75 135 aa13.74□□□□□ -0.21
SS18-218ENST00000581021 GNG4P50150 75 aa13.74□□□□□ -0.21
SS18-218ENST00000581021 RHOHQ15669 191 aa13.74□□□□□ -0.21
SS18-218ENST00000581021 DYNC1H1Q14204 4646 aaKnown RBP13.74□□□□□ -0.21
SS18-218ENST00000581021 A0A087WWL8 130 aa13.73□□□□□ -0.21
SS18-218ENST00000581021 MUC21A0A0G2JKD1 596 aa13.73□□□□□ -0.21
SS18-218ENST00000581021 MUC21A0A140T8X8 626 aa13.73□□□□□ -0.21
SS18-218ENST00000581021 C19orf71A6NCJ1 209 aa13.73□□□□□ -0.21
SS18-218ENST00000581021 CRYGDP07320 174 aa13.73□□□□□ -0.21
SS18-218ENST00000581021 LINC00694P0DN24 101 aa13.73□□□□□ -0.21
SS18-218ENST00000581021 MGST1P10620 155 aaKnown RBP13.73□□□□□ -0.21
SS18-218ENST00000581021 TAGLN2P37802 199 aaKnown RBP13.73□□□□□ -0.21
SS18-218ENST00000581021 WFDC10BQ8IUB3 73 aa13.73□□□□□ -0.21
SS18-218ENST00000581021 C6orf223Q8N319 242 aa13.73□□□□□ -0.21
SS18-218ENST00000581021 C14orf178Q8N769 122 aaPredicted RBP13.73□□□□□ -0.21
SS18-218ENST00000581021 SYT8Q8NBV8 401 aa13.73□□□□□ -0.21
SS18-218ENST00000581021 SFRP2Q96HF1 295 aa13.73□□□□□ -0.21
SS18-218ENST00000581021 SSBP4Q9BWG4 385 aaPredicted RBP13.73□□□□□ -0.21
SS18-218ENST00000581021 RBFOX3A6NFN3 312 aa13.72□□□□□ -0.21
SS18-218ENST00000581021 SIVA1O15304 175 aa13.72□□□□□ -0.21
SS18-218ENST00000581021 SNAI2O43623 268 aa13.72□□□□□ -0.21
SS18-218ENST00000581021 GZMBP10144 247 aa13.72□□□□□ -0.21
SS18-218ENST00000581021 ZFP82Q8N141 532 aa13.72□□□□□ -0.21
SS18-218ENST00000581021 PRADC1Q9BSG0 188 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms