RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 ZNF575Q86XF7 245 aa14.31□□□□□ -0.12
CCM2-216ENST00000488727 DEFB125Q8N687 156 aa14.31□□□□□ -0.12
CCM2-216ENST00000488727 TPPP3Q9BW30 176 aa14.31□□□□□ -0.12
CCM2-216ENST00000488727 CNFNQ9BYD5 112 aa14.31□□□□□ -0.12
CCM2-216ENST00000488727 AGPAT4-IT1Q9H0P7 198 aa14.31□□□□□ -0.12
CCM2-216ENST00000488727 U3KQK5 164 aa14.31□□□□□ -0.12
CCM2-216ENST00000488727 ZNF138P52744 262 aa14.3□□□□□ -0.12
CCM2-216ENST00000488727 HIST1H1AQ02539 215 aaPredicted RBP14.3□□□□□ -0.12
CCM2-216ENST00000488727 ZNF124Q15973 351 aa14.3□□□□□ -0.12
CCM2-216ENST00000488727 EBLN2Q6P2I7 272 aa14.3□□□□□ -0.12
CCM2-216ENST00000488727 FAM110AQ9BQ89 295 aa14.3□□□□□ -0.12
CCM2-216ENST00000488727 IGHV1-24A0A0C4DH33 117 aa14.29□□□□□ -0.12
CCM2-216ENST00000488727 BTF3P20290 206 aaKnown RBP14.29□□□□□ -0.12
CCM2-216ENST00000488727 DEFB131AP59861 70 aa14.29□□□□□ -0.12
CCM2-216ENST00000488727 PMCHL1Q16048 86 aa14.29□□□□□ -0.12
CCM2-216ENST00000488727 TMEM78Q5T7P6 136 aa14.29□□□□□ -0.12
CCM2-216ENST00000488727 FAM104BQ5XKR9 115 aa14.29□□□□□ -0.12
CCM2-216ENST00000488727 APRG1Q8IVJ8 170 aa14.29□□□□□ -0.12
CCM2-216ENST00000488727 OR5AL1P0C617 328 aa14.29□□□□□ -0.12
CCM2-216ENST00000488727 IGHV4-30-4P0DP06 118 aa14.29□□□□□ -0.12
CCM2-216ENST00000488727 MRAPQ8TCY5 172 aa14.29□□□□□ -0.12
CCM2-216ENST00000488727 C16orf92Q96LL3 132 aa14.29□□□□□ -0.12
CCM2-216ENST00000488727 PAM16Q9Y3D7 125 aa14.29□□□□□ -0.12
CCM2-216ENST00000488727 LENEPQ9Y5L5 61 aa14.29□□□□□ -0.12
CCM2-216ENST00000488727 PSMG4Q5JS54 123 aa14.28□□□□□ -0.12
CCM2-216ENST00000488727 MRPL52Q86TS9 123 aaKnown RBP14.28□□□□□ -0.12
CCM2-216ENST00000488727 MIEN1Q9BRT3 115 aa14.28□□□□□ -0.12
CCM2-216ENST00000488727 SNRPD3P62318 126 aaKnown RBP14.27□□□□□ -0.12
CCM2-216ENST00000488727 C20orf173Q96LM9 149 aa14.27□□□□□ -0.12
CCM2-216ENST00000488727 C2orf88Q9BSF0 95 aa14.27□□□□□ -0.12
CCM2-216ENST00000488727 CRXO43186 299 aaPredicted RBP14.27□□□□□ -0.13
CCM2-216ENST00000488727 ORM1P02763 201 aa14.27□□□□□ -0.13
CCM2-216ENST00000488727 DEFB121Q5J5C9 76 aa14.27□□□□□ -0.13
CCM2-216ENST00000488727 AGRNO00468 2067 aa14.26□□□□□ -0.13
CCM2-216ENST00000488727 ID1P41134 155 aa14.26□□□□□ -0.13
CCM2-216ENST00000488727 CMC4P56277 68 aaPredicted RBP14.26□□□□□ -0.13
CCM2-216ENST00000488727 SAMD13Q5VXD3 122 aa14.26□□□□□ -0.13
CCM2-216ENST00000488727 TMEM70Q9BUB7 260 aa14.26□□□□□ -0.13
CCM2-216ENST00000488727 A8MZ25 164 aa14.25□□□□□ -0.13
CCM2-216ENST00000488727 DEFB1P60022 68 aa14.25□□□□□ -0.13
CCM2-216ENST00000488727 TMEM191AQ9H0A3 160 aa14.25□□□□□ -0.13
CCM2-216ENST00000488727 LEPROTL1O95214 131 aa14.24□□□□□ -0.13
CCM2-216ENST00000488727 SPATA45Q537H7 98 aa14.24□□□□□ -0.13
CCM2-216ENST00000488727 AMN1Q8IY45 258 aa14.24□□□□□ -0.13
CCM2-216ENST00000488727 ORMDL3Q8N138 153 aa14.24□□□□□ -0.13
CCM2-216ENST00000488727 PRKDCP78527 4128 aaKnown RBP14.24□□□□□ -0.13
CCM2-216ENST00000488727 MRPL51Q4U2R6 128 aaKnown RBP14.24□□□□□ -0.13
CCM2-216ENST00000488727 IGKV3D-20A0A0C4DH25 116 aa14.23□□□□□ -0.13
CCM2-216ENST00000488727 C20orf202A1L168 122 aa14.23□□□□□ -0.13
CCM2-216ENST00000488727 RBMY1BA6NDE4 496 aaKnown RBP14.23□□□□□ -0.13
CCM2-216ENST00000488727 RBMY1EA6NEQ0 496 aaKnown RBP14.23□□□□□ -0.13
CCM2-216ENST00000488727 KNCNA6PVL3 124 aa14.23□□□□□ -0.13
CCM2-216ENST00000488727 D6R8Y8 96 aa14.23□□□□□ -0.13
CCM2-216ENST00000488727 RBMY1DP0C7P1 496 aaKnown RBP14.23□□□□□ -0.13
CCM2-216ENST00000488727 TWIST1Q15672 202 aa14.23□□□□□ -0.13
CCM2-216ENST00000488727 ZNF738Q8NE65 137 aa14.23□□□□□ -0.13
CCM2-216ENST00000488727 LINC00477Q96M19 166 aa14.23□□□□□ -0.13
CCM2-216ENST00000488727 PRELID3AQ96N28 172 aa14.23□□□□□ -0.13
CCM2-216ENST00000488727 AP5S1Q9NUS5 200 aa14.23□□□□□ -0.13
CCM2-216ENST00000488727 FA2HQ7L5A8 372 aa14.22□□□□□ -0.13
CCM2-216ENST00000488727 HSPB8Q9UJY1 196 aa14.22□□□□□ -0.13
CCM2-216ENST00000488727 F6UB75 175 aa14.21□□□□□ -0.13
CCM2-216ENST00000488727 SYS1-DBNDD2H3BUS1 97 aa14.21□□□□□ -0.13
CCM2-216ENST00000488727 C11orf21Q9P2W6 132 aa14.21□□□□□ -0.13
CCM2-216ENST00000488727 M0R143 59 aa14.21□□□□□ -0.14
CCM2-216ENST00000488727 EREGO14944 169 aa14.21□□□□□ -0.14
CCM2-216ENST00000488727 PRSS3P2Q8NHM4 247 aa14.21□□□□□ -0.14
CCM2-216ENST00000488727 TRAV9-2A0A087WT02 112 aa14.2□□□□□ -0.14
CCM2-216ENST00000488727 ZNF705AQ6ZN79 300 aaPredicted RBP14.2□□□□□ -0.14
CCM2-216ENST00000488727 SPATA12Q7Z6I5 190 aa14.2□□□□□ -0.14
CCM2-216ENST00000488727 OR10J6PQ8NGY7 276 aa14.2□□□□□ -0.14
CCM2-216ENST00000488727 SNHG12Q9BXW3 62 aa14.2□□□□□ -0.14
CCM2-216ENST00000488727 MUC21A0A0G2JKD1 596 aa14.19□□□□□ -0.14
CCM2-216ENST00000488727 TRBV7-9A0A0J9YWB2 115 aa14.19□□□□□ -0.14
CCM2-216ENST00000488727 MUC21A0A140T8X8 626 aa14.19□□□□□ -0.14
CCM2-216ENST00000488727 PPBPP02775 128 aa14.19□□□□□ -0.14
CCM2-216ENST00000488727 IGLC3P0DOY3 106 aa14.19□□□□□ -0.14
CCM2-216ENST00000488727 MUC21Q5SSG8 566 aa14.19□□□□□ -0.14
CCM2-216ENST00000488727 PET117Q6UWS5 81 aa14.19□□□□□ -0.14
CCM2-216ENST00000488727 LINC00173Q6ZV60 143 aa14.19□□□□□ -0.14
CCM2-216ENST00000488727 RNF185Q96GF1 192 aa14.19□□□□□ -0.14
CCM2-216ENST00000488727 UQCR10Q9UDW1 63 aa14.19□□□□□ -0.14
CCM2-216ENST00000488727 FOXI2Q6ZQN5 318 aa14.18□□□□□ -0.14
CCM2-216ENST00000488727 OR10AG1Q8NH19 301 aa14.18□□□□□ -0.14
CCM2-216ENST00000488727 FAM19A4Q96LR4 140 aa14.18□□□□□ -0.14
CCM2-216ENST00000488727 MAP1LC3CQ9BXW4 147 aa14.18□□□□□ -0.14
CCM2-216ENST00000488727 LAMTOR2Q9Y2Q5 125 aa14.18□□□□□ -0.14
CCM2-216ENST00000488727 SNAI2O43623 268 aa14.18□□□□□ -0.14
CCM2-216ENST00000488727 HLA-DRB4P13762 266 aa14.18□□□□□ -0.14
CCM2-216ENST00000488727 RPL35AP18077 110 aaKnown RBP14.18□□□□□ -0.14
CCM2-216ENST00000488727 CKS2P33552 79 aa14.18□□□□□ -0.14
CCM2-216ENST00000488727 TRPT1Q86TN4 253 aaKnown RBP14.18□□□□□ -0.14
CCM2-216ENST00000488727 STHQ8IWL8 128 aa14.18□□□□□ -0.14
CCM2-216ENST00000488727 HLA-DRB4X5D2U9 266 aa14.18□□□□□ -0.14
CCM2-216ENST00000488727 IGHV4-4A0A075B6R2 117 aa14.17□□□□□ -0.14
CCM2-216ENST00000488727 A0A0J9YX75 114 aa14.17□□□□□ -0.14
CCM2-216ENST00000488727 H3BMM0 161 aa14.17□□□□□ -0.14
CCM2-216ENST00000488727 IFI27P40305 119 aaPredicted RBP14.17□□□□□ -0.14
CCM2-216ENST00000488727 PRR9Q5T870 116 aa14.17□□□□□ -0.14
CCM2-216ENST00000488727 ZFAND2AQ8N6M9 145 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 85.4 ms