RNA–Protein interactions for RNA: ENST00000518604.1

SQLE-202, Transcript of squalene epoxidase, humanhuman

TSL 2

Gene SQLE, Length 743 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQLE-202ENST00000518604 IGHV3-30-5P0DP03 117 aa0.71□□□□□ -2.3
SQLE-202ENST00000518604 LSM3P62310 102 aaKnown RBP0.71□□□□□ -2.3
SQLE-202ENST00000518604 SELENOWP63302 87 aa0.71□□□□□ -2.3
SQLE-202ENST00000518604 SPCS2Q15005 226 aa0.71□□□□□ -2.3
SQLE-202ENST00000518604 SLC25A26Q70HW3 274 aa0.71□□□□□ -2.3
SQLE-202ENST00000518604 ATP6V0E2Q8NHE4 81 aa0.71□□□□□ -2.3
SQLE-202ENST00000518604 C1orf54Q8WWF1 131 aa0.71□□□□□ -2.3
SQLE-202ENST00000518604 ARL11Q969Q4 196 aa0.71□□□□□ -2.3
SQLE-202ENST00000518604 DPH3Q96FX2 82 aa0.71□□□□□ -2.3
SQLE-202ENST00000518604 SMIM7Q9BQ49 75 aa0.71□□□□□ -2.3
SQLE-202ENST00000518604 C2orf88Q9BSF0 95 aa0.71□□□□□ -2.3
SQLE-202ENST00000518604 TMEM191AQ9H0A3 160 aa0.71□□□□□ -2.3
SQLE-202ENST00000518604 MYH7P12883 1935 aa0.71□□□□□ -2.3
SQLE-202ENST00000518604 ABCA4P78363 2273 aa0.71□□□□□ -2.3
SQLE-202ENST00000518604 LAMB1P07942 1786 aa0.7□□□□□ -2.3
SQLE-202ENST00000518604 A0A0G2JMM0 328 aa0.7□□□□□ -2.3
SQLE-202ENST00000518604 NBDYA0A0U1RRE5 68 aa0.7□□□□□ -2.3
SQLE-202ENST00000518604 A0A1W2PPB8 328 aa0.7□□□□□ -2.3
SQLE-202ENST00000518604 A0A1W2PRS3 328 aa0.7□□□□□ -2.3
SQLE-202ENST00000518604 KIR3DP1A8MWS1 328 aa0.7□□□□□ -2.3
SQLE-202ENST00000518604 J3QR89 54 aa0.7□□□□□ -2.3
SQLE-202ENST00000518604 LINC01545Q5VT33 79 aa0.7□□□□□ -2.3
SQLE-202ENST00000518604 LYPD5Q6UWN5 251 aa0.7□□□□□ -2.3
SQLE-202ENST00000518604 LINC00299Q6ZSB3 139 aa0.7□□□□□ -2.3
SQLE-202ENST00000518604 DEFB132Q7Z7B7 95 aa0.7□□□□□ -2.3
SQLE-202ENST00000518604 WFDC10AQ9H1F0 79 aa0.7□□□□□ -2.3
SQLE-202ENST00000518604 NOP16Q9Y3C1 178 aaKnown RBP0.7□□□□□ -2.3
SQLE-202ENST00000518604 ASCC3Q8N3C0 2202 aaKnown RBP0.7□□□□□ -2.3
SQLE-202ENST00000518604 RBP4P02753 201 aa0.69□□□□□ -2.3
SQLE-202ENST00000518604 TFF1P04155 84 aa0.69□□□□□ -2.3
SQLE-202ENST00000518604 PYYP10082 97 aa0.69□□□□□ -2.3
SQLE-202ENST00000518604 RHOHQ15669 191 aa0.69□□□□□ -2.3
SQLE-202ENST00000518604 C3orf62Q6ZUJ4 267 aa0.69□□□□□ -2.3
SQLE-202ENST00000518604 KIAA0100Q14667 2235 aaKnown RBP0.69□□□□□ -2.3
SQLE-202ENST00000518604 CUL7Q14999 1698 aa0.69□□□□□ -2.3
SQLE-202ENST00000518604 SPEF2Q9C093 1822 aa0.68□□□□□ -2.3
SQLE-202ENST00000518604 CDK12Q9NYV4 1490 aaPredicted RBP0.68□□□□□ -2.3
SQLE-202ENST00000518604 WDR7Q9Y4E6 1490 aa0.68□□□□□ -2.3
SQLE-202ENST00000518604 DLEC1Q9Y238 1755 aa0.68□□□□□ -2.3
SQLE-202ENST00000518604 TRAV12-2A0A075B6T6 113 aa0.68□□□□□ -2.3
SQLE-202ENST00000518604 BBIP1A8MTZ0 92 aa0.68□□□□□ -2.3
SQLE-202ENST00000518604 CCDC179H3BU77 68 aa0.68□□□□□ -2.3
SQLE-202ENST00000518604 J3QLW9 94 aa0.68□□□□□ -2.3
SQLE-202ENST00000518604 CITO14578 2027 aa0.68□□□□□ -2.3
SQLE-202ENST00000518604 YPEL1O60688 119 aa0.68□□□□□ -2.3
SQLE-202ENST00000518604 IL7P13232 177 aa0.68□□□□□ -2.3
SQLE-202ENST00000518604 RPL37AP61513 92 aaKnown RBP0.68□□□□□ -2.3
SQLE-202ENST00000518604 OCIAD2Q56VL3 154 aa0.68□□□□□ -2.3
SQLE-202ENST00000518604 IDO2Q6ZQW0 420 aa0.68□□□□□ -2.3
SQLE-202ENST00000518604 ATOH7Q8N100 152 aa0.68□□□□□ -2.3
SQLE-202ENST00000518604 VSTM2AQ8TAG5 236 aa0.68□□□□□ -2.3
SQLE-202ENST00000518604 DYNLRB2Q8TF09 96 aa0.68□□□□□ -2.3
SQLE-202ENST00000518604 LSM10Q969L4 123 aaKnown RBP0.68□□□□□ -2.3
SQLE-202ENST00000518604 SAR1AQ9NR31 198 aa0.68□□□□□ -2.3
SQLE-202ENST00000518604 TAS2R8Q9NYW2 309 aa0.68□□□□□ -2.3
SQLE-202ENST00000518604 ZNF142P52746 1687 aaPredicted RBP0.68□□□□□ -2.3
SQLE-202ENST00000518604 SNRNP200O75643 2136 aaKnown RBP0.67□□□□□ -2.3
SQLE-202ENST00000518604 MYH9P35579 1960 aaKnown RBP0.67□□□□□ -2.3
SQLE-202ENST00000518604 ZDBF2Q9HCK1 2354 aa0.67□□□□□ -2.3
SQLE-202ENST00000518604 TMEM30CPA0ZSE6 113 aa0.67□□□□□ -2.3
SQLE-202ENST00000518604 TPST1O60507 370 aa0.67□□□□□ -2.3
SQLE-202ENST00000518604 APODP05090 189 aa0.67□□□□□ -2.3
SQLE-202ENST00000518604 SLC25A6P12236 298 aa0.67□□□□□ -2.3
SQLE-202ENST00000518604 SPATA8Q6RVD6 105 aa0.67□□□□□ -2.3
SQLE-202ENST00000518604 SCIMPQ6UWF3 145 aa0.67□□□□□ -2.3
SQLE-202ENST00000518604 ZNF436-AS1Q8NC38 126 aaPredicted RBP0.67□□□□□ -2.3
SQLE-202ENST00000518604 DMAC1Q96GE9 116 aa0.67□□□□□ -2.3
SQLE-202ENST00000518604 SNRNP25Q9BV90 132 aaKnown RBP0.67□□□□□ -2.3
SQLE-202ENST00000518604 MRPL36Q9P0J6 103 aaKnown RBP0.67□□□□□ -2.3
SQLE-202ENST00000518604 NDUFA12Q9UI09 145 aa0.67□□□□□ -2.3
SQLE-202ENST00000518604 RREB1Q92766 1687 aa0.67□□□□□ -2.3
SQLE-202ENST00000518604 A2ML1A8K2U0 1454 aa0.67□□□□□ -2.3
SQLE-202ENST00000518604 CFTRP13569 1480 aa0.67□□□□□ -2.3
SQLE-202ENST00000518604 SPAG17Q6Q759 2223 aa0.66□□□□□ -2.3
SQLE-202ENST00000518604 RIMS1Q86UR5 1692 aaKnown RBP0.66□□□□□ -2.3
SQLE-202ENST00000518604 TRAV23DV6A0A075B6W5 121 aa0.66□□□□□ -2.3
SQLE-202ENST00000518604 TRAV2A0A0B4J234 112 aa0.66□□□□□ -2.3
SQLE-202ENST00000518604 TRAV17A0A0B4J275 112 aa0.66□□□□□ -2.3
SQLE-202ENST00000518604 TRBV10-1A0A0K0K1A3 114 aa0.66□□□□□ -2.3
SQLE-202ENST00000518604 GYPBP06028 91 aa0.66□□□□□ -2.3
SQLE-202ENST00000518604 PIRTP0C851 137 aa0.66□□□□□ -2.3
SQLE-202ENST00000518604 GUCA1AP43080 201 aaPredicted RBP0.66□□□□□ -2.3
SQLE-202ENST00000518604 POLR2JP52435 117 aaKnown RBP0.66□□□□□ -2.3
SQLE-202ENST00000518604 FXYD4P59646 89 aa0.66□□□□□ -2.3
SQLE-202ENST00000518604 BTG2P78543 158 aa0.66□□□□□ -2.3
SQLE-202ENST00000518604 SPATA45Q537H7 98 aa0.66□□□□□ -2.3
SQLE-202ENST00000518604 MEIG1Q5JSS6 88 aa0.66□□□□□ -2.3
SQLE-202ENST00000518604 PPDPFLQ8WWR9 84 aa0.66□□□□□ -2.3
SQLE-202ENST00000518604 AGPAT4-IT1Q9H0P7 198 aa0.66□□□□□ -2.3
SQLE-202ENST00000518604 CCDC167Q9P0B6 97 aa0.66□□□□□ -2.3
SQLE-202ENST00000518604 ZNF518AQ6AHZ1 1483 aa0.66□□□□□ -2.3
SQLE-202ENST00000518604 EIF4G3O43432 1585 aaKnown RBP0.66□□□□□ -2.3
SQLE-202ENST00000518604 SPTBP11277 2137 aa0.65□□□□□ -2.3
SQLE-202ENST00000518604 SMG6Q86US8 1419 aaKnown RBP0.65□□□□□ -2.3
SQLE-202ENST00000518604 PLXNA1Q9UIW2 1896 aa0.65□□□□□ -2.3
SQLE-202ENST00000518604 SHROOM2Q13796 1616 aa0.65□□□□□ -2.31
SQLE-202ENST00000518604 LOC101927531A0A1B0GV80 90 aa0.65□□□□□ -2.31
SQLE-202ENST00000518604 HIST1H1DP16402 221 aaKnown RBP0.65□□□□□ -2.31
SQLE-202ENST00000518604 NPC2P61916 151 aa0.65□□□□□ -2.31
SQLE-202ENST00000518604 FXYD3Q14802 87 aa0.65□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms