RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 A0A1B0GX51 115 aa3.25□□□□□ -1.89
VPS50-210ENST00000471188 TRIAP1O43715 76 aa3.25□□□□□ -1.89
VPS50-210ENST00000471188 CGB3P0DN86 165 aa3.25□□□□□ -1.89
VPS50-210ENST00000471188 CGB7P0DN87 165 aa3.25□□□□□ -1.89
VPS50-210ENST00000471188 IGHV1-2P23083 117 aa3.25□□□□□ -1.89
VPS50-210ENST00000471188 SLC25A29Q8N8R3 303 aa3.25□□□□□ -1.89
VPS50-210ENST00000471188 CLEC2BQ92478 149 aa3.25□□□□□ -1.89
VPS50-210ENST00000471188 DUX5Q96PT3 197 aa3.25□□□□□ -1.89
VPS50-210ENST00000471188 TRBV7-7A0A0K0K1E9 115 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 J3QQQ9 107 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 IGKV1-17P01599 117 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 COX6B1P14854 86 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 CNTFRP26992 372 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 SUMO2P61956 95 aaKnown RBP3.24□□□□□ -1.89
VPS50-210ENST00000471188 PRB3Q04118 309 aaPredicted RBP3.24□□□□□ -1.89
VPS50-210ENST00000471188 LY6DQ14210 128 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 CACNA1EQ15878 2313 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 NSUN5P1Q3KNT7 163 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 TMEM240Q5SV17 173 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 MALRD1Q5VYJ5 2156 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 NRACQ8N912 160 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 METTL26Q96S19 204 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 TTTY12Q9BZ98 90 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 ABCA4P78363 2273 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.24□□□□□ -1.89
VPS50-210ENST00000471188 TRAV17A0A0B4J275 112 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 LINC01546A6NGU7 62 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 H3BRN7 92 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 H7C423 109 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 IGHG4P01861 327 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 P0DMU3 169 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 FAM231AP0DMU4 169 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 FAM231CP0DMU5 169 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 COX7CP15954 63 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 S100A4P26447 101 aaKnown RBP3.24□□□□□ -1.89
VPS50-210ENST00000471188 TSPEAR-AS2P59090 65 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 Q0VFX4 171 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 ZNF833PQ6ZTB9 187 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 RNF152Q8N8N0 203 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 CFHR4Q92496 578 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 TOMM6Q96B49 74 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 RPL39LQ96EH5 51 aaKnown RBP3.24□□□□□ -1.89
VPS50-210ENST00000471188 KRTAP4-9Q9BYQ8 210 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.24□□□□□ -1.89
VPS50-210ENST00000471188 PCNX1Q96RV3 2341 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 C5orf67F2Z3F1 127 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 ZNF883P0CG24 379 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 ZNF491Q8N8L2 437 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 TMEM263Q8WUH6 116 aaKnown RBP3.24□□□□□ -1.89
VPS50-210ENST00000471188 PKIGQ9Y2B9 76 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 ZFHX4Q86UP3 3567 aa3.24□□□□□ -1.89
VPS50-210ENST00000471188 KALRNO60229 2985 aa3.23□□□□□ -1.89
VPS50-210ENST00000471188 TRAV13-1A0A0B4J241 112 aa3.23□□□□□ -1.89
VPS50-210ENST00000471188 MBD3L4A6NDZ8 208 aaPredicted RBP3.23□□□□□ -1.89
VPS50-210ENST00000471188 MBD3L3A6NE82 208 aaPredicted RBP3.23□□□□□ -1.89
VPS50-210ENST00000471188 MBD3L5A6NJ08 208 aaPredicted RBP3.23□□□□□ -1.89
VPS50-210ENST00000471188 H3BT86 120 aa3.23□□□□□ -1.89
VPS50-210ENST00000471188 IGLV3-19P01714 112 aa3.23□□□□□ -1.89
VPS50-210ENST00000471188 IGHV3-23P01764 117 aa3.23□□□□□ -1.89
VPS50-210ENST00000471188 UBE2E1P51965 193 aa3.23□□□□□ -1.89
VPS50-210ENST00000471188 PAPPA-AS1Q5QFB9 102 aa3.23□□□□□ -1.89
VPS50-210ENST00000471188 POM121L12Q8N7R1 296 aa3.23□□□□□ -1.89
VPS50-210ENST00000471188 RNF7Q9UBF6 113 aa3.23□□□□□ -1.89
VPS50-210ENST00000471188 APC2O95996 2303 aa3.23□□□□□ -1.89
VPS50-210ENST00000471188 OVOL1O14753 267 aa3.23□□□□□ -1.89
VPS50-210ENST00000471188 PDE6HQ13956 83 aa3.23□□□□□ -1.89
VPS50-210ENST00000471188 EBI3Q14213 229 aa3.23□□□□□ -1.89
VPS50-210ENST00000471188 RHOHQ15669 191 aa3.23□□□□□ -1.89
VPS50-210ENST00000471188 LINC00477Q96M19 166 aa3.23□□□□□ -1.89
VPS50-210ENST00000471188 IMUPQ9GZP8 106 aa3.23□□□□□ -1.89
VPS50-210ENST00000471188 TP53TG1Q9Y2A0 90 aa3.23□□□□□ -1.89
VPS50-210ENST00000471188 CACNA1HO95180 2353 aa3.23□□□□□ -1.89
VPS50-210ENST00000471188 SPTBN1Q01082 2364 aaKnown RBP3.23□□□□□ -1.89
VPS50-210ENST00000471188 CNOT1A5YKK6 2376 aaKnown RBP3.22□□□□□ -1.89
VPS50-210ENST00000471188 IGHV3OR16-13A0A075B7E8 117 aa3.22□□□□□ -1.89
VPS50-210ENST00000471188 IGHV3-74A0A0B4J1X5 117 aa3.22□□□□□ -1.89
VPS50-210ENST00000471188 A0A0B4J2C4 111 aa3.22□□□□□ -1.89
VPS50-210ENST00000471188 IGKV3D-20A0A0C4DH25 116 aa3.22□□□□□ -1.89
VPS50-210ENST00000471188 FAM240AA0A1B0GVK7 77 aa3.22□□□□□ -1.89
VPS50-210ENST00000471188 IGLV2-23P01705 113 aa3.22□□□□□ -1.89
VPS50-210ENST00000471188 RPS28P62857 69 aaKnown RBP3.22□□□□□ -1.89
VPS50-210ENST00000471188 IL11RAQ14626 422 aa3.22□□□□□ -1.89
VPS50-210ENST00000471188 TEX36Q5VZQ5 186 aa3.22□□□□□ -1.89
VPS50-210ENST00000471188 LINC00643Q86TS7 51 aa3.22□□□□□ -1.89
VPS50-210ENST00000471188 DYNAPQ8N1N2 210 aa3.22□□□□□ -1.89
VPS50-210ENST00000471188 RNF182Q8N6D2 247 aa3.22□□□□□ -1.89
VPS50-210ENST00000471188 CNFNQ9BYD5 112 aa3.22□□□□□ -1.89
VPS50-210ENST00000471188 ICOSQ9Y6W8 199 aa3.22□□□□□ -1.89
VPS50-210ENST00000471188 IGHV3-66A0A0C4DH42 116 aa3.22□□□□□ -1.89
VPS50-210ENST00000471188 RPL39P62891 51 aaKnown RBP3.22□□□□□ -1.89
VPS50-210ENST00000471188 TNFAIP6P98066 277 aaPredicted RBP3.22□□□□□ -1.89
VPS50-210ENST00000471188 PVRIGQ6DKI7 326 aa3.22□□□□□ -1.89
VPS50-210ENST00000471188 Q6ZSV7 163 aa3.22□□□□□ -1.89
VPS50-210ENST00000471188 MRAPQ8TCY5 172 aa3.22□□□□□ -1.89
VPS50-210ENST00000471188 C10orf105Q8TEF2 133 aa3.22□□□□□ -1.89
VPS50-210ENST00000471188 DPH3Q96FX2 82 aa3.22□□□□□ -1.89
VPS50-210ENST00000471188 GAFA1Q96PS6 74 aa3.22□□□□□ -1.89
VPS50-210ENST00000471188 AKAP6Q13023 2319 aa3.22□□□□□ -1.89
VPS50-210ENST00000471188 PRRC2AP48634 2157 aaKnown RBP3.22□□□□□ -1.89
VPS50-210ENST00000471188 DOPEY2Q9Y3R5 2298 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms