RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 TWIST1Q15672 202 aa9.95□□□□□ -0.82
CCDC40-209ENST00000573474 TMEM136Q6ZRR5 245 aa9.95□□□□□ -0.82
CCDC40-209ENST00000573474 OR10AG1Q8NH19 301 aa9.95□□□□□ -0.82
CCDC40-209ENST00000573474 C9orf85Q96MD7 179 aa9.95□□□□□ -0.82
CCDC40-209ENST00000573474 MDFICQ9P1T7 246 aa9.95□□□□□ -0.82
CCDC40-209ENST00000573474 PHLDA3Q9Y5J5 127 aa9.95□□□□□ -0.82
CCDC40-209ENST00000573474 TRAPPC1Q9Y5R8 145 aa9.95□□□□□ -0.82
CCDC40-209ENST00000573474 IGHV3OR16-12A0A075B7B8 117 aa9.94□□□□□ -0.82
CCDC40-209ENST00000573474 SNURFLB1AK76 121 aa9.94□□□□□ -0.82
CCDC40-209ENST00000573474 UBE2CO00762 179 aa9.94□□□□□ -0.82
CCDC40-209ENST00000573474 SSTP61278 116 aa9.94□□□□□ -0.82
CCDC40-209ENST00000573474 SPANXN1Q5VSR9 72 aa9.94□□□□□ -0.82
CCDC40-209ENST00000573474 C1orf196B1AJZ1 125 aa9.93□□□□□ -0.82
CCDC40-209ENST00000573474 HLA-DQA1P01909 254 aa9.93□□□□□ -0.82
CCDC40-209ENST00000573474 TRGC2P03986 189 aa9.93□□□□□ -0.82
CCDC40-209ENST00000573474 ZNF415Q09FC8 603 aa9.93□□□□□ -0.82
CCDC40-209ENST00000573474 KPRPQ5T749 579 aaPredicted RBP9.93□□□□□ -0.82
CCDC40-209ENST00000573474 ZNF705AQ6ZN79 300 aaPredicted RBP9.93□□□□□ -0.82
CCDC40-209ENST00000573474 GATD1Q8NB37 220 aa9.93□□□□□ -0.82
CCDC40-209ENST00000573474 NXPH4O95158 308 aa9.92□□□□□ -0.82
CCDC40-209ENST00000573474 PRM2P04554 102 aa9.92□□□□□ -0.82
CCDC40-209ENST00000573474 FABP9Q0Z7S8 132 aa9.92□□□□□ -0.82
CCDC40-209ENST00000573474 ZNF493Q6ZR52 646 aa9.92□□□□□ -0.82
CCDC40-209ENST00000573474 ZFP82Q8N141 532 aa9.92□□□□□ -0.82
CCDC40-209ENST00000573474 FRZBQ92765 325 aa9.92□□□□□ -0.82
CCDC40-209ENST00000573474 MRPL18Q9H0U6 180 aaKnown RBP9.92□□□□□ -0.82
CCDC40-209ENST00000573474 MSRB1Q9NZV6 116 aa9.92□□□□□ -0.82
CCDC40-209ENST00000573474 DNAH3Q8TD57 4116 aa9.91□□□□□ -0.82
CCDC40-209ENST00000573474 M0R381 172 aa9.91□□□□□ -0.82
CCDC40-209ENST00000573474 SPRY2O43597 315 aa9.91□□□□□ -0.82
CCDC40-209ENST00000573474 APCSP02743 223 aa9.91□□□□□ -0.82
CCDC40-209ENST00000573474 AZU1P20160 251 aa9.91□□□□□ -0.82
CCDC40-209ENST00000573474 SMIM15Q7Z3B0 74 aa9.91□□□□□ -0.82
CCDC40-209ENST00000573474 C11orf72Q8NBR9 251 aa9.91□□□□□ -0.82
CCDC40-209ENST00000573474 SYT8Q8NBV8 401 aa9.91□□□□□ -0.82
CCDC40-209ENST00000573474 SPXQ9BT56 116 aa9.91□□□□□ -0.82
CCDC40-209ENST00000573474 GSN-AS1Q9NRJ2 163 aa9.91□□□□□ -0.82
CCDC40-209ENST00000573474 PHOX2AO14813 284 aa9.9□□□□□ -0.82
CCDC40-209ENST00000573474 TRGC1P0CF51 173 aa9.9□□□□□ -0.82
CCDC40-209ENST00000573474 RRN3P1Q2M238 152 aa9.9□□□□□ -0.82
CCDC40-209ENST00000573474 DMRTA1Q5VZB9 504 aa9.9□□□□□ -0.82
CCDC40-209ENST00000573474 TMEM263Q8WUH6 116 aaKnown RBP9.9□□□□□ -0.82
CCDC40-209ENST00000573474 PTH2Q96A98 100 aa9.9□□□□□ -0.82
CCDC40-209ENST00000573474 RCHY1Q96PM5 261 aa9.9□□□□□ -0.82
CCDC40-209ENST00000573474 TMEM191AQ9H0A3 160 aa9.9□□□□□ -0.82
CCDC40-209ENST00000573474 SMIM9A6NGZ8 99 aa9.89□□□□□ -0.83
CCDC40-209ENST00000573474 M0R2P5 195 aa9.89□□□□□ -0.83
CCDC40-209ENST00000573474 RAB5BP61020 215 aa9.89□□□□□ -0.83
CCDC40-209ENST00000573474 Q6ZWC4 215 aa9.89□□□□□ -0.83
CCDC40-209ENST00000573474 RNASE8Q8TDE3 154 aaKnown RBP9.89□□□□□ -0.83
CCDC40-209ENST00000573474 C16orf74Q96GX8 76 aa9.89□□□□□ -0.83
CCDC40-209ENST00000573474 SLAQ13239 276 aa9.88□□□□□ -0.83
CCDC40-209ENST00000573474 DEFB135Q30KP9 77 aa9.88□□□□□ -0.83
CCDC40-209ENST00000573474 ZNF876PQ49A33 203 aa9.88□□□□□ -0.83
CCDC40-209ENST00000573474 PIK3CD-AS1Q5SR53 167 aa9.88□□□□□ -0.83
CCDC40-209ENST00000573474 FAM104BQ5XKR9 115 aa9.88□□□□□ -0.83
CCDC40-209ENST00000573474 TMA7Q9Y2S6 64 aaKnown RBP9.88□□□□□ -0.83
CCDC40-209ENST00000573474 EVI2AP22794 236 aa9.87□□□□□ -0.83
CCDC40-209ENST00000573474 IL17DQ8TAD2 202 aa9.87□□□□□ -0.83
CCDC40-209ENST00000573474 RNF183Q96D59 192 aa9.87□□□□□ -0.83
CCDC40-209ENST00000573474 AP1S3Q96PC3 154 aa9.87□□□□□ -0.83
CCDC40-209ENST00000573474 DAZ2Q13117 558 aaKnown RBP9.86□□□□□ -0.83
CCDC40-209ENST00000573474 KIAA1644Q3SXP7 199 aa9.86□□□□□ -0.83
CCDC40-209ENST00000573474 AMN1Q8IY45 258 aa9.86□□□□□ -0.83
CCDC40-209ENST00000573474 NDUFAF3Q9BU61 184 aa9.86□□□□□ -0.83
CCDC40-209ENST00000573474 DPH3P1Q9H4G8 78 aa9.86□□□□□ -0.83
CCDC40-209ENST00000573474 X6R8D5 127 aa9.86□□□□□ -0.83
CCDC40-209ENST00000573474 K7EIL1 84 aa9.85□□□□□ -0.83
CCDC40-209ENST00000573474 PRB2P02812 416 aaPredicted RBP9.85□□□□□ -0.83
CCDC40-209ENST00000573474 SMIM17P0DL12 118 aa9.85□□□□□ -0.83
CCDC40-209ENST00000573474 RAB4AP20338 218 aa9.85□□□□□ -0.83
CCDC40-209ENST00000573474 C14orf178Q8N769 122 aaPredicted RBP9.85□□□□□ -0.83
CCDC40-209ENST00000573474 OR11H2Q8NH07 326 aa9.85□□□□□ -0.83
CCDC40-209ENST00000573474 RASL10AQ92737 203 aa9.85□□□□□ -0.83
CCDC40-209ENST00000573474 RNF185Q96GF1 192 aa9.85□□□□□ -0.83
CCDC40-209ENST00000573474 OVOL2Q9BRP0 275 aa9.85□□□□□ -0.83
CCDC40-209ENST00000573474 MUC4Q99102 2169 aa9.85□□□□□ -0.83
CCDC40-209ENST00000573474 MGAM2Q2M2H8 2515 aa9.84□□□□□ -0.83
CCDC40-209ENST00000573474 PLAC8L1A1L4L8 177 aa9.84□□□□□ -0.83
CCDC40-209ENST00000573474 HIST1H2BKO60814 126 aa9.84□□□□□ -0.83
CCDC40-209ENST00000573474 HIST1H2BJP06899 126 aa9.84□□□□□ -0.83
CCDC40-209ENST00000573474 HIST1H2BOP23527 126 aa9.84□□□□□ -0.83
CCDC40-209ENST00000573474 HIST1H2BBP33778 126 aa9.84□□□□□ -0.83
CCDC40-209ENST00000573474 HIST1H2BDP58876 126 aa9.84□□□□□ -0.83
CCDC40-209ENST00000573474 HIST1H2BCP62807 126 aa9.84□□□□□ -0.83
CCDC40-209ENST00000573474 HIST2H2BEQ16778 126 aa9.84□□□□□ -0.83
CCDC40-209ENST00000573474 LGALS9BQ3B8N2 356 aa9.84□□□□□ -0.83
CCDC40-209ENST00000573474 MRPL51Q4U2R6 128 aaKnown RBP9.84□□□□□ -0.83
CCDC40-209ENST00000573474 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.84□□□□□ -0.83
CCDC40-209ENST00000573474 HIST1H2BHQ93079 126 aa9.84□□□□□ -0.83
CCDC40-209ENST00000573474 HIST1H2BNQ99877 126 aa9.84□□□□□ -0.83
CCDC40-209ENST00000573474 HIST1H2BMQ99879 126 aa9.84□□□□□ -0.83
CCDC40-209ENST00000573474 JPT2Q9H910 190 aa9.84□□□□□ -0.83
CCDC40-209ENST00000573474 NOP10Q9NPE3 64 aaKnown RBP9.84□□□□□ -0.83
CCDC40-209ENST00000573474 TP53TG1Q9Y2A0 90 aa9.84□□□□□ -0.83
CCDC40-209ENST00000573474 KIF25-AS1Q9Y6Z4 181 aa9.84□□□□□ -0.83
CCDC40-209ENST00000573474 A8MWV9 139 aa9.83□□□□□ -0.84
CCDC40-209ENST00000573474 MIFP14174 115 aa9.83□□□□□ -0.84
CCDC40-209ENST00000573474 SRIP30626 198 aa9.83□□□□□ -0.84
CCDC40-209ENST00000573474 ALKBH7Q9BT30 221 aaPredicted RBP9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms