RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 F8VRH5 84 aa15.95■□□□□ 0.14
VPS28-205ENST00000526204 RPL39LQ96EH5 51 aaKnown RBP15.95■□□□□ 0.14
VPS28-205ENST00000526204 SPTAN1Q13813 2472 aaKnown RBP15.94■□□□□ 0.14
VPS28-205ENST00000526204 IGHV4-59P01825 116 aa15.94■□□□□ 0.14
VPS28-205ENST00000526204 DEFB112Q30KQ8 113 aa15.94■□□□□ 0.14
VPS28-205ENST00000526204 J3QLI3 93 aa15.94■□□□□ 0.14
VPS28-205ENST00000526204 TMEM95Q3KNT9 176 aa15.94■□□□□ 0.14
VPS28-205ENST00000526204 TTTY13Q9BZ97 58 aa15.94■□□□□ 0.14
VPS28-205ENST00000526204 H3BUT2 72 aa15.93■□□□□ 0.14
VPS28-205ENST00000526204 RBX1P62877 108 aa15.93■□□□□ 0.14
VPS28-205ENST00000526204 FLNCQ14315 2725 aa15.93■□□□□ 0.14
VPS28-205ENST00000526204 GAGE12BA1L429 117 aa15.92■□□□□ 0.14
VPS28-205ENST00000526204 ODF3Q96PU9 254 aa15.92■□□□□ 0.14
VPS28-205ENST00000526204 CST9LQ9H4G1 147 aa15.92■□□□□ 0.14
VPS28-205ENST00000526204 RNF223E7ERA6 249 aa15.92■□□□□ 0.14
VPS28-205ENST00000526204 SMIM13P0DJ93 91 aa15.92■□□□□ 0.14
VPS28-205ENST00000526204 GCSHP23434 173 aa15.92■□□□□ 0.14
VPS28-205ENST00000526204 RPL32P62910 135 aaKnown RBP15.92■□□□□ 0.14
VPS28-205ENST00000526204 IGHV4OR15-8A0A075B7B6 117 aa15.91■□□□□ 0.14
VPS28-205ENST00000526204 A0A087WW49 117 aa15.91■□□□□ 0.14
VPS28-205ENST00000526204 EDN2P20800 178 aa15.91■□□□□ 0.14
VPS28-205ENST00000526204 UFSP1Q6NVU6 142 aa15.91■□□□□ 0.14
VPS28-205ENST00000526204 C2orf66Q6UXQ4 117 aa15.91■□□□□ 0.14
VPS28-205ENST00000526204 NEXN-AS1Q8NBZ9 246 aa15.91■□□□□ 0.14
VPS28-205ENST00000526204 CHTOPQ9Y3Y2 248 aaKnown RBP15.91■□□□□ 0.14
VPS28-205ENST00000526204 KIF25-AS1Q9Y6Z4 181 aa15.91■□□□□ 0.14
VPS28-205ENST00000526204 ZFYVE26Q68DK2 2539 aa15.91■□□□□ 0.14
VPS28-205ENST00000526204 SELENOKQ9Y6D0 94 aa15.91■□□□□ 0.14
VPS28-205ENST00000526204 LINC01549A6NIU2 74 aa15.9■□□□□ 0.14
VPS28-205ENST00000526204 CDKN1BP46527 198 aa15.9■□□□□ 0.14
VPS28-205ENST00000526204 SNRPD3P62318 126 aaKnown RBP15.9■□□□□ 0.14
VPS28-205ENST00000526204 TM2D2Q9BX73 214 aa15.9■□□□□ 0.14
VPS28-205ENST00000526204 CSTL1Q9H114 145 aa15.9■□□□□ 0.14
VPS28-205ENST00000526204 TAL2Q16559 108 aa15.89■□□□□ 0.13
VPS28-205ENST00000526204 RAB37Q96AX2 223 aa15.89■□□□□ 0.13
VPS28-205ENST00000526204 JMJD8Q96S16 334 aa15.89■□□□□ 0.13
VPS28-205ENST00000526204 ZFHX3Q15911 3703 aa15.89■□□□□ 0.13
VPS28-205ENST00000526204 K7EP34 96 aa15.89■□□□□ 0.13
VPS28-205ENST00000526204 LINC00315P59091 139 aa15.89■□□□□ 0.13
VPS28-205ENST00000526204 CELSR1Q9NYQ6 3014 aa15.88■□□□□ 0.13
VPS28-205ENST00000526204 FXYD2P54710 66 aa15.88■□□□□ 0.13
VPS28-205ENST00000526204 CEND1Q8N111 149 aa15.88■□□□□ 0.13
VPS28-205ENST00000526204 NRGNQ92686 78 aa15.88■□□□□ 0.13
VPS28-205ENST00000526204 DOPEY1Q5JWR5 2465 aa15.88■□□□□ 0.13
VPS28-205ENST00000526204 A0A1W2PPM0 123 aa15.88■□□□□ 0.13
VPS28-205ENST00000526204 CD7P09564 240 aa15.88■□□□□ 0.13
VPS28-205ENST00000526204 OCIAD2Q56VL3 154 aa15.88■□□□□ 0.13
VPS28-205ENST00000526204 TRAV12-3A0A0B4J271 114 aa15.87■□□□□ 0.13
VPS28-205ENST00000526204 MAPKAPK5-AS1Q8N8E1 139 aa15.87■□□□□ 0.13
VPS28-205ENST00000526204 BAALCQ8WXS3 180 aa15.87■□□□□ 0.13
VPS28-205ENST00000526204 VPS13CQ709C8 3753 aa15.87■□□□□ 0.13
VPS28-205ENST00000526204 A0A096LNT2 108 aa15.86■□□□□ 0.13
VPS28-205ENST00000526204 ZNF688P0C7X2 276 aa15.86■□□□□ 0.13
VPS28-205ENST00000526204 A0A0J9YX75 114 aa15.86■□□□□ 0.13
VPS28-205ENST00000526204 OR11H12B2RN74 326 aa15.85■□□□□ 0.13
VPS28-205ENST00000526204 LGALS9O00182 355 aa15.85■□□□□ 0.13
VPS28-205ENST00000526204 TGFAP01135 160 aa15.85■□□□□ 0.13
VPS28-205ENST00000526204 FABP2P12104 132 aa15.85■□□□□ 0.13
VPS28-205ENST00000526204 C10orf99Q6UWK7 81 aa15.85■□□□□ 0.13
VPS28-205ENST00000526204 OR11H1Q8NG94 326 aa15.85■□□□□ 0.13
VPS28-205ENST00000526204 OR5A1Q8NGJ0 315 aa15.85■□□□□ 0.13
VPS28-205ENST00000526204 OR11H2Q8NH07 326 aa15.85■□□□□ 0.13
VPS28-205ENST00000526204 CYSLTR1Q9Y271 337 aa15.85■□□□□ 0.13
VPS28-205ENST00000526204 K7EQG2 157 aa15.85■□□□□ 0.13
VPS28-205ENST00000526204 USP9XQ93008 2570 aaPredicted RBP15.84■□□□□ 0.13
VPS28-205ENST00000526204 VCYO14598 125 aa15.84■□□□□ 0.13
VPS28-205ENST00000526204 ELANEP08246 267 aa15.84■□□□□ 0.13
VPS28-205ENST00000526204 LGALS1P09382 135 aaKnown RBP15.84■□□□□ 0.13
VPS28-205ENST00000526204 SAMD5Q5TGI4 173 aa15.84■□□□□ 0.13
VPS28-205ENST00000526204 WFDC12Q8WWY7 111 aa15.84■□□□□ 0.13
VPS28-205ENST00000526204 NAA38Q9BRA0 125 aaKnown RBP15.84■□□□□ 0.13
VPS28-205ENST00000526204 VPREB3Q9UKI3 123 aa15.84■□□□□ 0.13
VPS28-205ENST00000526204 PRSS29PA6NIE9 313 aa15.83■□□□□ 0.13
VPS28-205ENST00000526204 POLR2KP53803 58 aaKnown RBP15.83■□□□□ 0.13
VPS28-205ENST00000526204 SUMO4Q6EEV6 95 aa15.83■□□□□ 0.13
VPS28-205ENST00000526204 C9orf85Q96MD7 179 aa15.83■□□□□ 0.13
VPS28-205ENST00000526204 MYO18BQ8IUG5 2567 aa15.83■□□□□ 0.12
VPS28-205ENST00000526204 LINC01619G3V211 115 aa15.83■□□□□ 0.12
VPS28-205ENST00000526204 SYT8Q8NBV8 401 aa15.83■□□□□ 0.12
VPS28-205ENST00000526204 KIR2DL4Q99706 377 aa15.83■□□□□ 0.12
VPS28-205ENST00000526204 SPCS1Q9Y6A9 102 aa15.83■□□□□ 0.12
VPS28-205ENST00000526204 SPG11Q96JI7 2443 aa15.83■□□□□ 0.12
VPS28-205ENST00000526204 IGHV3-16A0A0C4DH30 117 aa15.82■□□□□ 0.12
VPS28-205ENST00000526204 MYMXA0A1B0GTQ4 84 aa15.82■□□□□ 0.12
VPS28-205ENST00000526204 PRB1P04280 392 aa15.82■□□□□ 0.12
VPS28-205ENST00000526204 K7ERU9 68 aa15.82■□□□□ 0.12
VPS28-205ENST00000526204 JPT2Q9H910 190 aa15.82■□□□□ 0.12
VPS28-205ENST00000526204 UTP20O75691 2785 aaKnown RBP15.81■□□□□ 0.12
VPS28-205ENST00000526204 E9PLD3 99 aa15.81■□□□□ 0.12
VPS28-205ENST00000526204 F5H697 171 aa15.81■□□□□ 0.12
VPS28-205ENST00000526204 DUSP14O95147 198 aaKnown RBP15.81■□□□□ 0.12
VPS28-205ENST00000526204 SYNJ2BPP57105 145 aa15.81■□□□□ 0.12
VPS28-205ENST00000526204 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.81■□□□□ 0.123e-7■■■■□ 19.9
VPS28-205ENST00000526204 PHLDA1Q8WV24 401 aaPredicted RBP15.81■□□□□ 0.12
VPS28-205ENST00000526204 NHP2Q9NX24 153 aaKnown RBP15.81■□□□□ 0.12
VPS28-205ENST00000526204 A0A087WWL8 130 aa15.8■□□□□ 0.12
VPS28-205ENST00000526204 TRBV6-5A0A0K0K1A5 114 aa15.8■□□□□ 0.12
VPS28-205ENST00000526204 ZFP2Q6ZN57 461 aa15.8■□□□□ 0.12
VPS28-205ENST00000526204 UBE2E2Q96LR5 201 aa15.8■□□□□ 0.12
VPS28-205ENST00000526204 HIST1H4GQ99525 98 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 210.6 ms