RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 GAGE1Q13065 139 aa7.72□□□□□ -1.17
USP4-204ENST00000416417 GAGE4Q13068 117 aa7.72□□□□□ -1.17
USP4-204ENST00000416417 GAGE5Q13069 117 aa7.72□□□□□ -1.17
USP4-204ENST00000416417 RHOHQ15669 191 aa7.72□□□□□ -1.17
USP4-204ENST00000416417 GAGE13Q4V321 117 aa7.72□□□□□ -1.17
USP4-204ENST00000416417 SH2D6Q7Z4S9 175 aa7.72□□□□□ -1.17
USP4-204ENST00000416417 Q8N814 137 aa7.72□□□□□ -1.17
USP4-204ENST00000416417 EPDR1Q9UM22 224 aa7.72□□□□□ -1.17
USP4-204ENST00000416417 SRRM2Q9UQ35 2752 aaKnown RBP7.71□□□□□ -1.17
USP4-204ENST00000416417 TRBV6-4A0A1B0GX49 114 aa7.71□□□□□ -1.18
USP4-204ENST00000416417 SMUG1Q53HV7 270 aa7.71□□□□□ -1.18
USP4-204ENST00000416417 LELP1Q5T871 98 aa7.71□□□□□ -1.18
USP4-204ENST00000416417 ATP6V0E2Q8NHE4 81 aa7.71□□□□□ -1.18
USP4-204ENST00000416417 SUN5Q8TC36 379 aa7.71□□□□□ -1.18
USP4-204ENST00000416417 MYCBP2O75592 4640 aa7.7□□□□□ -1.18
USP4-204ENST00000416417 IGKV3D-20A0A0C4DH25 116 aa7.7□□□□□ -1.18
USP4-204ENST00000416417 UBE2G2P60604 165 aa7.7□□□□□ -1.18
USP4-204ENST00000416417 OR2T35Q8NGX2 323 aa7.7□□□□□ -1.18
USP4-204ENST00000416417 OR2G3Q8NGZ4 309 aa7.7□□□□□ -1.18
USP4-204ENST00000416417 SAMD10Q9BYL1 202 aa7.7□□□□□ -1.18
USP4-204ENST00000416417 GTSF1LQ9H1H1 148 aa7.7□□□□□ -1.18
USP4-204ENST00000416417 SERTM2A0A1B0GWG4 89 aa7.69□□□□□ -1.18
USP4-204ENST00000416417 K7EQM0 130 aa7.69□□□□□ -1.18
USP4-204ENST00000416417 ZNF726P1Q15940 193 aa7.69□□□□□ -1.18
USP4-204ENST00000416417 LGALSLQ3ZCW2 172 aaPredicted RBP7.69□□□□□ -1.18
USP4-204ENST00000416417 ZFP69Q49AA0 526 aa7.69□□□□□ -1.18
USP4-204ENST00000416417 DAZ4Q86SG3 579 aaKnown RBP7.69□□□□□ -1.18
USP4-204ENST00000416417 C14orf178Q8N769 122 aaPredicted RBP7.69□□□□□ -1.18
USP4-204ENST00000416417 CYB561D1Q8N8Q1 229 aa7.69□□□□□ -1.18
USP4-204ENST00000416417 PSMG3Q9BT73 122 aaPredicted RBP7.69□□□□□ -1.18
USP4-204ENST00000416417 PARLQ9H300 379 aa7.69□□□□□ -1.18
USP4-204ENST00000416417 DAZ3Q9NR90 486 aaKnown RBP7.69□□□□□ -1.18
USP4-204ENST00000416417 FAM229AH3BQW9 127 aa7.68□□□□□ -1.18
USP4-204ENST00000416417 CXorf1O96002 111 aa7.68□□□□□ -1.18
USP4-204ENST00000416417 S100A4P26447 101 aaKnown RBP7.68□□□□□ -1.18
USP4-204ENST00000416417 LINC01620Q4KN68 170 aa7.68□□□□□ -1.18
USP4-204ENST00000416417 RPL7L1Q6DKI1 246 aaKnown RBP7.68□□□□□ -1.18
USP4-204ENST00000416417 DNAJC30Q96LL9 226 aa7.68□□□□□ -1.18
USP4-204ENST00000416417 AQP10Q96PS8 301 aa7.68□□□□□ -1.18
USP4-204ENST00000416417 ACTR3CQ9C0K3 210 aaPredicted RBP7.68□□□□□ -1.18
USP4-204ENST00000416417 ARL2-SNX15V9GYD0 113 aa7.68□□□□□ -1.18
USP4-204ENST00000416417 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.68□□□□□ -1.18
USP4-204ENST00000416417 GRIFINA4D1Z8 144 aa7.68□□□□□ -1.18
USP4-204ENST00000416417 M0R036 132 aa7.68□□□□□ -1.18
USP4-204ENST00000416417 MGST1P10620 155 aaKnown RBP7.68□□□□□ -1.18
USP4-204ENST00000416417 FGF8P55075 233 aaPredicted RBP7.68□□□□□ -1.18
USP4-204ENST00000416417 NTN5Q8WTR8 489 aaPredicted RBP7.68□□□□□ -1.18
USP4-204ENST00000416417 TMEM70Q9BUB7 260 aa7.68□□□□□ -1.18
USP4-204ENST00000416417 MED28Q9H204 178 aa7.68□□□□□ -1.18
USP4-204ENST00000416417 TMEM167BQ9NRX6 74 aa7.68□□□□□ -1.18
USP4-204ENST00000416417 DNAH8Q96JB1 4490 aa7.67□□□□□ -1.18
USP4-204ENST00000416417 H3BVH4 76 aa7.67□□□□□ -1.18
USP4-204ENST00000416417 IFNA7P01567 189 aa7.67□□□□□ -1.18
USP4-204ENST00000416417 MBP02144 154 aa7.67□□□□□ -1.18
USP4-204ENST00000416417 ASIPP42127 132 aa7.67□□□□□ -1.18
USP4-204ENST00000416417 SAPCD1Q5SSQ6 148 aa7.67□□□□□ -1.18
USP4-204ENST00000416417 DMRTA1Q5VZB9 504 aa7.67□□□□□ -1.18
USP4-204ENST00000416417 PTH2Q96A98 100 aa7.67□□□□□ -1.18
USP4-204ENST00000416417 FXYD6-FXYD2A0A087WZ82 144 aa7.66□□□□□ -1.18
USP4-204ENST00000416417 RNF222A6NCQ9 220 aa7.66□□□□□ -1.18
USP4-204ENST00000416417 B4DEV8 164 aa7.66□□□□□ -1.18
USP4-204ENST00000416417 CIDEAO60543 219 aa7.66□□□□□ -1.18
USP4-204ENST00000416417 LINC00694P0DN24 101 aa7.66□□□□□ -1.18
USP4-204ENST00000416417 CRIP1P50238 77 aa7.66□□□□□ -1.18
USP4-204ENST00000416417 SERF2P84101 59 aa7.66□□□□□ -1.18
USP4-204ENST00000416417 UFSP1Q6NVU6 142 aa7.66□□□□□ -1.18
USP4-204ENST00000416417 Q86TA4 180 aa7.66□□□□□ -1.18
USP4-204ENST00000416417 BAALCQ8WXS3 180 aa7.66□□□□□ -1.18
USP4-204ENST00000416417 TNFSF18Q9UNG2 199 aa7.66□□□□□ -1.18
USP4-204ENST00000416417 DMBT1Q9UGM3 2413 aaPredicted RBP7.66□□□□□ -1.18
USP4-204ENST00000416417 FLG2Q5D862 2391 aaPredicted RBP7.66□□□□□ -1.18
USP4-204ENST00000416417 A0A087WWL8 130 aa7.65□□□□□ -1.18
USP4-204ENST00000416417 TMSB15BA0A087X1C1 80 aa7.65□□□□□ -1.18
USP4-204ENST00000416417 A0A1W2PRE2 83 aa7.65□□□□□ -1.18
USP4-204ENST00000416417 FABP5P3A8MUU1 101 aa7.65□□□□□ -1.18
USP4-204ENST00000416417 PEX7O00628 323 aa7.65□□□□□ -1.18
USP4-204ENST00000416417 FAM74A4Q5TZK3 123 aa7.65□□□□□ -1.18
USP4-204ENST00000416417 ZC2HC1AQ96GY0 325 aa7.65□□□□□ -1.18
USP4-204ENST00000416417 A8MWV9 139 aa7.64□□□□□ -1.19
USP4-204ENST00000416417 SH2D1AO60880 128 aa7.64□□□□□ -1.19
USP4-204ENST00000416417 ARMS2P0C7Q2 107 aa7.64□□□□□ -1.19
USP4-204ENST00000416417 ZFP2Q6ZN57 461 aa7.64□□□□□ -1.19
USP4-204ENST00000416417 TM2D2Q9BX73 214 aa7.64□□□□□ -1.19
USP4-204ENST00000416417 CTXND1A0A1B0GTU2 59 aa7.63□□□□□ -1.19
USP4-204ENST00000416417 FAM74A7A6NL05 159 aa7.63□□□□□ -1.19
USP4-204ENST00000416417 KRBOX1C9JBD0 128 aa7.63□□□□□ -1.19
USP4-204ENST00000416417 LAGE3Q14657 143 aa7.63□□□□□ -1.19
USP4-204ENST00000416417 M0R381 172 aa7.62□□□□□ -1.19
USP4-204ENST00000416417 GIPP09681 153 aaPredicted RBP7.62□□□□□ -1.19
USP4-204ENST00000416417 INO80EQ8NBZ0 244 aaPredicted RBP7.62□□□□□ -1.19
USP4-204ENST00000416417 IL36BQ9NZH7 164 aa7.62□□□□□ -1.19
USP4-204ENST00000416417 BORCS7-ASMTA0A0B4J1R7 106 aa7.62□□□□□ -1.19
USP4-204ENST00000416417 PTTG1O95997 202 aa7.62□□□□□ -1.19
USP4-204ENST00000416417 LINC00528Q8N1L1 170 aa7.62□□□□□ -1.19
USP4-204ENST00000416417 OR11H4Q8NGC9 324 aa7.62□□□□□ -1.19
USP4-204ENST00000416417 KLK12Q9UKR0 248 aa7.62□□□□□ -1.19
USP4-204ENST00000416417 IGKV2D-24A0A075B6R9 120 aa7.61□□□□□ -1.19
USP4-204ENST00000416417 TRAV8-3A0A0A6YYJ7 113 aa7.61□□□□□ -1.19
USP4-204ENST00000416417 AKR1C8PQ5T2L2 129 aa7.61□□□□□ -1.19
USP4-204ENST00000416417 Q6ZSA8 131 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms