RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 CST6Q15828 149 aa1.97□□□□□ -2.09
LINC01040-201ENST00000425048 DEFB121Q5J5C9 76 aa1.97□□□□□ -2.09
LINC01040-201ENST00000425048 CEMP1Q6PRD7 247 aaPredicted RBP1.97□□□□□ -2.09
LINC01040-201ENST00000425048 GOLT1AQ6ZVE7 132 aa1.97□□□□□ -2.09
LINC01040-201ENST00000425048 C6orf201Q7Z4U5 140 aa1.97□□□□□ -2.09
LINC01040-201ENST00000425048 ATP5L2Q7Z4Y8 100 aa1.97□□□□□ -2.09
LINC01040-201ENST00000425048 APRG1Q8IVJ8 170 aa1.97□□□□□ -2.09
LINC01040-201ENST00000425048 PLEKHB2Q96CS7 222 aa1.97□□□□□ -2.09
LINC01040-201ENST00000425048 TIMD4Q96H15 378 aa1.97□□□□□ -2.09
LINC01040-201ENST00000425048 SPACA5Q96QH8 159 aa1.97□□□□□ -2.09
LINC01040-201ENST00000425048 UPK3BQ9BT76 320 aa1.97□□□□□ -2.09
LINC01040-201ENST00000425048 NPCDR1Q9BY65 106 aa1.97□□□□□ -2.09
LINC01040-201ENST00000425048 TTTY13Q9BZ97 58 aa1.97□□□□□ -2.09
LINC01040-201ENST00000425048 IMUPQ9GZP8 106 aa1.97□□□□□ -2.09
LINC01040-201ENST00000425048 DIDO1Q9BTC0 2240 aaKnown RBP1.97□□□□□ -2.09
LINC01040-201ENST00000425048 ESPL1Q14674 2120 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 TRAV8-1A0A0A6YYK1 113 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 TRAV2A0A0B4J234 112 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 TRAV8-2A0A0B4J237 113 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 TRAV8-4A0A0B4J246 113 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 IGKV1D-13A0A0B4J2D9 117 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 MYMXA0A1B0GTQ4 84 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 ENSAO43768 121 aaKnown RBP1.96□□□□□ -2.1
LINC01040-201ENST00000425048 NPYP01303 97 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 IGKV1-5P01602 117 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 IGLV3-1P01715 115 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 IGKCP01834 107 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 ATP5G1P05496 136 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 IFI6P09912 130 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 IGKV1-13P0DP09 117 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 CD24P25063 80 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 PSMB8P28062 276 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 MYCNOSP40205 109 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 PSMB2P49721 201 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 UBE2D1P51668 147 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 ZNF138P52744 262 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 HIST1H4AP62805 103 aaKnown RBP1.96□□□□□ -2.1
LINC01040-201ENST00000425048 RPL18Q07020 188 aaKnown RBP1.96□□□□□ -2.1
LINC01040-201ENST00000425048 PMVKQ15126 192 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 TMEM52BQ4KMG9 183 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 PSMG4Q5JS54 123 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 SLC25A48Q6ZT89 311 aaKnown RBP1.96□□□□□ -2.1
LINC01040-201ENST00000425048 RPS19BP1Q86WX3 136 aaKnown RBP1.96□□□□□ -2.1
LINC01040-201ENST00000425048 AMN1Q8IY45 258 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 LINC01561Q8N1V8 128 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 ZCCHC24Q8N2G6 241 aaKnown RBP1.96□□□□□ -2.1
LINC01040-201ENST00000425048 SLC25A45Q8N413 288 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 DSCR8Q96T75 97 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 SHANK2-AS3Q9BTD1 123 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 SPANXDQ9BXN6 97 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 AGPAT4-IT1Q9H0P7 198 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 CABIN1Q9Y6J0 2220 aa1.96□□□□□ -2.1
LINC01040-201ENST00000425048 SPAG17Q6Q759 2223 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 HMCN1Q96RW7 5635 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 DSCAMO60469 2012 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 IGHV3OR15-7A0A075B7D8 119 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 TMSB15BA0A087X1C1 80 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 FAM240AA0A1B0GVK7 77 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 hADV29S1A0JD25 119 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 C5orf63A6NC05 138 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 LGALS9O00182 355 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 TRACP01848 142 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 LGALS1P09382 135 aaKnown RBP1.95□□□□□ -2.1
LINC01040-201ENST00000425048 SCGB1C2P0DMR2 95 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 P0DMU3 169 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 FAM231AP0DMU4 169 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 FAM231CP0DMU5 169 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 CTLA4P16410 223 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 HMGA1P17096 107 aaKnown RBP1.95□□□□□ -2.1
LINC01040-201ENST00000425048 FKBP2P26885 142 aaKnown RBP1.95□□□□□ -2.1
LINC01040-201ENST00000425048 SPINT3P49223 89 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 SSR4P51571 173 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 CACNG7P62955 275 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 HBBP68871 147 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 SRYQ05066 204 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 PRDX1Q06830 199 aaKnown RBP1.95□□□□□ -2.1
LINC01040-201ENST00000425048 LOXL1Q08397 574 aaPredicted RBP1.95□□□□□ -2.1
LINC01040-201ENST00000425048 ZNF816Q0VGE8 651 aaPredicted RBP1.95□□□□□ -2.1
LINC01040-201ENST00000425048 SPANXN5Q5MJ07 72 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 CASC10Q5T4H9 136 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 SDIM1Q6ZPB5 146 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 DGAT2L6Q6ZPD8 337 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 ZNF818PQ6ZRF7 136 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 AAED1Q7RTV5 226 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 C5orf38Q86SI9 138 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 C1orf158Q8N1D5 194 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 RPRMLQ8N4K4 120 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 LINC00311Q8N616 119 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 CCL28Q9NRJ3 127 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 RPUSD1Q9UJJ7 312 aaKnown RBP1.95□□□□□ -2.1
LINC01040-201ENST00000425048 EPDR1Q9UM22 224 aa1.95□□□□□ -2.1
LINC01040-201ENST00000425048 INTS1Q8N201 2190 aaKnown RBP1.94□□□□□ -2.1
LINC01040-201ENST00000425048 MED12Q93074 2177 aa1.94□□□□□ -2.1
LINC01040-201ENST00000425048 IGKV3D-11A0A0A0MRZ8 115 aa1.94□□□□□ -2.1
LINC01040-201ENST00000425048 TRAV17A0A0B4J275 112 aa1.94□□□□□ -2.1
LINC01040-201ENST00000425048 LINC01546A6NGU7 62 aa1.94□□□□□ -2.1
LINC01040-201ENST00000425048 LINC01549A6NIU2 74 aa1.94□□□□□ -2.1
LINC01040-201ENST00000425048 HIGD1CA8MV81 97 aa1.94□□□□□ -2.1
LINC01040-201ENST00000425048 INS-IGF2F8WCM5 200 aa1.94□□□□□ -2.1
LINC01040-201ENST00000425048 MRPS12O15235 138 aaKnown RBP1.94□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms