RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 PTH2Q96A98 100 aa14.34□□□□□ -0.11
VPS28-203ENST00000524521 IGHV3-73A0A0B4J1V6 119 aa14.33□□□□□ -0.12
VPS28-203ENST00000524521 TRBV6-1A0A0K0K1D8 114 aa14.33□□□□□ -0.12
VPS28-203ENST00000524521 LOC100131303A0A0U1RQF7 123 aa14.33□□□□□ -0.12
VPS28-203ENST00000524521 SH2D1AO60880 128 aa14.33□□□□□ -0.12
VPS28-203ENST00000524521 COX8CQ7Z4L0 72 aa14.33□□□□□ -0.12
VPS28-203ENST00000524521 TXNDC17Q9BRA2 123 aa14.33□□□□□ -0.12
VPS28-203ENST00000524521 HECTD4Q9Y4D8 3996 aa14.32□□□□□ -0.12
VPS28-203ENST00000524521 M0R036 132 aa14.32□□□□□ -0.12
VPS28-203ENST00000524521 CIDEAO60543 219 aa14.32□□□□□ -0.12
VPS28-203ENST00000524521 LTAP01374 205 aa14.32□□□□□ -0.12
VPS28-203ENST00000524521 FAM162BQ5T6X4 162 aa14.32□□□□□ -0.12
VPS28-203ENST00000524521 hCG_2014768A0A024R1R8 64 aa14.31□□□□□ -0.12
VPS28-203ENST00000524521 KRBOX1C9JBD0 128 aa14.31□□□□□ -0.12
VPS28-203ENST00000524521 EIF5AL1Q6IS14 154 aaKnown RBP14.31□□□□□ -0.12
VPS28-203ENST00000524521 NHLRC2Q8NBF2 726 aa14.31□□□□□ -0.12
VPS28-203ENST00000524521 FAT2Q9NYQ8 4349 aa14.31□□□□□ -0.12
VPS28-203ENST00000524521 SCO2A0A1W2PP80 73 aa14.3□□□□□ -0.12
VPS28-203ENST00000524521 GRIFINA4D1Z8 144 aa14.3□□□□□ -0.12
VPS28-203ENST00000524521 S100A9P06702 114 aaKnown RBP14.3□□□□□ -0.12
VPS28-203ENST00000524521 ZNF674Q2M3X9 581 aa14.3□□□□□ -0.12
VPS28-203ENST00000524521 SLC25A29Q8N8R3 303 aa14.3□□□□□ -0.12
VPS28-203ENST00000524521 IL36BQ9NZH7 164 aa14.3□□□□□ -0.12
VPS28-203ENST00000524521 H3BVH4 76 aa14.29□□□□□ -0.12
VPS28-203ENST00000524521 C1QBP02746 253 aa14.29□□□□□ -0.12
VPS28-203ENST00000524521 RAB5CP51148 216 aa14.29□□□□□ -0.12
VPS28-203ENST00000524521 CCL20P78556 96 aa14.29□□□□□ -0.12
VPS28-203ENST00000524521 SH2D6Q7Z4S9 175 aa14.29□□□□□ -0.12
VPS28-203ENST00000524521 PRADC1Q9BSG0 188 aa14.29□□□□□ -0.12
VPS28-203ENST00000524521 TMSB15BA0A087X1C1 80 aa14.28□□□□□ -0.12
VPS28-203ENST00000524521 TRBV6-4A0A1B0GX49 114 aa14.28□□□□□ -0.12
VPS28-203ENST00000524521 ARMS2P0C7Q2 107 aa14.28□□□□□ -0.12
VPS28-203ENST00000524521 GNG13Q9P2W3 67 aa14.28□□□□□ -0.12
VPS28-203ENST00000524521 A8MWV9 139 aa14.27□□□□□ -0.13
VPS28-203ENST00000524521 RHOHQ15669 191 aa14.27□□□□□ -0.13
VPS28-203ENST00000524521 DNLZQ5SXM8 178 aa14.27□□□□□ -0.13
VPS28-203ENST00000524521 TRAV1-1A0A0B4J248 108 aa14.26□□□□□ -0.13
VPS28-203ENST00000524521 MGST1P10620 155 aaKnown RBP14.26□□□□□ -0.13
VPS28-203ENST00000524521 BTF3P20290 206 aaKnown RBP14.26□□□□□ -0.13
VPS28-203ENST00000524521 SULT1A2P50226 295 aa14.26□□□□□ -0.13
VPS28-203ENST00000524521 LINC00315P59091 139 aa14.26□□□□□ -0.13
VPS28-203ENST00000524521 LINC01559Q495D7 138 aa14.26□□□□□ -0.13
VPS28-203ENST00000524521 PIK3CD-AS1Q5SR53 167 aa14.26□□□□□ -0.13
VPS28-203ENST00000524521 DMRTA1Q5VZB9 504 aa14.26□□□□□ -0.13
VPS28-203ENST00000524521 BAGE2Q86Y30 109 aa14.26□□□□□ -0.13
VPS28-203ENST00000524521 WFDC10BQ8IUB3 73 aa14.26□□□□□ -0.13
VPS28-203ENST00000524521 PARLQ9H300 379 aa14.26□□□□□ -0.13
VPS28-203ENST00000524521 JPT2Q9H910 190 aa14.26□□□□□ -0.13
VPS28-203ENST00000524521 MANBALQ9NQG1 85 aa14.26□□□□□ -0.13
VPS28-203ENST00000524521 LY96Q9Y6Y9 160 aa14.26□□□□□ -0.13
VPS28-203ENST00000524521 TRAV9-2A0A087WT02 112 aa14.25□□□□□ -0.13
VPS28-203ENST00000524521 TEX46H3BTG2 121 aa14.25□□□□□ -0.13
VPS28-203ENST00000524521 AKAP14Q86UN6 197 aa14.25□□□□□ -0.13
VPS28-203ENST00000524521 SLC51BQ86UW2 128 aa14.25□□□□□ -0.13
VPS28-203ENST00000524521 ZNF575Q86XF7 245 aa14.25□□□□□ -0.13
VPS28-203ENST00000524521 SYT8Q8NBV8 401 aa14.25□□□□□ -0.13
VPS28-203ENST00000524521 ZFP2Q6ZN57 461 aa14.24□□□□□ -0.13
VPS28-203ENST00000524521 Q6ZSN1 163 aa14.24□□□□□ -0.13
VPS28-203ENST00000524521 PHLDA3Q9Y5J5 127 aa14.24□□□□□ -0.13
VPS28-203ENST00000524521 MLST8Q9BVC4 326 aa14.23□□□□□ -0.13
VPS28-203ENST00000524521 SAMD10Q9BYL1 202 aa14.23□□□□□ -0.13
VPS28-203ENST00000524521 TNFRSF18Q9Y5U5 241 aa14.23□□□□□ -0.13
VPS28-203ENST00000524521 EVI2AP22794 236 aa14.22□□□□□ -0.13
VPS28-203ENST00000524521 TIRAPP58753 221 aa14.22□□□□□ -0.13
VPS28-203ENST00000524521 PKD1P98161 4303 aa14.22□□□□□ -0.13
VPS28-203ENST00000524521 M0R381 172 aa14.21□□□□□ -0.13
VPS28-203ENST00000524521 RPL35P42766 123 aaKnown RBP14.21□□□□□ -0.13
VPS28-203ENST00000524521 PRR27Q6MZM9 219 aa14.21□□□□□ -0.13
VPS28-203ENST00000524521 ATP6V0E2Q8NHE4 81 aa14.21□□□□□ -0.13
VPS28-203ENST00000524521 SCRT2Q9NQ03 307 aa14.21□□□□□ -0.13
VPS28-203ENST00000524521 DNAH10OSP0CZ25 163 aa14.2□□□□□ -0.14
VPS28-203ENST00000524521 MED14OSP0DP75 135 aa14.2□□□□□ -0.14
VPS28-203ENST00000524521 RPL19P84098 196 aaKnown RBP14.2□□□□□ -0.14
VPS28-203ENST00000524521 UFSP1Q6NVU6 142 aa14.2□□□□□ -0.14
VPS28-203ENST00000524521 DERL1Q9BUN8 251 aa14.2□□□□□ -0.14
VPS28-203ENST00000524521 TRAV8-6A0A0B4J262 113 aa14.19□□□□□ -0.14
VPS28-203ENST00000524521 A0A1B0GVG6 124 aa14.19□□□□□ -0.14
VPS28-203ENST00000524521 OR10J3Q5JRS4 329 aa14.19□□□□□ -0.14
VPS28-203ENST00000524521 FAM74A4Q5TZK3 123 aa14.19□□□□□ -0.14
VPS28-203ENST00000524521 ZFP82Q8N141 532 aa14.19□□□□□ -0.14
VPS28-203ENST00000524521 C9orf62Q8N4C0 152 aa14.19□□□□□ -0.14
VPS28-203ENST00000524521 C11orf52Q96A22 123 aa14.19□□□□□ -0.14
VPS28-203ENST00000524521 SFRP2Q96HF1 295 aa14.19□□□□□ -0.14
VPS28-203ENST00000524521 A0A087WWL8 130 aa14.18□□□□□ -0.14
VPS28-203ENST00000524521 GAGE12JA6NER3 117 aa14.18□□□□□ -0.14
VPS28-203ENST00000524521 C16orf90A8MZG2 172 aa14.18□□□□□ -0.14
VPS28-203ENST00000524521 K7EP13 123 aa14.18□□□□□ -0.14
VPS28-203ENST00000524521 RHODO00212 210 aa14.18□□□□□ -0.14
VPS28-203ENST00000524521 IFNA1P01562 189 aa14.18□□□□□ -0.14
VPS28-203ENST00000524521 GAGE1Q13065 139 aa14.18□□□□□ -0.14
VPS28-203ENST00000524521 GAGE4Q13068 117 aa14.18□□□□□ -0.14
VPS28-203ENST00000524521 GAGE5Q13069 117 aa14.18□□□□□ -0.14
VPS28-203ENST00000524521 GAGE13Q4V321 117 aa14.18□□□□□ -0.14
VPS28-203ENST00000524521 Q6ZRN7 208 aaPredicted RBP14.18□□□□□ -0.14
VPS28-203ENST00000524521 SPATA12Q7Z6I5 190 aa14.18□□□□□ -0.14
VPS28-203ENST00000524521 C14orf178Q8N769 122 aaPredicted RBP14.18□□□□□ -0.14
VPS28-203ENST00000524521 GTSF1LQ9H1H1 148 aa14.18□□□□□ -0.14
VPS28-203ENST00000524521 IGHV3-38A0A0C4DH36 116 aa14.17□□□□□ -0.14
VPS28-203ENST00000524521 CRYGDP07320 174 aa14.17□□□□□ -0.14
VPS28-203ENST00000524521 NFE4Q86UQ8 179 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms