RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 C2orf16Q68DN1 1984 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 IFITM10A6NMD0 228 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 NME4O00746 187 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 HLA-DRB4P13762 266 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 SPI1P17947 270 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 REG3AQ06141 175 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 LINC00299Q6ZSB3 139 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 ORAOV1Q8WV07 137 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 SOSTQ9BQB4 213 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 VPS25Q9BRG1 176 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 SNHG12Q9BXW3 62 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 FRRS1LQ9P0K9 344 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 MLXQ9UH92 298 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 HLA-DRB4X5D2U9 266 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 C7orf66A4D0T2 115 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 H7C2G1 150 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 VCYO14598 125 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 CCSO14618 274 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 DIRAS1O95057 198 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 CELP19835 753 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 TAS2R31P59538 309 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 KIAA0040Q15053 153 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 TRIQKQ629K1 86 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 VKORC1L1Q8N0U8 176 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 ZFP82Q8N141 532 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 DEFB105AQ8NG35 78 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 PRELID3AQ96N28 172 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 EFCAB10A6NFE3 127 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 BBIP1A8MTZ0 92 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 SELENOFO60613 162 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 C1QBP02746 253 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 SEC11AP67812 179 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 CTF1Q16619 201 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 AKR1C8PQ5T2L2 129 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 CASC2Q6XLA1 102 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 DAZ4Q86SG3 579 aaKnown RBP1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 RNF148Q8N7C7 305 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 OR1P1Q8NH06 330 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 YPEL2Q96QA6 119 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 KRTAP4-2Q9BYR5 136 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 DAZ3Q9NR90 486 aaKnown RBP1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 IGLV4-69A0A075B6H9 119 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 C9orf92A6NGG3 77 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 LINC00587B1AMM8 73 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 H3BTX0 84 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 TRGC2P03986 189 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 OR5AL1P0C617 328 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 IAPPP10997 89 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 SDC2P34741 201 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 SRSF9Q13242 221 aaKnown RBP eCLIP1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 C1orf146Q5VVC0 180 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 Q6ZTI0 123 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 WFDC10BQ8IUB3 73 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 LINC00269Q8N2A0 174 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 FAAP24Q9BTP7 215 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 RBM38Q9H0Z9 239 aaKnown RBP1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 A0A0U1RQV5 110 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 SPRR5A0A1B0GTR4 108 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 PRSS47A8MTI9 375 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 GATCO43716 136 aaKnown RBP1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 RAB3DO95716 219 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 SCGB1A1P11684 91 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 KRTAP10-3P60369 221 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 LAGE3Q14657 143 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 PRSS54Q6PEW0 395 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 Q6ZS49 121 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 Q86TA4 180 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 OR10R2Q8NGX6 335 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 OTOSQ8NHW6 89 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 ZNF2Q9BSG1 426 aaPredicted RBP1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 CHCHD7Q9BUK0 85 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 PROK2Q9HC23 129 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 GNG13Q9P2W3 67 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 DOCK5Q9H7D0 1870 aa1.88□□□□□ -2.11
CCDC88A-205ENST00000426576 C1orf196B1AJZ1 125 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 NTF3P20783 257 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 ZNF726P1Q15940 193 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 PIGYQ3MUY2 71 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 SUMO4Q6EEV6 95 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 TMUB2Q71RG4 321 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 CEACAM19Q7Z692 300 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 PHYHIPQ92561 330 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 FXYD6Q9H0Q3 95 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 KMT2AQ03164 3969 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 TRBV7-9A0A0J9YWB2 115 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 DIRC3C9JPN6 131 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 HMGN4O00479 90 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 MRPS25P82663 173 aaKnown RBP1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 PRNTQ86SH4 94 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 KRTAP9-3Q9BYQ3 159 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 ANK1P16157 1881 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 LRBAP50851 2863 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 FAM90A10PA6NDY2 464 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 FAM90A7PA6NKC0 464 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 K7EQD1 137 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 ERC2-IT1O76042 136 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 ZNF705DP0CH99 300 aaPredicted RBP1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 ZNF705BP0CI00 300 aaPredicted RBP1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 PTPRDP23468 1912 aa1.87□□□□□ -2.11
CCDC88A-205ENST00000426576 RPL34P49207 117 aaKnown RBP1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms