RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 SMIM27A0A1W2PRY6 76 aa6.81□□□□□ -1.32
VPS13D-212ENST00000543766 LRCOL1A6NCL2 159 aa6.81□□□□□ -1.32
VPS13D-212ENST00000543766 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.81□□□□□ -1.32
VPS13D-212ENST00000543766 IZUMO1RA6ND01 250 aa6.81□□□□□ -1.32
VPS13D-212ENST00000543766 CCKP06307 115 aa6.81□□□□□ -1.32
VPS13D-212ENST00000543766 ZNF747Q9BV97 191 aa6.81□□□□□ -1.32
VPS13D-212ENST00000543766 DKK2Q9UBU2 259 aa6.81□□□□□ -1.32
VPS13D-212ENST00000543766 DMXL1Q9Y485 3027 aa6.8□□□□□ -1.32
VPS13D-212ENST00000543766 ASCC3Q8N3C0 2202 aaKnown RBP6.8□□□□□ -1.32
VPS13D-212ENST00000543766 TRAV12-3A0A0B4J271 114 aa6.8□□□□□ -1.32
VPS13D-212ENST00000543766 IGKV1-5P01602 117 aa6.8□□□□□ -1.32
VPS13D-212ENST00000543766 NNATQ16517 81 aa6.8□□□□□ -1.32
VPS13D-212ENST00000543766 C1orf158Q8N1D5 194 aa6.8□□□□□ -1.32
VPS13D-212ENST00000543766 TMEM30CPA0ZSE6 113 aa6.8□□□□□ -1.32
VPS13D-212ENST00000543766 NDUFS7O75251 213 aa6.8□□□□□ -1.32
VPS13D-212ENST00000543766 CKS2P33552 79 aa6.8□□□□□ -1.32
VPS13D-212ENST00000543766 CFHR3Q02985 330 aa6.8□□□□□ -1.32
VPS13D-212ENST00000543766 ASXL3Q9C0F0 2248 aa6.8□□□□□ -1.32
VPS13D-212ENST00000543766 BPESC1Q9GZL8 116 aa6.8□□□□□ -1.32
VPS13D-212ENST00000543766 IGKV2D-26A0A0A0MRZ7 120 aa6.8□□□□□ -1.32
VPS13D-212ENST00000543766 H0YGG7 62 aa6.8□□□□□ -1.32
VPS13D-212ENST00000543766 CHD8Q9HCK8 2581 aa6.79□□□□□ -1.32
VPS13D-212ENST00000543766 IGKV1-12A0A0C4DH73 117 aa6.79□□□□□ -1.32
VPS13D-212ENST00000543766 IGKV1D-12P01611 117 aa6.79□□□□□ -1.32
VPS13D-212ENST00000543766 IGLV2-14P01704 120 aa6.79□□□□□ -1.32
VPS13D-212ENST00000543766 EBI3Q14213 229 aa6.79□□□□□ -1.32
VPS13D-212ENST00000543766 ATXN8Q156A1 80 aa6.79□□□□□ -1.32
VPS13D-212ENST00000543766 IGKV1-6A0A0C4DH72 117 aa6.79□□□□□ -1.32
VPS13D-212ENST00000543766 PRB1P04280 392 aa6.79□□□□□ -1.32
VPS13D-212ENST00000543766 P0C879 139 aa6.79□□□□□ -1.32
VPS13D-212ENST00000543766 TNRC6BQ9UPQ9 1833 aaKnown RBP6.79□□□□□ -1.32
VPS13D-212ENST00000543766 CACNA1EQ15878 2313 aa6.79□□□□□ -1.32
VPS13D-212ENST00000543766 A0A087WVE0 104 aa6.79□□□□□ -1.32
VPS13D-212ENST00000543766 PIGBOS1A0A0B4J2F0 54 aa6.79□□□□□ -1.32
VPS13D-212ENST00000543766 LST1O00453 97 aa6.79□□□□□ -1.32
VPS13D-212ENST00000543766 ZNF80P51504 273 aaPredicted RBP6.79□□□□□ -1.32
VPS13D-212ENST00000543766 FGF12P61328 243 aa6.79□□□□□ -1.32
VPS13D-212ENST00000543766 MRPS21P82921 87 aaKnown RBP6.79□□□□□ -1.32
VPS13D-212ENST00000543766 MKXQ8IYA7 352 aa6.79□□□□□ -1.32
VPS13D-212ENST00000543766 FAM216BQ8N7L0 139 aa6.79□□□□□ -1.32
VPS13D-212ENST00000543766 SNURFQ9Y675 71 aa6.79□□□□□ -1.32
VPS13D-212ENST00000543766 TECTAO75443 2155 aa6.78□□□□□ -1.32
VPS13D-212ENST00000543766 ARHGAP32A7KAX9 2087 aa6.78□□□□□ -1.32
VPS13D-212ENST00000543766 TRBV27A0A0K0K1C4 114 aa6.78□□□□□ -1.32
VPS13D-212ENST00000543766 IGLV3-19P01714 112 aa6.78□□□□□ -1.32
VPS13D-212ENST00000543766 TFF3Q07654 80 aa6.78□□□□□ -1.32
VPS13D-212ENST00000543766 CLEC2BQ92478 149 aa6.78□□□□□ -1.32
VPS13D-212ENST00000543766 IFI27L1Q96BM0 104 aa6.78□□□□□ -1.32
VPS13D-212ENST00000543766 CCL28Q9NRJ3 127 aa6.78□□□□□ -1.32
VPS13D-212ENST00000543766 OSTCQ9NRP0 149 aa6.78□□□□□ -1.32
VPS13D-212ENST00000543766 EDDM3BP56851 147 aa6.78□□□□□ -1.32
VPS13D-212ENST00000543766 GFRALQ6UXV0 394 aa6.78□□□□□ -1.32
VPS13D-212ENST00000543766 MP68P56378 58 aa6.78□□□□□ -1.32
VPS13D-212ENST00000543766 PIGYQ3MUY2 71 aa6.78□□□□□ -1.32
VPS13D-212ENST00000543766 NKAPP1Q8N9T2 125 aa6.78□□□□□ -1.32
VPS13D-212ENST00000543766 CCL17Q92583 94 aa6.78□□□□□ -1.32
VPS13D-212ENST00000543766 MAP1BP46821 2468 aaKnown RBP6.77□□□□□ -1.32
VPS13D-212ENST00000543766 C2CD4DB7Z1M9 353 aa6.77□□□□□ -1.33
VPS13D-212ENST00000543766 LPAL2Q16609 132 aa6.77□□□□□ -1.33
VPS13D-212ENST00000543766 SBSPONQ8IVN8 264 aa6.77□□□□□ -1.33
VPS13D-212ENST00000543766 DCHS1Q96JQ0 3298 aa6.77□□□□□ -1.33
VPS13D-212ENST00000543766 NANOS2P60321 138 aaKnown RBP6.77□□□□□ -1.33
VPS13D-212ENST00000543766 TM2D3Q9BRN9 247 aa6.77□□□□□ -1.33
VPS13D-212ENST00000543766 ICE1Q9Y2F5 2266 aa6.77□□□□□ -1.33
VPS13D-212ENST00000543766 IGLV2-8P01709 118 aa6.77□□□□□ -1.33
VPS13D-212ENST00000543766 VSIG2Q96IQ7 327 aa6.77□□□□□ -1.33
VPS13D-212ENST00000543766 TMEM30BQ3MIR4 351 aa6.76□□□□□ -1.33
VPS13D-212ENST00000543766 CELA1Q9UNI1 258 aa6.76□□□□□ -1.33
VPS13D-212ENST00000543766 CEP192Q8TEP8 1941 aa6.76□□□□□ -1.33
VPS13D-212ENST00000543766 HIGD1CA8MV81 97 aa6.76□□□□□ -1.33
VPS13D-212ENST00000543766 COX7A2P2O60397 106 aa6.76□□□□□ -1.33
VPS13D-212ENST00000543766 GP1BBP13224 206 aa6.76□□□□□ -1.33
VPS13D-212ENST00000543766 CEP295Q9C0D2 2601 aa6.76□□□□□ -1.33
VPS13D-212ENST00000543766 F8WEM9 126 aa6.76□□□□□ -1.33
VPS13D-212ENST00000543766 CA6P23280 308 aa6.76□□□□□ -1.33
VPS13D-212ENST00000543766 BLCAPP62952 87 aa6.76□□□□□ -1.33
VPS13D-212ENST00000543766 HOXA4Q00056 320 aaPredicted RBP6.76□□□□□ -1.33
VPS13D-212ENST00000543766 ZNF876PQ49A33 203 aa6.76□□□□□ -1.33
VPS13D-212ENST00000543766 RFPL3SP0C7P2 107 aa6.75□□□□□ -1.33
VPS13D-212ENST00000543766 FDCSPQ8NFU4 85 aa6.75□□□□□ -1.33
VPS13D-212ENST00000543766 FAM223BA6NKX1 122 aa6.75□□□□□ -1.33
VPS13D-212ENST00000543766 XCL1P47992 114 aa6.75□□□□□ -1.33
VPS13D-212ENST00000543766 PVRIGQ6DKI7 326 aa6.75□□□□□ -1.33
VPS13D-212ENST00000543766 RNASE6Q93091 150 aaKnown RBP6.75□□□□□ -1.33
VPS13D-212ENST00000543766 RITA1Q96K30 269 aa6.75□□□□□ -1.33
VPS13D-212ENST00000543766 ZFAND3Q9H8U3 227 aa6.75□□□□□ -1.33
VPS13D-212ENST00000543766 XCL2Q9UBD3 114 aa6.75□□□□□ -1.33
VPS13D-212ENST00000543766 PCSK5Q92824 1860 aa6.75□□□□□ -1.33
VPS13D-212ENST00000543766 MUC4Q99102 2169 aa6.75□□□□□ -1.33
VPS13D-212ENST00000543766 TRAV23DV6A0A075B6W5 121 aa6.75□□□□□ -1.33
VPS13D-212ENST00000543766 NDUFA3O95167 84 aa6.75□□□□□ -1.33
VPS13D-212ENST00000543766 DYNLRB1Q9NP97 96 aa6.75□□□□□ -1.33
VPS13D-212ENST00000543766 ZNF407Q9C0G0 2248 aa6.75□□□□□ -1.33
VPS13D-212ENST00000543766 TRBV6-6A0A0A6YYG2 114 aa6.74□□□□□ -1.33
VPS13D-212ENST00000543766 ITLN1Q8WWA0 313 aa6.74□□□□□ -1.33
VPS13D-212ENST00000543766 ITLN2Q8WWU7 325 aaPredicted RBP6.74□□□□□ -1.33
VPS13D-212ENST00000543766 RTTNQ86VV8 2226 aa6.74□□□□□ -1.33
VPS13D-212ENST00000543766 WNT9BO14905 357 aa6.74□□□□□ -1.33
VPS13D-212ENST00000543766 IGKV3-11P04433 115 aa6.74□□□□□ -1.33
VPS13D-212ENST00000543766 KRTAP27-1Q3LI81 207 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms