RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 C5orf38Q86SI9 138 aa13.71□□□□□ -0.22
NPHP4-209ENST00000489180 SPTAN1Q13813 2472 aaKnown RBP13.71□□□□□ -0.22
NPHP4-209ENST00000489180 NOTCH3Q9UM47 2321 aa13.71□□□□□ -0.22
NPHP4-209ENST00000489180 IGHV4-4A0A075B6R2 117 aa13.71□□□□□ -0.22
NPHP4-209ENST00000489180 LINC01545Q5VT33 79 aa13.71□□□□□ -0.22
NPHP4-209ENST00000489180 IGLV2-23P01705 113 aa13.7□□□□□ -0.22
NPHP4-209ENST00000489180 DEFB105AQ8NG35 78 aa13.7□□□□□ -0.22
NPHP4-209ENST00000489180 IGHV4-38-2P0DP08 117 aa13.7□□□□□ -0.22
NPHP4-209ENST00000489180 DENND4CQ5VZ89 1909 aa13.7□□□□□ -0.22
NPHP4-209ENST00000489180 PRAC2D3DTV9 90 aa13.7□□□□□ -0.22
NPHP4-209ENST00000489180 SPANXA1Q9NS26 97 aa13.7□□□□□ -0.22
NPHP4-209ENST00000489180 CTSGP08311 255 aa13.7□□□□□ -0.22
NPHP4-209ENST00000489180 MUSTN1Q8IVN3 82 aa13.7□□□□□ -0.22
NPHP4-209ENST00000489180 EML6Q6ZMW3 1958 aa13.7□□□□□ -0.22
NPHP4-209ENST00000489180 FAM167A-AS1Q96KT0 104 aa13.69□□□□□ -0.22
NPHP4-209ENST00000489180 IGLV11-55A0A075B6I3 123 aa13.69□□□□□ -0.22
NPHP4-209ENST00000489180 A0A0J9YXV3 536 aa13.69□□□□□ -0.22
NPHP4-209ENST00000489180 NPBQ8NG41 125 aa13.69□□□□□ -0.22
NPHP4-209ENST00000489180 hADV29S1A0JD25 119 aa13.69□□□□□ -0.22
NPHP4-209ENST00000489180 ZFP2Q6ZN57 461 aa13.69□□□□□ -0.22
NPHP4-209ENST00000489180 SLC25A29Q8N8R3 303 aa13.69□□□□□ -0.22
NPHP4-209ENST00000489180 AJUBAQ96IF1 538 aa13.69□□□□□ -0.22
NPHP4-209ENST00000489180 IGLV2-14P01704 120 aa13.68□□□□□ -0.22
NPHP4-209ENST00000489180 SS18L2Q9UHA2 77 aa13.68□□□□□ -0.22
NPHP4-209ENST00000489180 ABCA4P78363 2273 aa13.68□□□□□ -0.22
NPHP4-209ENST00000489180 PLA2G5P39877 138 aa13.68□□□□□ -0.22
NPHP4-209ENST00000489180 BLCAPP62952 87 aa13.68□□□□□ -0.22
NPHP4-209ENST00000489180 IGKV1OR2-108A0A075B7D4 117 aa13.68□□□□□ -0.22
NPHP4-209ENST00000489180 FXYD2P54710 66 aa13.68□□□□□ -0.22
NPHP4-209ENST00000489180 RPL39P62891 51 aaKnown RBP13.68□□□□□ -0.22
NPHP4-209ENST00000489180 VPREB3Q9UKI3 123 aa13.68□□□□□ -0.22
NPHP4-209ENST00000489180 B5MCH6 92 aa13.68□□□□□ -0.22
NPHP4-209ENST00000489180 Q6ZSR3 168 aa13.67□□□□□ -0.22
NPHP4-209ENST00000489180 DAND5Q8N907 189 aa13.67□□□□□ -0.22
NPHP4-209ENST00000489180 LENEPQ9Y5L5 61 aa13.67□□□□□ -0.22
NPHP4-209ENST00000489180 CGB3P0DN86 165 aa13.67□□□□□ -0.22
NPHP4-209ENST00000489180 E7EUB6 86 aa13.67□□□□□ -0.22
NPHP4-209ENST00000489180 RNF138Q8WVD3 245 aa13.66□□□□□ -0.22
NPHP4-209ENST00000489180 DKK4Q9UBT3 224 aa13.66□□□□□ -0.22
NPHP4-209ENST00000489180 IGKV2D-24A0A075B6R9 120 aa13.66□□□□□ -0.22
NPHP4-209ENST00000489180 TRAV4A0A0B4J268 109 aa13.66□□□□□ -0.22
NPHP4-209ENST00000489180 IGHV4-61A0A0C4DH41 118 aa13.66□□□□□ -0.22
NPHP4-209ENST00000489180 A4D1N5 150 aa13.66□□□□□ -0.22
NPHP4-209ENST00000489180 ORMDL1Q9P0S3 153 aa13.66□□□□□ -0.22
NPHP4-209ENST00000489180 SHANK1Q9Y566 2161 aa13.66□□□□□ -0.22
NPHP4-209ENST00000489180 DEFB1P60022 68 aa13.66□□□□□ -0.22
NPHP4-209ENST00000489180 MRPL36Q9P0J6 103 aaKnown RBP13.65□□□□□ -0.22
NPHP4-209ENST00000489180 IGLV10-54A0A075B6I4 117 aa13.65□□□□□ -0.22
NPHP4-209ENST00000489180 CCL24O00175 119 aa13.65□□□□□ -0.22
NPHP4-209ENST00000489180 PIP4P1Q86T03 277 aa13.65□□□□□ -0.22
NPHP4-209ENST00000489180 DYSFO75923 2080 aa13.64□□□□□ -0.23
NPHP4-209ENST00000489180 BUB3O43684 328 aa13.64□□□□□ -0.23
NPHP4-209ENST00000489180 CACNA1HO95180 2353 aa13.64□□□□□ -0.23
NPHP4-209ENST00000489180 PCNX1Q96RV3 2341 aa13.64□□□□□ -0.23
NPHP4-209ENST00000489180 RNASE8Q8TDE3 154 aaKnown RBP13.64□□□□□ -0.23
NPHP4-209ENST00000489180 MALRD1Q5VYJ5 2156 aa13.64□□□□□ -0.23
NPHP4-209ENST00000489180 WFDC2Q14508 124 aa13.63□□□□□ -0.23
NPHP4-209ENST00000489180 Q9HAA7 133 aa13.63□□□□□ -0.23
NPHP4-209ENST00000489180 ICOSQ9Y6W8 199 aa13.63□□□□□ -0.23
NPHP4-209ENST00000489180 TANC1Q9C0D5 1861 aa13.63□□□□□ -0.23
NPHP4-209ENST00000489180 C16orf54Q6UWD8 224 aa13.63□□□□□ -0.23
NPHP4-209ENST00000489180 TEX22C9J3V5 150 aa13.62□□□□□ -0.23
NPHP4-209ENST00000489180 PRSS47A8MTI9 375 aa13.62□□□□□ -0.23
NPHP4-209ENST00000489180 IGHV4-30-2A0A087WSY4 118 aa13.62□□□□□ -0.23
NPHP4-209ENST00000489180 WI2-2373I1.2A0A1W2PRP0 233 aa13.62□□□□□ -0.23
NPHP4-209ENST00000489180 ODF3L1Q8IXM7 274 aa13.62□□□□□ -0.23
NPHP4-209ENST00000489180 K7EQD1 137 aa13.62□□□□□ -0.23
NPHP4-209ENST00000489180 TAX1BP3O14907 124 aa13.62□□□□□ -0.23
NPHP4-209ENST00000489180 BAALCQ8WXS3 180 aa13.62□□□□□ -0.23
NPHP4-209ENST00000489180 Q8N9W7 124 aa13.61□□□□□ -0.23
NPHP4-209ENST00000489180 ESM1Q9NQ30 184 aa13.61□□□□□ -0.23
NPHP4-209ENST00000489180 PLXNB3Q9ULL4 1909 aa13.61□□□□□ -0.23
NPHP4-209ENST00000489180 HERV-K104P63124 156 aa13.61□□□□□ -0.23
NPHP4-209ENST00000489180 Q8N1Y9 231 aa13.61□□□□□ -0.23
NPHP4-209ENST00000489180 GTF3C1Q12789 2109 aa13.61□□□□□ -0.23
NPHP4-209ENST00000489180 CGB7P0DN87 165 aa13.61□□□□□ -0.23
NPHP4-209ENST00000489180 GYPEP15421 78 aa13.6□□□□□ -0.23
NPHP4-209ENST00000489180 NBL1P41271 181 aa13.6□□□□□ -0.23
NPHP4-209ENST00000489180 SND1-IT1Q9HBX3 110 aa13.6□□□□□ -0.23
NPHP4-209ENST00000489180 MED13Q9UHV7 2174 aa13.6□□□□□ -0.23
NPHP4-209ENST00000489180 RBM3P98179 157 aaKnown RBP13.59□□□□□ -0.23
NPHP4-209ENST00000489180 SPANXDQ9BXN6 97 aa13.59□□□□□ -0.23
NPHP4-209ENST00000489180 IGKV3D-7A0A0C4DH55 119 aa13.59□□□□□ -0.23
NPHP4-209ENST00000489180 IGFL2Q6UWQ7 119 aa13.59□□□□□ -0.23
NPHP4-209ENST00000489180 IGHV4-28A0A0C4DH34 117 aa13.59□□□□□ -0.23
NPHP4-209ENST00000489180 C5orf56Q8N8D9 126 aa13.59□□□□□ -0.23
NPHP4-209ENST00000489180 RPL18AQ02543 176 aaKnown RBP13.58□□□□□ -0.24
NPHP4-209ENST00000489180 IGHV4OR15-8A0A075B7B6 117 aa13.58□□□□□ -0.24
NPHP4-209ENST00000489180 A0A087WW49 117 aa13.58□□□□□ -0.24
NPHP4-209ENST00000489180 NRGNQ92686 78 aa13.58□□□□□ -0.24
NPHP4-209ENST00000489180 RMI2Q96E14 147 aa13.58□□□□□ -0.24
NPHP4-209ENST00000489180 TOMM6Q96B49 74 aa13.58□□□□□ -0.24
NPHP4-209ENST00000489180 NDUFS5O43920 106 aa13.58□□□□□ -0.24
NPHP4-209ENST00000489180 UBE2BP63146 152 aa13.58□□□□□ -0.24
NPHP4-209ENST00000489180 HIST2H2BCQ6DN03 193 aa13.58□□□□□ -0.24
NPHP4-209ENST00000489180 COX7B2Q8TF08 81 aa13.58□□□□□ -0.24
NPHP4-209ENST00000489180 IGHV3-30P01768 117 aa13.57□□□□□ -0.24
NPHP4-209ENST00000489180 IGHV3-33P01772 117 aa13.57□□□□□ -0.24
NPHP4-209ENST00000489180 IGHV3-30-3P0DP02 117 aa13.57□□□□□ -0.24
NPHP4-209ENST00000489180 IGHV3-30-5P0DP03 117 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms