RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 IGHV4-4A0A075B6R2 117 aa10.03□□□□□ -0.8
CLN3-210ENST00000563874 SFTA2Q6UW10 78 aa10.03□□□□□ -0.8
CLN3-210ENST00000563874 SIGMAR1Q99720 223 aa10.03□□□□□ -0.8
CLN3-210ENST00000563874 UBTD1Q9HAC8 227 aa10.03□□□□□ -0.8
CLN3-210ENST00000563874 PHLDA3Q9Y5J5 127 aa10.03□□□□□ -0.8
CLN3-210ENST00000563874 NCOR2Q9Y618 2525 aa10.02□□□□□ -0.8
CLN3-210ENST00000563874 C5orf56Q8N8D9 126 aa10.02□□□□□ -0.81
CLN3-210ENST00000563874 MRAP2Q96G30 205 aa10.02□□□□□ -0.81
CLN3-210ENST00000563874 BPESC1Q9GZL8 116 aa10.02□□□□□ -0.81
CLN3-210ENST00000563874 U3KQE9 123 aa10.02□□□□□ -0.81
CLN3-210ENST00000563874 MYMXA0A1B0GTQ4 84 aa10.02□□□□□ -0.81
CLN3-210ENST00000563874 GNRH2O43555 120 aa10.02□□□□□ -0.81
CLN3-210ENST00000563874 HLA-DRB4P13762 266 aa10.02□□□□□ -0.81
CLN3-210ENST00000563874 RNASE4P34096 147 aaKnown RBP10.02□□□□□ -0.81
CLN3-210ENST00000563874 ANXA2RQ3ZCQ2 193 aa10.02□□□□□ -0.81
CLN3-210ENST00000563874 ZFAND2AQ8N6M9 145 aa10.02□□□□□ -0.81
CLN3-210ENST00000563874 MRPL53Q96EL3 112 aaKnown RBP10.02□□□□□ -0.81
CLN3-210ENST00000563874 SPANXB1Q9NS25 103 aaPredicted RBP10.02□□□□□ -0.81
CLN3-210ENST00000563874 TSSC4Q9Y5U2 329 aaPredicted RBP10.02□□□□□ -0.81
CLN3-210ENST00000563874 HLA-DRB4X5D2U9 266 aa10.02□□□□□ -0.81
CLN3-210ENST00000563874 CHD8Q9HCK8 2581 aa10.02□□□□□ -0.81
CLN3-210ENST00000563874 TRBV7-3A0A075B6L6 115 aa10.01□□□□□ -0.81
CLN3-210ENST00000563874 IGHV3-11P01762 117 aa10.01□□□□□ -0.81
CLN3-210ENST00000563874 GATA3P23771 443 aa10.01□□□□□ -0.81
CLN3-210ENST00000563874 EMP1P54849 157 aa10.01□□□□□ -0.81
CLN3-210ENST00000563874 C2orf66Q6UXQ4 117 aa10.01□□□□□ -0.81
CLN3-210ENST00000563874 GPHB5Q86YW7 130 aa10.01□□□□□ -0.81
CLN3-210ENST00000563874 ORMDL2Q53FV1 153 aa10.01□□□□□ -0.81
CLN3-210ENST00000563874 RAXQ9Y2V3 346 aa10.01□□□□□ -0.81
CLN3-210ENST00000563874 SPG11Q96JI7 2443 aa10.01□□□□□ -0.81
CLN3-210ENST00000563874 TRAV41A0A0B4J266 112 aa10.01□□□□□ -0.81
CLN3-210ENST00000563874 NPFFO15130 113 aa10.01□□□□□ -0.81
CLN3-210ENST00000563874 TSPAN13O95857 204 aa10.01□□□□□ -0.81
CLN3-210ENST00000563874 NEXN-AS1Q8NBZ9 246 aa10.01□□□□□ -0.81
CLN3-210ENST00000563874 ITLN2Q8WWU7 325 aaPredicted RBP10.01□□□□□ -0.81
CLN3-210ENST00000563874 TOMM6Q96B49 74 aa10.01□□□□□ -0.81
CLN3-210ENST00000563874 BRD3OSQ6XYD6 125 aa10□□□□□ -0.81
CLN3-210ENST00000563874 C9orf139Q6ZV77 190 aa10□□□□□ -0.81
CLN3-210ENST00000563874 OR10J6PQ8NGY7 276 aa10□□□□□ -0.81
CLN3-210ENST00000563874 BAALCQ8WXS3 180 aa10□□□□□ -0.81
CLN3-210ENST00000563874 PRADC1Q9BSG0 188 aa10□□□□□ -0.81
CLN3-210ENST00000563874 TRAV12-1A0A0B4J245 112 aa10□□□□□ -0.81
CLN3-210ENST00000563874 PRSS29PA6NIE9 313 aa10□□□□□ -0.81
CLN3-210ENST00000563874 F8W1H4 67 aa10□□□□□ -0.81
CLN3-210ENST00000563874 LGALS1P09382 135 aaKnown RBP10□□□□□ -0.81
CLN3-210ENST00000563874 ASIPP42127 132 aa10□□□□□ -0.81
CLN3-210ENST00000563874 INSL3P51460 131 aa10□□□□□ -0.81
CLN3-210ENST00000563874 RPL32P62910 135 aaKnown RBP10□□□□□ -0.81
CLN3-210ENST00000563874 TAL2Q16559 108 aa10□□□□□ -0.81
CLN3-210ENST00000563874 RRN3P1Q2M238 152 aa10□□□□□ -0.81
CLN3-210ENST00000563874 DPH3P1Q9H4G8 78 aa10□□□□□ -0.81
CLN3-210ENST00000563874 SRD5A1P18405 259 aa9.99□□□□□ -0.81
CLN3-210ENST00000563874 KLHL30-AS1Q8NEE0 82 aa9.99□□□□□ -0.81
CLN3-210ENST00000563874 TRAV21A0A0B4J279 112 aa9.99□□□□□ -0.81
CLN3-210ENST00000563874 RNF223E7ERA6 249 aa9.98□□□□□ -0.81
CLN3-210ENST00000563874 LMO4P61968 165 aa9.98□□□□□ -0.81
CLN3-210ENST00000563874 KLK9Q2XQG4 91 aa9.98□□□□□ -0.81
CLN3-210ENST00000563874 CD300EQ496F6 205 aaPredicted RBP9.98□□□□□ -0.81
CLN3-210ENST00000563874 GAGE13Q4V321 117 aa9.98□□□□□ -0.81
CLN3-210ENST00000563874 SCGB1D4Q6XE38 83 aa9.98□□□□□ -0.81
CLN3-210ENST00000563874 PLEKHB2Q96CS7 222 aa9.98□□□□□ -0.81
CLN3-210ENST00000563874 PIMREGQ9BSJ6 248 aa9.98□□□□□ -0.81
CLN3-210ENST00000563874 KLK9Q9UKQ9 250 aa9.98□□□□□ -0.81
CLN3-210ENST00000563874 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.98□□□□□ -0.817e-9■■□□□ 13.5
CLN3-210ENST00000563874 ZNF815PA8K554 130 aa9.98□□□□□ -0.81
CLN3-210ENST00000563874 DUSP14O95147 198 aaKnown RBP9.98□□□□□ -0.81
CLN3-210ENST00000563874 SPAG8Q99932 426 aaPredicted RBP9.98□□□□□ -0.81
CLN3-210ENST00000563874 SLC25A16P16260 332 aa9.98□□□□□ -0.81
CLN3-210ENST00000563874 LY6EQ16553 131 aa9.98□□□□□ -0.81
CLN3-210ENST00000563874 LINC00477Q96M19 166 aa9.98□□□□□ -0.81
CLN3-210ENST00000563874 JPT2Q9H910 190 aa9.98□□□□□ -0.81
CLN3-210ENST00000563874 GAGE12HA6NDE8 117 aa9.97□□□□□ -0.81
CLN3-210ENST00000563874 MORN3Q6PF18 240 aaPredicted RBP9.97□□□□□ -0.81
CLN3-210ENST00000563874 HOXA3O43365 443 aaPredicted RBP9.97□□□□□ -0.81
CLN3-210ENST00000563874 C20orf78Q9BR46 151 aa9.97□□□□□ -0.81
CLN3-210ENST00000563874 MRPL16Q9NX20 251 aaKnown RBP9.97□□□□□ -0.81
CLN3-210ENST00000563874 RNASE3P12724 160 aaKnown RBP9.96□□□□□ -0.81
CLN3-210ENST00000563874 SRSF9Q13242 221 aaKnown RBP eCLIP9.96□□□□□ -0.81
CLN3-210ENST00000563874 ABCA2Q9BZC7 2435 aa9.96□□□□□ -0.81
CLN3-210ENST00000563874 MUC4Q99102 2169 aa9.96□□□□□ -0.81
CLN3-210ENST00000563874 A0A1B0GWB2 263 aa9.96□□□□□ -0.82
CLN3-210ENST00000563874 PRO0461Q9UI25 63 aa9.96□□□□□ -0.82
CLN3-210ENST00000563874 MOB4Q9Y3A3 225 aa9.96□□□□□ -0.82
CLN3-210ENST00000563874 LENEPQ9Y5L5 61 aa9.96□□□□□ -0.82
CLN3-210ENST00000563874 TRAV25A0A0B4J276 109 aa9.95□□□□□ -0.82
CLN3-210ENST00000563874 LINC01549A6NIU2 74 aa9.95□□□□□ -0.82
CLN3-210ENST00000563874 SOCS3O14543 225 aa9.95□□□□□ -0.82
CLN3-210ENST00000563874 EDN2P20800 178 aa9.95□□□□□ -0.82
CLN3-210ENST00000563874 KLRB1Q12918 225 aa9.95□□□□□ -0.82
CLN3-210ENST00000563874 A0A087WWL8 130 aa9.95□□□□□ -0.82
CLN3-210ENST00000563874 OVOL1O14753 267 aa9.95□□□□□ -0.82
CLN3-210ENST00000563874 RPL39P62891 51 aaKnown RBP9.95□□□□□ -0.82
CLN3-210ENST00000563874 LOC107984156A0A0G2JMH3 177 aa9.94□□□□□ -0.82
CLN3-210ENST00000563874 FAM223BA6NKX1 122 aa9.94□□□□□ -0.82
CLN3-210ENST00000563874 APOMO95445 188 aa9.94□□□□□ -0.82
CLN3-210ENST00000563874 ARL17AQ8IVW1 177 aa9.94□□□□□ -0.82
CLN3-210ENST00000563874 FAM223AQ8IWN6 122 aa9.94□□□□□ -0.82
CLN3-210ENST00000563874 TP53TG1Q9Y2A0 90 aa9.94□□□□□ -0.82
CLN3-210ENST00000563874 C11orf86A6NJI1 115 aa9.94□□□□□ -0.82
CLN3-210ENST00000563874 J3QR89 54 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms