RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 IGLV2-8P01709 118 aa8.41□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 P0C879 139 aa8.41□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 LAGE3Q14657 143 aa8.41□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 TAL2Q16559 108 aa8.41□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 TET2Q6N021 2002 aaPredicted RBP8.41□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 ERCC8Q13216 396 aa8.41□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 ZNF56Q15929 161 aa8.41□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 PATE2Q6UY27 113 aa8.41□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 TRAV41A0A0B4J266 112 aa8.4□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 IGLV2-23P01705 113 aa8.4□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 HOXB4P17483 251 aaPredicted RBP8.4□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 TMEM75Q8N9X5 138 aa8.4□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 EEF1AKMT3Q96AZ1 226 aa8.4□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 FABP5P3A8MUU1 101 aa8.4□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 H7C1H1 209 aa8.4□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 M0R381 172 aa8.4□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 EIF4EBP1Q13541 118 aaPredicted RBP8.4□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 CUBNO60494 3623 aa8.4□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 M0R1W7 72 aa8.4□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 TNFRSF6BO95407 300 aa8.4□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 MSMBP08118 114 aa8.4□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 FXYD5Q96DB9 178 aa8.4□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 C2orf82Q6UX34 121 aa8.39□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 TEN1Q86WV5 123 aa8.39□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 OR13C6PQ8NH95 151 aa8.39□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 C15orf53Q8NAA6 179 aa8.39□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 OR11H6Q8NGC7 330 aa8.39□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 IGHV4-59P01825 116 aa8.39□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 INSL3P51460 131 aa8.39□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 PIP4P2Q8N4L2 257 aa8.39□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 Q96MF0 132 aa8.39□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 SPATA25Q9BR10 227 aa8.39□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 PHLDA3Q9Y5J5 127 aa8.39□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 SPENQ96T58 3664 aaKnown RBP8.39□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 ATRQ13535 2644 aa8.38□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 CENPVL3A0A0U1RRI6 287 aa8.38□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 B4DSR2 109 aa8.38□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 OVOL3O00110 214 aa8.38□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 SLC25A20O43772 301 aa8.38□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 SH2D1AO60880 128 aa8.38□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 HLA-DRB4P13762 266 aa8.38□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 UBE2E1P51965 193 aa8.38□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 PRORYQ9H606 182 aa8.38□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 HIGD1BQ9P298 99 aa8.38□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 HLA-DRB4X5D2U9 266 aa8.38□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 CSMD1Q96PZ7 3565 aa8.38□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 MYMXA0A1B0GTQ4 84 aa8.38□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 A0A1B0GXF2 115 aa8.38□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 FAM74A4Q5TZK3 123 aa8.38□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 LINC00311Q8N616 119 aa8.38□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 IGKV1-17P01599 117 aa8.38□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 NTN5Q8WTR8 489 aaPredicted RBP8.38□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 LOXL1Q08397 574 aaPredicted RBP8.37□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 POU2AF1Q16633 256 aa8.37□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 CR1LQ2VPA4 569 aa8.37□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 OR10J6PQ8NGY7 276 aa8.37□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 EDA2RQ9HAV5 297 aa8.37□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 RAI1Q7Z5J4 1906 aaPredicted RBP8.37□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 IGHV1-69DA0A0B4J2H0 117 aa8.37□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 E9PLD3 99 aa8.37□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 IGHV1-69P01742 117 aa8.37□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 SLC25A16P16260 332 aa8.37□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 PAX8Q06710 450 aa8.37□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 FAM106AQ4KMX7 169 aa8.37□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 C8orf49Q96NF6 230 aa8.37□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 TRGV9Q99603 122 aa8.37□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 TRAV12-3A0A0B4J271 114 aa8.37□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 ORMDL2Q53FV1 153 aa8.37□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 MBD6Q96DN6 1003 aa8.37□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 ZNF503Q96F45 646 aa8.37□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 MOB4Q9Y3A3 225 aa8.37□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 IGHV7-81A0A0B4J1V7 117 aa8.36□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 DEFB136Q30KP8 78 aa8.36□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 TMEM101Q96IK0 257 aa8.36□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 BBC3Q96PG8 261 aaPredicted RBP8.36□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 PAPPA-AS1Q5QFB9 102 aa8.36□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 KIR2DL4Q99706 377 aa8.36□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 K7EIM0 57 aa8.36□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 ATXN8Q156A1 80 aa8.36□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 FBXL19-AS1Q494R0 122 aa8.36□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 FAM167A-AS1Q96KT0 104 aa8.36□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 TEX22C9J3V5 150 aa8.35□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 F6UB75 175 aa8.35□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 FGF6P10767 208 aa8.35□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 MINOS1Q5TGZ0 78 aa8.35□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 FAM159AQ6UWV7 190 aa8.35□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 PRADC1Q9BSG0 188 aa8.35□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 MINOS1-NBL1R4GNA1 71 aa8.35□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 LMO4P61968 165 aa8.35□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 DYNLRB2Q8TF09 96 aa8.35□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 GCN1Q92616 2671 aaKnown RBP8.35□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 RPL32P62910 135 aaKnown RBP8.35□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 DEFB112Q30KQ8 113 aa8.35□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 ZNF491Q8N8L2 437 aa8.35□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 PRSS46E5RG02 174 aa8.34□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 H3BMM0 161 aa8.34□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 RNASE4P34096 147 aaKnown RBP8.34□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 KRTAP10-9P60411 292 aa8.34□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 PVRIGQ6DKI7 326 aa8.34□□□□□ -1.07
MSH5-SAPCD1-207ENST00000493662 UBE2WQ96B02 151 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms