RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 CLEC2BQ92478 149 aa10.5□□□□□ -0.73
SHMT2-226ENST00000556825 TIMM21Q9BVV7 248 aa10.5□□□□□ -0.73
SHMT2-226ENST00000556825 DKK4Q9UBT3 224 aa10.5□□□□□ -0.73
SHMT2-226ENST00000556825 DOCK7Q96N67 2140 aa10.5□□□□□ -0.73
SHMT2-226ENST00000556825 IGLV3-12A0A075B6K2 115 aa10.5□□□□□ -0.73
SHMT2-226ENST00000556825 M0R3E3 92 aa10.5□□□□□ -0.73
SHMT2-226ENST00000556825 LGALS3P17931 250 aaKnown RBP10.5□□□□□ -0.73
SHMT2-226ENST00000556825 LY6G6EA0A0G2JKS1 128 aa10.49□□□□□ -0.73
SHMT2-226ENST00000556825 A0A1W2PRX2 142 aa10.49□□□□□ -0.73
SHMT2-226ENST00000556825 CCL3P10147 92 aa10.49□□□□□ -0.73
SHMT2-226ENST00000556825 ZNF80P51504 273 aaPredicted RBP10.49□□□□□ -0.73
SHMT2-226ENST00000556825 U3KQA8 63 aa10.49□□□□□ -0.73
SHMT2-226ENST00000556825 TRAV26-2A0A0B4J265 109 aa10.49□□□□□ -0.73
SHMT2-226ENST00000556825 IQCF6A8MYZ5 107 aa10.49□□□□□ -0.73
SHMT2-226ENST00000556825 NBL1P41271 181 aa10.49□□□□□ -0.73
SHMT2-226ENST00000556825 FHL2Q14192 279 aa10.49□□□□□ -0.73
SHMT2-226ENST00000556825 C2orf66Q6UXQ4 117 aa10.49□□□□□ -0.73
SHMT2-226ENST00000556825 WFDC11Q8NEX6 87 aa10.49□□□□□ -0.73
SHMT2-226ENST00000556825 CDSNQ15517 529 aa10.48□□□□□ -0.73
SHMT2-226ENST00000556825 TRAV8-3A0A0A6YYJ7 113 aa10.48□□□□□ -0.73
SHMT2-226ENST00000556825 IGHV5-10-1A0A0J9YXX1 117 aa10.48□□□□□ -0.73
SHMT2-226ENST00000556825 A0A0U1RQV1 116 aa10.48□□□□□ -0.73
SHMT2-226ENST00000556825 TRGV3P03979 118 aa10.48□□□□□ -0.73
SHMT2-226ENST00000556825 DAND5Q8N907 189 aa10.48□□□□□ -0.73
SHMT2-226ENST00000556825 C16orf92Q96LL3 132 aa10.48□□□□□ -0.73
SHMT2-226ENST00000556825 TTC28Q96AY4 2481 aa10.47□□□□□ -0.73
SHMT2-226ENST00000556825 PVRIGQ6DKI7 326 aa10.47□□□□□ -0.73
SHMT2-226ENST00000556825 C9orf139Q6ZV77 190 aa10.47□□□□□ -0.73
SHMT2-226ENST00000556825 TNCP24821 2201 aa10.47□□□□□ -0.73
SHMT2-226ENST00000556825 TECTAO75443 2155 aa10.47□□□□□ -0.73
SHMT2-226ENST00000556825 CGB3P0DN86 165 aa10.46□□□□□ -0.73
SHMT2-226ENST00000556825 CGB7P0DN87 165 aa10.46□□□□□ -0.73
SHMT2-226ENST00000556825 DLX1P56177 255 aa10.46□□□□□ -0.73
SHMT2-226ENST00000556825 WDFY3Q8IZQ1 3526 aa10.46□□□□□ -0.74
SHMT2-226ENST00000556825 CNTRLQ7Z7A1 2325 aa10.46□□□□□ -0.74
SHMT2-226ENST00000556825 SCRG1O75711 98 aa10.46□□□□□ -0.74
SHMT2-226ENST00000556825 TMEM167AQ8TBQ9 72 aa10.46□□□□□ -0.74
SHMT2-226ENST00000556825 DSCAML1Q8TD84 2053 aa10.46□□□□□ -0.74
SHMT2-226ENST00000556825 IGKV3D-15A0A087WSY6 115 aa10.45□□□□□ -0.74
SHMT2-226ENST00000556825 SMIM26A0A096LP01 95 aa10.45□□□□□ -0.74
SHMT2-226ENST00000556825 C17orf58Q2M2W7 97 aa10.45□□□□□ -0.74
SHMT2-226ENST00000556825 C10orf55Q5SWW7 151 aa10.45□□□□□ -0.74
SHMT2-226ENST00000556825 ZNF491Q8N8L2 437 aa10.45□□□□□ -0.74
SHMT2-226ENST00000556825 IL17DQ8TAD2 202 aa10.45□□□□□ -0.74
SHMT2-226ENST00000556825 ZDBF2Q9HCK1 2354 aa10.45□□□□□ -0.74
SHMT2-226ENST00000556825 PATE3B3GLJ2 98 aa10.45□□□□□ -0.74
SHMT2-226ENST00000556825 CXXC4Q9H2H0 198 aa10.45□□□□□ -0.74
SHMT2-226ENST00000556825 CFAP54Q96N23 3096 aa10.44□□□□□ -0.74
SHMT2-226ENST00000556825 I3L3M4 83 aa10.44□□□□□ -0.74
SHMT2-226ENST00000556825 BUB3O43684 328 aa10.44□□□□□ -0.74
SHMT2-226ENST00000556825 PRSS2P07478 247 aa10.44□□□□□ -0.74
SHMT2-226ENST00000556825 VMA21Q3ZAQ7 101 aa10.44□□□□□ -0.74
SHMT2-226ENST00000556825 FAM201AQ5SY85 155 aa10.44□□□□□ -0.74
SHMT2-226ENST00000556825 A0A0U1RRA0 63 aa10.43□□□□□ -0.74
SHMT2-226ENST00000556825 USP17L23D6RBM5 183 aa10.43□□□□□ -0.74
SHMT2-226ENST00000556825 H3BRN7 92 aa10.43□□□□□ -0.74
SHMT2-226ENST00000556825 WT1P19544 449 aaPredicted RBP10.43□□□□□ -0.74
SHMT2-226ENST00000556825 TMEM243Q9BU79 118 aa10.43□□□□□ -0.74
SHMT2-226ENST00000556825 IGKV2-40A0A087WW87 121 aaPredicted RBP10.43□□□□□ -0.74
SHMT2-226ENST00000556825 LEPROTO15243 131 aa10.43□□□□□ -0.74
SHMT2-226ENST00000556825 IGKV2D-40P01614 121 aaPredicted RBP10.43□□□□□ -0.74
SHMT2-226ENST00000556825 PDE6HQ13956 83 aa10.43□□□□□ -0.74
SHMT2-226ENST00000556825 BRK1Q8WUW1 75 aa10.43□□□□□ -0.74
SHMT2-226ENST00000556825 WDR87Q6ZQQ6 2873 aa10.43□□□□□ -0.74
SHMT2-226ENST00000556825 A0A0J9YX75 114 aa10.42□□□□□ -0.74
SHMT2-226ENST00000556825 SUMO2P61956 95 aaKnown RBP10.42□□□□□ -0.74
SHMT2-226ENST00000556825 FP248Q71RG6 208 aaPredicted RBP10.42□□□□□ -0.74
SHMT2-226ENST00000556825 IGHV3-21A0A0B4J1V1 117 aa10.42□□□□□ -0.74
SHMT2-226ENST00000556825 HCP5Q6MZN7 132 aa10.42□□□□□ -0.74
SHMT2-226ENST00000556825 FAM19A1Q7Z5A9 133 aa10.42□□□□□ -0.74
SHMT2-226ENST00000556825 SDHAF1A6NFY7 115 aa10.41□□□□□ -0.74
SHMT2-226ENST00000556825 IGKV1D-17A0A075B6S4 117 aa10.41□□□□□ -0.74
SHMT2-226ENST00000556825 TSHBP01222 138 aa10.41□□□□□ -0.74
SHMT2-226ENST00000556825 TIRAPP58753 221 aa10.41□□□□□ -0.74
SHMT2-226ENST00000556825 Q6JHZ5 121 aa10.41□□□□□ -0.74
SHMT2-226ENST00000556825 FAM223AQ8IWN6 122 aa10.41□□□□□ -0.74
SHMT2-226ENST00000556825 LINC00482Q8N8I6 264 aa10.41□□□□□ -0.74
SHMT2-226ENST00000556825 SLC50A1Q9BRV3 221 aa10.41□□□□□ -0.74
SHMT2-226ENST00000556825 TRGV5A0A0B4J1U4 118 aa10.4□□□□□ -0.74
SHMT2-226ENST00000556825 LPAL2Q16609 132 aa10.4□□□□□ -0.74
SHMT2-226ENST00000556825 TMEM105Q8N8V8 129 aa10.4□□□□□ -0.74
SHMT2-226ENST00000556825 Q8TAT8 98 aa10.4□□□□□ -0.74
SHMT2-226ENST00000556825 DMDP11532 3685 aa10.4□□□□□ -0.75
SHMT2-226ENST00000556825 IGHV3OR16-10A0A075B7F0 116 aa10.39□□□□□ -0.75
SHMT2-226ENST00000556825 IGHV1-69DA0A0B4J2H0 117 aa10.39□□□□□ -0.75
SHMT2-226ENST00000556825 FAM223BA6NKX1 122 aa10.39□□□□□ -0.75
SHMT2-226ENST00000556825 NTN3O00634 580 aaPredicted RBP10.39□□□□□ -0.75
SHMT2-226ENST00000556825 DAZ2Q13117 558 aaKnown RBP10.39□□□□□ -0.75
SHMT2-226ENST00000556825 DAZ4Q86SG3 579 aaKnown RBP10.39□□□□□ -0.75
SHMT2-226ENST00000556825 DAZ1Q9NQZ3 744 aaKnown RBP10.39□□□□□ -0.75
SHMT2-226ENST00000556825 DAZ3Q9NR90 486 aaKnown RBP10.39□□□□□ -0.75
SHMT2-226ENST00000556825 PCNX2A6NKB5 2137 aa10.39□□□□□ -0.75
SHMT2-226ENST00000556825 IGHV4-4A0A075B6R2 117 aa10.39□□□□□ -0.75
SHMT2-226ENST00000556825 INAFM2P0DMQ5 153 aa10.39□□□□□ -0.75
SHMT2-226ENST00000556825 NCOR1O75376 2440 aa10.39□□□□□ -0.75
SHMT2-226ENST00000556825 KNCNA6PVL3 124 aa10.38□□□□□ -0.75
SHMT2-226ENST00000556825 SLC25A15Q9Y619 301 aa10.38□□□□□ -0.75
SHMT2-226ENST00000556825 VPS13AQ96RL7 3174 aa10.38□□□□□ -0.75
SHMT2-226ENST00000556825 MRPS36P82909 103 aaKnown RBP10.38□□□□□ -0.75
SHMT2-226ENST00000556825 GFRALQ6UXV0 394 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 1876.3 ms