RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 LINC00158P58513 81 aa4.1□□□□□ -1.75
SYNE1-220ENST00000471834 CKS1BP61024 79 aa4.1□□□□□ -1.75
SYNE1-220ENST00000471834 MRPL51Q4U2R6 128 aaKnown RBP4.1□□□□□ -1.75
SYNE1-220ENST00000471834 C9orf66Q5T8R8 295 aa4.1□□□□□ -1.75
SYNE1-220ENST00000471834 ZNF479Q96JC4 524 aa4.1□□□□□ -1.75
SYNE1-220ENST00000471834 ZFAND3Q9H8U3 227 aa4.1□□□□□ -1.75
SYNE1-220ENST00000471834 ICE1Q9Y2F5 2266 aa4.1□□□□□ -1.75
SYNE1-220ENST00000471834 DOCK11Q5JSL3 2073 aa4.1□□□□□ -1.75
SYNE1-220ENST00000471834 POLEQ07864 2286 aa4.1□□□□□ -1.75
SYNE1-220ENST00000471834 RHODO00212 210 aa4.1□□□□□ -1.75
SYNE1-220ENST00000471834 FOXI1Q12951 378 aa4.1□□□□□ -1.75
SYNE1-220ENST00000471834 PCP2Q8IVA1 136 aa4.1□□□□□ -1.75
SYNE1-220ENST00000471834 Q8TAT8 98 aa4.1□□□□□ -1.75
SYNE1-220ENST00000471834 PIK3CD-AS1Q5SR53 167 aa4.1□□□□□ -1.75
SYNE1-220ENST00000471834 C8orf86Q6ZUL3 223 aa4.1□□□□□ -1.75
SYNE1-220ENST00000471834 TIMM17AQ99595 171 aa4.1□□□□□ -1.75
SYNE1-220ENST00000471834 F8VRH5 84 aa4.1□□□□□ -1.75
SYNE1-220ENST00000471834 MSMBP08118 114 aa4.1□□□□□ -1.75
SYNE1-220ENST00000471834 CCL18P55774 89 aa4.1□□□□□ -1.75
SYNE1-220ENST00000471834 LYZL1Q6UWQ5 148 aa4.1□□□□□ -1.75
SYNE1-220ENST00000471834 CTSZQ9UBR2 303 aa4.1□□□□□ -1.75
SYNE1-220ENST00000471834 LY6HO94772 140 aa4.09□□□□□ -1.75
SYNE1-220ENST00000471834 LY6G6CO95867 125 aa4.09□□□□□ -1.75
SYNE1-220ENST00000471834 UBE2E2Q96LR5 201 aa4.09□□□□□ -1.75
SYNE1-220ENST00000471834 CARD19Q96LW7 228 aa4.09□□□□□ -1.75
SYNE1-220ENST00000471834 GVINP1Q7Z2Y8 2422 aa4.09□□□□□ -1.75
SYNE1-220ENST00000471834 A0A087WWL8 130 aa4.09□□□□□ -1.75
SYNE1-220ENST00000471834 PRSS29PA6NIE9 313 aa4.09□□□□□ -1.75
SYNE1-220ENST00000471834 P0DMU3 169 aa4.09□□□□□ -1.75
SYNE1-220ENST00000471834 FAM231AP0DMU4 169 aa4.09□□□□□ -1.75
SYNE1-220ENST00000471834 FAM231CP0DMU5 169 aa4.09□□□□□ -1.75
SYNE1-220ENST00000471834 ZNF138P52744 262 aa4.09□□□□□ -1.75
SYNE1-220ENST00000471834 DAD1P61803 113 aa4.09□□□□□ -1.75
SYNE1-220ENST00000471834 PTH2Q96A98 100 aa4.09□□□□□ -1.75
SYNE1-220ENST00000471834 SMAD5-AS1Q9Y6J3 95 aa4.09□□□□□ -1.75
SYNE1-220ENST00000471834 IGHV7-4-1A0A0J9YVY3 117 aa4.09□□□□□ -1.75
SYNE1-220ENST00000471834 FABP5P3A8MUU1 101 aa4.09□□□□□ -1.75
SYNE1-220ENST00000471834 M0R2P5 195 aa4.09□□□□□ -1.75
SYNE1-220ENST00000471834 SLC25A20O43772 301 aa4.09□□□□□ -1.75
SYNE1-220ENST00000471834 C10orf55Q5SWW7 151 aa4.09□□□□□ -1.75
SYNE1-220ENST00000471834 NCOR1O75376 2440 aa4.09□□□□□ -1.75
SYNE1-220ENST00000471834 HIST1H4AP62805 103 aaKnown RBP4.09□□□□□ -1.75
SYNE1-220ENST00000471834 TRBV20-1A0A075B6N2 111 aa4.09□□□□□ -1.76
SYNE1-220ENST00000471834 TRBV7-7A0A0K0K1E9 115 aa4.09□□□□□ -1.76
SYNE1-220ENST00000471834 FAM104AQ969W3 186 aa4.09□□□□□ -1.76
SYNE1-220ENST00000471834 DNAJC13O75165 2243 aa4.09□□□□□ -1.76
SYNE1-220ENST00000471834 RANBP2P49792 3224 aaKnown RBP4.09□□□□□ -1.76
SYNE1-220ENST00000471834 IGIPA6NJ69 53 aa4.09□□□□□ -1.76
SYNE1-220ENST00000471834 BUB1B-PAK6H3BSN5 160 aa4.09□□□□□ -1.76
SYNE1-220ENST00000471834 SOCS3O14543 225 aa4.09□□□□□ -1.76
SYNE1-220ENST00000471834 ZNF80P51504 273 aaPredicted RBP4.09□□□□□ -1.76
SYNE1-220ENST00000471834 MDFICQ9P1T7 246 aa4.09□□□□□ -1.76
SYNE1-220ENST00000471834 C11orf21Q9P2W6 132 aa4.09□□□□□ -1.76
SYNE1-220ENST00000471834 IGHV3-16A0A0C4DH30 117 aa4.08□□□□□ -1.76
SYNE1-220ENST00000471834 TMEM178BH3BS89 294 aa4.08□□□□□ -1.76
SYNE1-220ENST00000471834 C15orf32Q32M92 178 aa4.08□□□□□ -1.76
SYNE1-220ENST00000471834 C12orf74Q32Q52 190 aa4.08□□□□□ -1.76
SYNE1-220ENST00000471834 S100A7L2Q5SY68 101 aa4.08□□□□□ -1.76
SYNE1-220ENST00000471834 FAM19A3Q7Z5A8 133 aa4.08□□□□□ -1.76
SYNE1-220ENST00000471834 TRAV41A0A0B4J266 112 aa4.08□□□□□ -1.76
SYNE1-220ENST00000471834 ZC2HC1BQ5TFG8 222 aa4.08□□□□□ -1.76
SYNE1-220ENST00000471834 CTSGP08311 255 aa4.08□□□□□ -1.76
SYNE1-220ENST00000471834 IGHV1-8P0DP01 117 aa4.08□□□□□ -1.76
SYNE1-220ENST00000471834 FAM110AQ9BQ89 295 aa4.08□□□□□ -1.76
SYNE1-220ENST00000471834 PLNP26678 52 aa4.08□□□□□ -1.76
SYNE1-220ENST00000471834 XGP55808 180 aa4.08□□□□□ -1.76
SYNE1-220ENST00000471834 AJUBAQ96IF1 538 aa4.08□□□□□ -1.76
SYNE1-220ENST00000471834 LITAFQ99732 161 aa4.08□□□□□ -1.76
SYNE1-220ENST00000471834 PCNX2A6NKB5 2137 aa4.08□□□□□ -1.76
SYNE1-220ENST00000471834 ABCA1O95477 2261 aa4.08□□□□□ -1.76
SYNE1-220ENST00000471834 A0A0J9YY99 117 aa4.08□□□□□ -1.76
SYNE1-220ENST00000471834 F5H768 121 aa4.08□□□□□ -1.76
SYNE1-220ENST00000471834 C9orf47Q6ZRZ4 202 aa4.08□□□□□ -1.76
SYNE1-220ENST00000471834 SLC25A29Q8N8R3 303 aa4.08□□□□□ -1.76
SYNE1-220ENST00000471834 SMIM2Q9BVW6 85 aa4.08□□□□□ -1.76
SYNE1-220ENST00000471834 TRBV7-1A0A0A6YYK4 115 aa4.07□□□□□ -1.76
SYNE1-220ENST00000471834 A0A0J9YXY3 114 aa4.07□□□□□ -1.76
SYNE1-220ENST00000471834 SDHAF1A6NFY7 115 aa4.07□□□□□ -1.76
SYNE1-220ENST00000471834 ZFP36P26651 326 aaKnown RBP4.07□□□□□ -1.76
SYNE1-220ENST00000471834 PAPPA-AS1Q5QFB9 102 aa4.07□□□□□ -1.76
SYNE1-220ENST00000471834 ZNF625Q96I27 306 aaPredicted RBP4.07□□□□□ -1.76
SYNE1-220ENST00000471834 PRADC1Q9BSG0 188 aa4.07□□□□□ -1.76
SYNE1-220ENST00000471834 CACNA1DQ01668 2161 aa4.07□□□□□ -1.76
SYNE1-220ENST00000471834 TRGV11A0A075B6L2 103 aa4.07□□□□□ -1.76
SYNE1-220ENST00000471834 TRGV1A0A0A0MS02 117 aa4.07□□□□□ -1.76
SYNE1-220ENST00000471834 EPM2AB3EWF7 344 aa4.07□□□□□ -1.76
SYNE1-220ENST00000471834 AZU1P20160 251 aa4.07□□□□□ -1.76
SYNE1-220ENST00000471834 GAGE2EQ4V326 116 aa4.07□□□□□ -1.76
SYNE1-220ENST00000471834 RASL10AQ92737 203 aa4.07□□□□□ -1.76
SYNE1-220ENST00000471834 GAGE2DQ9UEU5 116 aa4.07□□□□□ -1.76
SYNE1-220ENST00000471834 CYSLTR1Q9Y271 337 aa4.07□□□□□ -1.76
SYNE1-220ENST00000471834 CEND1Q8N111 149 aa4.07□□□□□ -1.76
SYNE1-220ENST00000471834 MAPKAPK5-AS1Q8N8E1 139 aa4.07□□□□□ -1.76
SYNE1-220ENST00000471834 PPDPFLQ8WWR9 84 aa4.07□□□□□ -1.76
SYNE1-220ENST00000471834 SLC50A1Q9BRV3 221 aa4.07□□□□□ -1.76
SYNE1-220ENST00000471834 AGPAT4-IT1Q9H0P7 198 aa4.07□□□□□ -1.76
SYNE1-220ENST00000471834 TRBV27A0A0K0K1C4 114 aa4.07□□□□□ -1.76
SYNE1-220ENST00000471834 MYMXA0A1B0GTQ4 84 aa4.07□□□□□ -1.76
SYNE1-220ENST00000471834 ETDBQ3ZM63 59 aa4.07□□□□□ -1.76
SYNE1-220ENST00000471834 J3QL48 77 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms