RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 PROK1P58294 105 aa11.18□□□□□ -0.62
USP4-203ENST00000415188 APRG1Q8IVJ8 170 aa11.18□□□□□ -0.62
USP4-203ENST00000415188 OR1N2Q8NGR9 330 aa11.18□□□□□ -0.62
USP4-203ENST00000415188 KLK15Q9H2R5 256 aa11.18□□□□□ -0.62
USP4-203ENST00000415188 DAZ1Q9NQZ3 744 aaKnown RBP11.18□□□□□ -0.62
USP4-203ENST00000415188 MSRB1Q9NZV6 116 aa11.18□□□□□ -0.62
USP4-203ENST00000415188 VWFP04275 2813 aa11.17□□□□□ -0.62
USP4-203ENST00000415188 SMKR1H3BMG3 65 aa11.17□□□□□ -0.62
USP4-203ENST00000415188 TNFRSF6BO95407 300 aa11.17□□□□□ -0.62
USP4-203ENST00000415188 IGHV3-11P01762 117 aa11.17□□□□□ -0.62
USP4-203ENST00000415188 ZNF25P17030 456 aaPredicted RBP11.17□□□□□ -0.62
USP4-203ENST00000415188 FAM106AQ4KMX7 169 aa11.17□□□□□ -0.62
USP4-203ENST00000415188 IFI27L1Q96BM0 104 aa11.17□□□□□ -0.62
USP4-203ENST00000415188 FAM19A4Q96LR4 140 aa11.17□□□□□ -0.62
USP4-203ENST00000415188 PEF1Q9UBV8 284 aaKnown RBP11.17□□□□□ -0.62
USP4-203ENST00000415188 SMPXQ9UHP9 88 aa11.17□□□□□ -0.62
USP4-203ENST00000415188 NCR2O95944 276 aa11.16□□□□□ -0.62
USP4-203ENST00000415188 FCER1GP30273 86 aa11.16□□□□□ -0.62
USP4-203ENST00000415188 FOXE3Q13461 319 aa11.16□□□□□ -0.62
USP4-203ENST00000415188 ZFAND2AQ8N6M9 145 aa11.16□□□□□ -0.62
USP4-203ENST00000415188 Q8N8P6 123 aa11.16□□□□□ -0.62
USP4-203ENST00000415188 OR8A1Q8NGG7 326 aa11.16□□□□□ -0.62
USP4-203ENST00000415188 RHPN1-AS1Q9BWJ2 59 aa11.16□□□□□ -0.62
USP4-203ENST00000415188 C16orf95Q9H693 158 aa11.16□□□□□ -0.62
USP4-203ENST00000415188 UFC1Q9Y3C8 167 aa11.16□□□□□ -0.62
USP4-203ENST00000415188 GOLT1BQ9Y3E0 138 aa11.16□□□□□ -0.62
USP4-203ENST00000415188 TIMM8BQ9Y5J9 83 aaPredicted RBP11.16□□□□□ -0.62
USP4-203ENST00000415188 DLEU1O43261 78 aa11.15□□□□□ -0.62
USP4-203ENST00000415188 ID1P41134 155 aa11.15□□□□□ -0.62
USP4-203ENST00000415188 STPG4Q8N801 248 aa11.15□□□□□ -0.62
USP4-203ENST00000415188 MRAP2Q96G30 205 aa11.15□□□□□ -0.62
USP4-203ENST00000415188 H0Y8G0 127 aa11.14□□□□□ -0.63
USP4-203ENST00000415188 COX8AP10176 69 aa11.14□□□□□ -0.63
USP4-203ENST00000415188 PSMB8P28062 276 aa11.14□□□□□ -0.63
USP4-203ENST00000415188 SPANXN1Q5VSR9 72 aa11.14□□□□□ -0.63
USP4-203ENST00000415188 OR2K2Q8NGT1 345 aa11.14□□□□□ -0.63
USP4-203ENST00000415188 TMEM208Q9BTX3 173 aa11.14□□□□□ -0.63
USP4-203ENST00000415188 HINT1P49773 126 aaPredicted RBP11.13□□□□□ -0.63
USP4-203ENST00000415188 PRR9Q5T870 116 aa11.13□□□□□ -0.63
USP4-203ENST00000415188 Q6ZS46 218 aa11.13□□□□□ -0.63
USP4-203ENST00000415188 G0S2P27469 103 aa11.12□□□□□ -0.63
USP4-203ENST00000415188 ASIPP42127 132 aa11.12□□□□□ -0.63
USP4-203ENST00000415188 HIST2H2BDQ6DRA6 164 aa11.12□□□□□ -0.63
USP4-203ENST00000415188 ORAOV1Q8WV07 137 aa11.12□□□□□ -0.63
USP4-203ENST00000415188 NOTCH1P46531 2555 aa11.12□□□□□ -0.63
USP4-203ENST00000415188 IGLV2-18A0A075B6J9 118 aa11.12□□□□□ -0.63
USP4-203ENST00000415188 H3BVH4 76 aa11.12□□□□□ -0.63
USP4-203ENST00000415188 RPL11P62913 178 aaKnown RBP11.12□□□□□ -0.63
USP4-203ENST00000415188 NRACQ8N912 160 aa11.12□□□□□ -0.63
USP4-203ENST00000415188 PRKDCP78527 4128 aaKnown RBP11.11□□□□□ -0.63
USP4-203ENST00000415188 ATP5LO75964 103 aa11.11□□□□□ -0.63
USP4-203ENST00000415188 EVI2AP22794 236 aa11.11□□□□□ -0.63
USP4-203ENST00000415188 LEPP41159 167 aa11.11□□□□□ -0.63
USP4-203ENST00000415188 TM4SF20Q53R12 229 aa11.11□□□□□ -0.63
USP4-203ENST00000415188 ODF3Q96PU9 254 aa11.11□□□□□ -0.63
USP4-203ENST00000415188 K7EMI3 77 aa11.1□□□□□ -0.63
USP4-203ENST00000415188 TFPI2P48307 235 aa11.1□□□□□ -0.63
USP4-203ENST00000415188 MCRIP2Q9BUT9 160 aaKnown RBP11.1□□□□□ -0.63
USP4-203ENST00000415188 M0R381 172 aa11.09□□□□□ -0.63
USP4-203ENST00000415188 NXPH4O95158 308 aa11.09□□□□□ -0.63
USP4-203ENST00000415188 PPP1R17O96001 155 aa11.09□□□□□ -0.63
USP4-203ENST00000415188 ELANEP08246 267 aa11.09□□□□□ -0.63
USP4-203ENST00000415188 S100A4P26447 101 aaKnown RBP11.09□□□□□ -0.63
USP4-203ENST00000415188 LAGE3Q14657 143 aa11.09□□□□□ -0.63
USP4-203ENST00000415188 C11orf44Q8N8P7 122 aa11.09□□□□□ -0.63
USP4-203ENST00000415188 DPH3P1Q9H4G8 78 aa11.09□□□□□ -0.63
USP4-203ENST00000415188 KLLNB2CW77 178 aa11.08□□□□□ -0.64
USP4-203ENST00000415188 LGALS9O00182 355 aa11.08□□□□□ -0.64
USP4-203ENST00000415188 SIVA1O15304 175 aa11.08□□□□□ -0.64
USP4-203ENST00000415188 KIR3DS1Q14943 382 aa11.08□□□□□ -0.64
USP4-203ENST00000415188 ANXA2RQ3ZCQ2 193 aa11.08□□□□□ -0.64
USP4-203ENST00000415188 LCNL1Q6ZST4 164 aa11.08□□□□□ -0.64
USP4-203ENST00000415188 MYOZ3Q8TDC0 251 aa11.08□□□□□ -0.64
USP4-203ENST00000415188 C20orf78Q9BR46 151 aa11.08□□□□□ -0.64
USP4-203ENST00000415188 GAS8-AS1O95177 125 aa11.07□□□□□ -0.64
USP4-203ENST00000415188 LGALS1P09382 135 aaKnown RBP11.07□□□□□ -0.64
USP4-203ENST00000415188 BVES-AS1Q5T3Y7 98 aa11.07□□□□□ -0.64
USP4-203ENST00000415188 OR9G4Q8NGQ1 327 aa11.07□□□□□ -0.64
USP4-203ENST00000415188 DCANP1Q8TF63 244 aa11.07□□□□□ -0.64
USP4-203ENST00000415188 ZMAT4Q9H898 229 aa11.07□□□□□ -0.64
USP4-203ENST00000415188 PHLDA3Q9Y5J5 127 aa11.07□□□□□ -0.64
USP4-203ENST00000415188 COX11Q9Y6N1 276 aa11.07□□□□□ -0.64
USP4-203ENST00000415188 TGP01266 2768 aa11.07□□□□□ -0.64
USP4-203ENST00000415188 NUDT3O95989 172 aa11.06□□□□□ -0.64
USP4-203ENST00000415188 FGF6P10767 208 aa11.06□□□□□ -0.64
USP4-203ENST00000415188 GATA1P15976 413 aaPredicted RBP11.06□□□□□ -0.64
USP4-203ENST00000415188 RNASE4P34096 147 aaKnown RBP11.06□□□□□ -0.64
USP4-203ENST00000415188 TMEM95Q3KNT9 176 aa11.06□□□□□ -0.64
USP4-203ENST00000415188 ANKRD39Q53RE8 183 aa11.06□□□□□ -0.64
USP4-203ENST00000415188 MPV17L2Q567V2 206 aa11.06□□□□□ -0.64
USP4-203ENST00000415188 BOD1L2Q8IYS8 172 aa11.06□□□□□ -0.64
USP4-203ENST00000415188 RNF152Q8N8N0 203 aa11.06□□□□□ -0.64
USP4-203ENST00000415188 AP1S3Q96PC3 154 aa11.06□□□□□ -0.64
USP4-203ENST00000415188 SMIM2Q9BVW6 85 aa11.06□□□□□ -0.64
USP4-203ENST00000415188 ODF1Q14990 250 aa11.06□□□□□ -0.64
USP4-203ENST00000415188 ORMDL2Q53FV1 153 aa11.06□□□□□ -0.64
USP4-203ENST00000415188 Q6ZQT7 251 aa11.06□□□□□ -0.64
USP4-203ENST00000415188 C2orf91Q6ZV80 131 aa11.06□□□□□ -0.64
USP4-203ENST00000415188 POM121L12Q8N7R1 296 aa11.06□□□□□ -0.64
USP4-203ENST00000415188 ZNF702PQ9H963 129 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 140.2 ms