RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 MED14OSP0DP75 135 aa12.14□□□□□ -0.47
CLN3-217ENST00000565354 LINC01559Q495D7 138 aa12.14□□□□□ -0.47
CLN3-217ENST00000565354 PARLQ9H300 379 aa12.14□□□□□ -0.47
CLN3-217ENST00000565354 APLNQ9ULZ1 77 aa12.14□□□□□ -0.47
CLN3-217ENST00000565354 H3BVH4 76 aa12.13□□□□□ -0.47
CLN3-217ENST00000565354 C9orf85Q96MD7 179 aa12.13□□□□□ -0.47
CLN3-217ENST00000565354 C18orf15Q96N68 181 aa12.13□□□□□ -0.47
CLN3-217ENST00000565354 DNAH17Q9UFH2 4485 aa12.12□□□□□ -0.47
CLN3-217ENST00000565354 PGPEP1LA6NFU8 196 aa12.12□□□□□ -0.47
CLN3-217ENST00000565354 RNASE3P12724 160 aaKnown RBP12.12□□□□□ -0.47
CLN3-217ENST00000565354 PEA15Q15121 130 aa12.12□□□□□ -0.47
CLN3-217ENST00000565354 ZNF876PQ49A33 203 aa12.12□□□□□ -0.47
CLN3-217ENST00000565354 LINC00336Q6ZUF6 198 aa12.12□□□□□ -0.47
CLN3-217ENST00000565354 RASL10AQ92737 203 aa12.12□□□□□ -0.47
CLN3-217ENST00000565354 TRGV4A0A0C4DH28 118 aa12.11□□□□□ -0.47
CLN3-217ENST00000565354 NDUFS6O75380 124 aaKnown RBP12.11□□□□□ -0.47
CLN3-217ENST00000565354 IGLV2-8P01709 118 aa12.11□□□□□ -0.47
CLN3-217ENST00000565354 RPL19P84098 196 aaKnown RBP12.11□□□□□ -0.47
CLN3-217ENST00000565354 C15orf53Q8NAA6 179 aa12.11□□□□□ -0.47
CLN3-217ENST00000565354 OR4C5Q8NGB2 326 aa12.11□□□□□ -0.47
CLN3-217ENST00000565354 TRBV20OR9-2A0A075B6H5 130 aa12.1□□□□□ -0.47
CLN3-217ENST00000565354 TRAV4A0A0B4J268 109 aa12.1□□□□□ -0.47
CLN3-217ENST00000565354 A0A0J9YY99 117 aa12.1□□□□□ -0.47
CLN3-217ENST00000565354 NUDT3O95989 172 aa12.1□□□□□ -0.47
CLN3-217ENST00000565354 SRP19P09132 144 aaKnown RBP12.1□□□□□ -0.47
CLN3-217ENST00000565354 ARMS2P0C7Q2 107 aa12.1□□□□□ -0.47
CLN3-217ENST00000565354 HOXA5P20719 270 aa12.1□□□□□ -0.47
CLN3-217ENST00000565354 SYT8Q8NBV8 401 aa12.1□□□□□ -0.47
CLN3-217ENST00000565354 SMIM7Q9BQ49 75 aa12.1□□□□□ -0.47
CLN3-217ENST00000565354 IL36BQ9NZH7 164 aa12.1□□□□□ -0.47
CLN3-217ENST00000565354 PHLDA3Q9Y5J5 127 aa12.1□□□□□ -0.47
CLN3-217ENST00000565354 ABCA13Q86UQ4 5058 aa12.1□□□□□ -0.47
CLN3-217ENST00000565354 TRAV26-1A0A087WT03 109 aa12.09□□□□□ -0.47
CLN3-217ENST00000565354 A0A1B0GVY2 172 aa12.09□□□□□ -0.47
CLN3-217ENST00000565354 ZNF727A8MUV8 499 aa12.09□□□□□ -0.47
CLN3-217ENST00000565354 P01737 135 aa12.09□□□□□ -0.47
CLN3-217ENST00000565354 SFTA3P0C7M3 94 aa12.09□□□□□ -0.47
CLN3-217ENST00000565354 DNLZQ5SXM8 178 aa12.09□□□□□ -0.47
CLN3-217ENST00000565354 XKRY2A2RUG3 117 aa12.08□□□□□ -0.48
CLN3-217ENST00000565354 CXCL1P09341 107 aa12.08□□□□□ -0.48
CLN3-217ENST00000565354 RPS20P60866 119 aaKnown RBP12.08□□□□□ -0.48
CLN3-217ENST00000565354 SLAQ13239 276 aa12.08□□□□□ -0.48
CLN3-217ENST00000565354 UBE2DNLQ8IWF7 75 aa12.08□□□□□ -0.48
CLN3-217ENST00000565354 OR2D3Q8NGH3 330 aa12.08□□□□□ -0.48
CLN3-217ENST00000565354 ZNF479Q96JC4 524 aa12.08□□□□□ -0.48
CLN3-217ENST00000565354 OCC1Q8TAD7 63 aa12.07□□□□□ -0.48
CLN3-217ENST00000565354 PTH2Q96A98 100 aa12.07□□□□□ -0.48
CLN3-217ENST00000565354 SMDT1Q9H4I9 107 aa12.07□□□□□ -0.48
CLN3-217ENST00000565354 C19orf71A6NCJ1 209 aa12.06□□□□□ -0.48
CLN3-217ENST00000565354 M0R381 172 aa12.06□□□□□ -0.48
CLN3-217ENST00000565354 PAX4O43316 350 aa12.06□□□□□ -0.48
CLN3-217ENST00000565354 P0DMU3 169 aa12.06□□□□□ -0.48
CLN3-217ENST00000565354 FAM231AP0DMU4 169 aa12.06□□□□□ -0.48
CLN3-217ENST00000565354 FAM231CP0DMU5 169 aa12.06□□□□□ -0.48
CLN3-217ENST00000565354 ZFP82Q8N141 532 aa12.06□□□□□ -0.48
CLN3-217ENST00000565354 PRO0255Q9UI72 69 aa12.06□□□□□ -0.48
CLN3-217ENST00000565354 PKD1P98161 4303 aa12.06□□□□□ -0.48
CLN3-217ENST00000565354 DNAH11Q96DT5 4516 aa12.05□□□□□ -0.48
CLN3-217ENST00000565354 A8MWV9 139 aa12.05□□□□□ -0.48
CLN3-217ENST00000565354 RS1O15537 224 aa12.05□□□□□ -0.48
CLN3-217ENST00000565354 FHL2Q14192 279 aa12.05□□□□□ -0.48
CLN3-217ENST00000565354 TPPP3Q9BW30 176 aa12.05□□□□□ -0.48
CLN3-217ENST00000565354 HHLA3Q9XRX5 114 aa12.05□□□□□ -0.48
CLN3-217ENST00000565354 DYNC1H1Q14204 4646 aaKnown RBP12.04□□□□□ -0.48
CLN3-217ENST00000565354 K7EN84 100 aa12.04□□□□□ -0.48
CLN3-217ENST00000565354 CIDEAO60543 219 aa12.04□□□□□ -0.48
CLN3-217ENST00000565354 FAM74A3Q4VXF1 159 aa12.04□□□□□ -0.48
CLN3-217ENST00000565354 CLLU1Q5K131 121 aa12.04□□□□□ -0.48
CLN3-217ENST00000565354 PIK3CD-AS1Q5SR53 167 aa12.04□□□□□ -0.48
CLN3-217ENST00000565354 CFAP126Q5VTH2 177 aa12.04□□□□□ -0.48
CLN3-217ENST00000565354 POM121L12Q8N7R1 296 aa12.04□□□□□ -0.48
CLN3-217ENST00000565354 NUDT10Q8NFP7 164 aa12.04□□□□□ -0.48
CLN3-217ENST00000565354 NUDT11Q96G61 164 aa12.04□□□□□ -0.48
CLN3-217ENST00000565354 RNASE7Q9H1E1 156 aaKnown RBP12.04□□□□□ -0.48
CLN3-217ENST00000565354 LY96Q9Y6Y9 160 aa12.04□□□□□ -0.48
CLN3-217ENST00000565354 IGHV3-73A0A0B4J1V6 119 aa12.03□□□□□ -0.48
CLN3-217ENST00000565354 H3BNG1 76 aa12.03□□□□□ -0.48
CLN3-217ENST00000565354 GZMBP10144 247 aa12.03□□□□□ -0.48
CLN3-217ENST00000565354 CRYBA4P53673 196 aa12.03□□□□□ -0.48
CLN3-217ENST00000565354 SRSF3P84103 164 aaKnown RBP12.03□□□□□ -0.48
CLN3-217ENST00000565354 IFITM2Q01629 132 aa12.03□□□□□ -0.48
CLN3-217ENST00000565354 SPANXN1Q5VSR9 72 aa12.03□□□□□ -0.48
CLN3-217ENST00000565354 DMRTA1Q5VZB9 504 aa12.03□□□□□ -0.48
CLN3-217ENST00000565354 RPP21Q9H633 154 aaKnown RBP12.03□□□□□ -0.48
CLN3-217ENST00000565354 SCRT2Q9NQ03 307 aa12.03□□□□□ -0.48
CLN3-217ENST00000565354 ICOSQ9Y6W8 199 aa12.03□□□□□ -0.48
CLN3-217ENST00000565354 GATCO43716 136 aaKnown RBP12.02□□□□□ -0.49
CLN3-217ENST00000565354 ERVFC1-1P60608 527 aa12.02□□□□□ -0.49
CLN3-217ENST00000565354 SSTP61278 116 aa12.02□□□□□ -0.49
CLN3-217ENST00000565354 TMEM241Q24JQ0 296 aa12.02□□□□□ -0.49
CLN3-217ENST00000565354 FER1L6-AS1Q8NA97 138 aa12.02□□□□□ -0.49
CLN3-217ENST00000565354 VSIG2Q96IQ7 327 aa12.02□□□□□ -0.49
CLN3-217ENST00000565354 PRSS29PA6NIE9 313 aa12.01□□□□□ -0.49
CLN3-217ENST00000565354 C9JQL5 133 aa12.01□□□□□ -0.49
CLN3-217ENST00000565354 SNAI2O43623 268 aa12.01□□□□□ -0.49
CLN3-217ENST00000565354 OR5AL1P0C617 328 aa12.01□□□□□ -0.49
CLN3-217ENST00000565354 CCL18P55774 89 aa12.01□□□□□ -0.49
CLN3-217ENST00000565354 SOHLH1Q5JUK2 328 aa12.01□□□□□ -0.49
CLN3-217ENST00000565354 FAM74A4Q5TZK3 123 aa12.01□□□□□ -0.49
CLN3-217ENST00000565354 ZNF575Q86XF7 245 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms