RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 TAX1BP3O14907 124 aa12.72□□□□□ -0.37
USP28-208ENST00000540438 HOXA3O43365 443 aaPredicted RBP12.72□□□□□ -0.37
USP28-208ENST00000540438 COX8AP10176 69 aa12.72□□□□□ -0.37
USP28-208ENST00000540438 S100A7P31151 101 aa12.72□□□□□ -0.37
USP28-208ENST00000540438 COX8CQ7Z4L0 72 aa12.72□□□□□ -0.37
USP28-208ENST00000540438 MRPL35Q9NZE8 188 aaKnown RBP12.72□□□□□ -0.37
USP28-208ENST00000540438 TMEM8BA6NDV4 472 aa12.72□□□□□ -0.37
USP28-208ENST00000540438 CD7P09564 240 aa12.72□□□□□ -0.37
USP28-208ENST00000540438 NRACQ8N912 160 aa12.72□□□□□ -0.37
USP28-208ENST00000540438 SOCS3O14543 225 aa12.71□□□□□ -0.37
USP28-208ENST00000540438 IGHV3-73A0A0B4J1V6 119 aa12.71□□□□□ -0.38
USP28-208ENST00000540438 RBAKDNA6NC62 111 aa12.71□□□□□ -0.38
USP28-208ENST00000540438 SMPXQ9UHP9 88 aa12.71□□□□□ -0.38
USP28-208ENST00000540438 IGHV4OR15-8A0A075B7B6 117 aa12.7□□□□□ -0.38
USP28-208ENST00000540438 A0A087WW49 117 aa12.7□□□□□ -0.38
USP28-208ENST00000540438 COX6B1P14854 86 aa12.7□□□□□ -0.38
USP28-208ENST00000540438 FCER1GP30273 86 aa12.7□□□□□ -0.38
USP28-208ENST00000540438 ASIPP42127 132 aa12.7□□□□□ -0.38
USP28-208ENST00000540438 MDFICQ9P1T7 246 aa12.7□□□□□ -0.38
USP28-208ENST00000540438 GCN1Q92616 2671 aaKnown RBP12.69□□□□□ -0.38
USP28-208ENST00000540438 IGLV1-40P01703 118 aa12.69□□□□□ -0.38
USP28-208ENST00000540438 FGF6P10767 208 aa12.69□□□□□ -0.38
USP28-208ENST00000540438 C21orf62-AS1Q17RA5 79 aa12.69□□□□□ -0.38
USP28-208ENST00000540438 MS4A6AQ9H2W1 248 aa12.69□□□□□ -0.38
USP28-208ENST00000540438 TRAV21A0A0B4J279 112 aa12.69□□□□□ -0.38
USP28-208ENST00000540438 K7ERJ3 54 aa12.69□□□□□ -0.38
USP28-208ENST00000540438 SLURP1P55000 103 aa12.69□□□□□ -0.38
USP28-208ENST00000540438 ODF1Q14990 250 aa12.69□□□□□ -0.38
USP28-208ENST00000540438 NDUFS8O00217 210 aa12.68□□□□□ -0.38
USP28-208ENST00000540438 RNASE3P12724 160 aaKnown RBP12.68□□□□□ -0.38
USP28-208ENST00000540438 RASL10AQ92737 203 aa12.68□□□□□ -0.38
USP28-208ENST00000540438 USMG5Q96IX5 58 aa12.68□□□□□ -0.38
USP28-208ENST00000540438 CNFNQ9BYD5 112 aa12.68□□□□□ -0.38
USP28-208ENST00000540438 A0A1W2PRX2 142 aa12.68□□□□□ -0.38
USP28-208ENST00000540438 GCSHP23434 173 aa12.68□□□□□ -0.38
USP28-208ENST00000540438 OR4C5Q8NGB2 326 aa12.68□□□□□ -0.38
USP28-208ENST00000540438 RNF151Q2KHN1 245 aa12.67□□□□□ -0.38
USP28-208ENST00000540438 TMEM97Q5BJF2 176 aa12.67□□□□□ -0.38
USP28-208ENST00000540438 LINC01356Q8N9X3 169 aa12.67□□□□□ -0.38
USP28-208ENST00000540438 RNASE8Q8TDE3 154 aaKnown RBP12.67□□□□□ -0.38
USP28-208ENST00000540438 DPF1Q92782 380 aa12.67□□□□□ -0.38
USP28-208ENST00000540438 A0A0G2JLM5 398 aa12.67□□□□□ -0.38
USP28-208ENST00000540438 KNCNA6PVL3 124 aa12.67□□□□□ -0.38
USP28-208ENST00000540438 LGALS9BQ3B8N2 356 aa12.67□□□□□ -0.38
USP28-208ENST00000540438 LGALS9CQ6DKI2 356 aa12.67□□□□□ -0.38
USP28-208ENST00000540438 IGLV2-18A0A075B6J9 118 aa12.67□□□□□ -0.38
USP28-208ENST00000540438 LAGE3Q14657 143 aa12.67□□□□□ -0.38
USP28-208ENST00000540438 Q8N8P6 123 aa12.67□□□□□ -0.38
USP28-208ENST00000540438 ZNF256Q9Y2P7 627 aaPredicted RBP12.67□□□□□ -0.38
USP28-208ENST00000540438 FAM159AQ6UWV7 190 aa12.66□□□□□ -0.38
USP28-208ENST00000540438 NXT2Q9NPJ8 142 aaKnown RBP12.66□□□□□ -0.38
USP28-208ENST00000540438 PSMB8P28062 276 aa12.66□□□□□ -0.38
USP28-208ENST00000540438 MAPKAPK5-AS1Q8N8E1 139 aa12.66□□□□□ -0.38
USP28-208ENST00000540438 H3BUT2 72 aa12.65□□□□□ -0.38
USP28-208ENST00000540438 PPBPP02775 128 aa12.65□□□□□ -0.38
USP28-208ENST00000540438 RPL39P62891 51 aaKnown RBP12.65□□□□□ -0.38
USP28-208ENST00000540438 MYOZ3Q8TDC0 251 aa12.65□□□□□ -0.38
USP28-208ENST00000540438 OVOL1O14753 267 aa12.65□□□□□ -0.38
USP28-208ENST00000540438 DCANP1Q8TF63 244 aa12.65□□□□□ -0.38
USP28-208ENST00000540438 Q96MF0 132 aa12.65□□□□□ -0.38
USP28-208ENST00000540438 HHLA3Q9XRX5 114 aa12.65□□□□□ -0.38
USP28-208ENST00000540438 IGKCP01834 107 aa12.64□□□□□ -0.39
USP28-208ENST00000540438 HOXD3P31249 432 aaPredicted RBP12.64□□□□□ -0.39
USP28-208ENST00000540438 UBE2V1Q13404 147 aa12.64□□□□□ -0.39
USP28-208ENST00000540438 C12orf54Q6X4T0 127 aa12.64□□□□□ -0.39
USP28-208ENST00000540438 CSTL1Q9H114 145 aa12.64□□□□□ -0.39
USP28-208ENST00000540438 UNC79Q9P2D8 2635 aa12.64□□□□□ -0.39
USP28-208ENST00000540438 Q5PR19 223 aa12.64□□□□□ -0.39
USP28-208ENST00000540438 ZNF843Q8N446 348 aa12.64□□□□□ -0.39
USP28-208ENST00000540438 OPRPNQ99935 248 aaPredicted RBP12.64□□□□□ -0.39
USP28-208ENST00000540438 SUMO2P61956 95 aaKnown RBP12.63□□□□□ -0.39
USP28-208ENST00000540438 SCGB3A1Q96QR1 104 aa12.63□□□□□ -0.39
USP28-208ENST00000540438 CFHR3Q02985 330 aa12.63□□□□□ -0.39
USP28-208ENST00000540438 SFTA2Q6UW10 78 aa12.63□□□□□ -0.39
USP28-208ENST00000540438 MRPL52Q86TS9 123 aaKnown RBP12.63□□□□□ -0.39
USP28-208ENST00000540438 DEFB125Q8N687 156 aa12.63□□□□□ -0.39
USP28-208ENST00000540438 VWFP04275 2813 aa12.62□□□□□ -0.39
USP28-208ENST00000540438 ORAOV1Q8WV07 137 aa12.62□□□□□ -0.39
USP28-208ENST00000540438 SMIM2Q9BVW6 85 aa12.62□□□□□ -0.39
USP28-208ENST00000540438 ARL6IP6Q8N6S5 226 aa12.62□□□□□ -0.39
USP28-208ENST00000540438 CR1P17927 2039 aa12.62□□□□□ -0.39
USP28-208ENST00000540438 DUSP14O95147 198 aaKnown RBP12.62□□□□□ -0.39
USP28-208ENST00000540438 CRIP2P52943 208 aaPredicted RBP12.62□□□□□ -0.39
USP28-208ENST00000540438 FXYD2P54710 66 aa12.62□□□□□ -0.39
USP28-208ENST00000540438 KLK9Q2XQG4 91 aa12.62□□□□□ -0.39
USP28-208ENST00000540438 BOD1L2Q8IYS8 172 aa12.62□□□□□ -0.39
USP28-208ENST00000540438 Q9UF83 564 aa12.62□□□□□ -0.39
USP28-208ENST00000540438 PROK1P58294 105 aa12.61□□□□□ -0.39
USP28-208ENST00000540438 GAGE1Q13065 139 aa12.61□□□□□ -0.39
USP28-208ENST00000540438 JMJD8Q96S16 334 aa12.61□□□□□ -0.39
USP28-208ENST00000540438 P0DMU3 169 aa12.61□□□□□ -0.39
USP28-208ENST00000540438 FAM231AP0DMU4 169 aa12.61□□□□□ -0.39
USP28-208ENST00000540438 FAM231CP0DMU5 169 aa12.61□□□□□ -0.39
USP28-208ENST00000540438 Q8N1Y9 231 aa12.61□□□□□ -0.39
USP28-208ENST00000540438 DPH3P1Q9H4G8 78 aa12.61□□□□□ -0.39
USP28-208ENST00000540438 IGHV4-31P0DP07 118 aa12.6□□□□□ -0.39
USP28-208ENST00000540438 APRG1Q8IVJ8 170 aa12.6□□□□□ -0.39
USP28-208ENST00000540438 MRPL53Q96EL3 112 aaKnown RBP12.6□□□□□ -0.39
USP28-208ENST00000540438 ZNF56Q15929 161 aa12.6□□□□□ -0.39
USP28-208ENST00000540438 TCTEX1D4Q5JR98 221 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms