RNA–Protein interactions for RNA: ENST00000406019.1

HMGB1P13-201, Transcript of high mobility group box 1 pseudogene 13, humanhuman

BASIC

Gene HMGB1P13, Length 642 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P13-201ENST00000406019 C11orf1Q9H5F2 150 aa2.59□□□□□ -1.99
HMGB1P13-201ENST00000406019 HIGD1BQ9P298 99 aa2.59□□□□□ -1.99
HMGB1P13-201ENST00000406019 MCM3APO60318 1980 aa2.59□□□□□ -2
HMGB1P13-201ENST00000406019 TOPAZ1Q8N9V7 1692 aa2.59□□□□□ -2
HMGB1P13-201ENST00000406019 SHANK3Q9BYB0 1731 aa2.59□□□□□ -2
HMGB1P13-201ENST00000406019 LCTP09848 1927 aa2.58□□□□□ -2
HMGB1P13-201ENST00000406019 UNC13BO14795 1591 aa2.58□□□□□ -2
HMGB1P13-201ENST00000406019 UGGT1Q9NYU2 1555 aa2.58□□□□□ -2
HMGB1P13-201ENST00000406019 FXYD6-FXYD2A0A087WZ82 144 aa2.58□□□□□ -2
HMGB1P13-201ENST00000406019 A0A1W2PQD3 144 aa2.58□□□□□ -2
HMGB1P13-201ENST00000406019 SSSCA1O60232 199 aa2.58□□□□□ -2
HMGB1P13-201ENST00000406019 IGHV3-7P01780 117 aa2.58□□□□□ -2
HMGB1P13-201ENST00000406019 PRM2P04554 102 aa2.58□□□□□ -2
HMGB1P13-201ENST00000406019 IL5P05113 134 aa2.58□□□□□ -2
HMGB1P13-201ENST00000406019 SLC25A16P16260 332 aa2.58□□□□□ -2
HMGB1P13-201ENST00000406019 FUSP35637 526 aaKnown RBP eCLIP2.58□□□□□ -2
HMGB1P13-201ENST00000406019 EFNA4P52798 201 aa2.58□□□□□ -2
HMGB1P13-201ENST00000406019 RPL30P62888 115 aaKnown RBP2.58□□□□□ -2
HMGB1P13-201ENST00000406019 RPL18Q07020 188 aaKnown RBP2.58□□□□□ -2
HMGB1P13-201ENST00000406019 SDIM1Q6ZPB5 146 aa2.58□□□□□ -2
HMGB1P13-201ENST00000406019 C2orf91Q6ZV80 131 aa2.58□□□□□ -2
HMGB1P13-201ENST00000406019 COPS9Q8WXC6 57 aa2.58□□□□□ -2
HMGB1P13-201ENST00000406019 AQP3Q92482 292 aa2.58□□□□□ -2
HMGB1P13-201ENST00000406019 NPCDR1Q9BY65 106 aa2.58□□□□□ -2
HMGB1P13-201ENST00000406019 TTTY13Q9BZ97 58 aa2.58□□□□□ -2
HMGB1P13-201ENST00000406019 FXYD6Q9H0Q3 95 aa2.58□□□□□ -2
HMGB1P13-201ENST00000406019 CXCL16Q9H2A7 254 aa2.58□□□□□ -2
HMGB1P13-201ENST00000406019 RGPD4Q7Z3J3 1758 aa2.58□□□□□ -2
HMGB1P13-201ENST00000406019 ARFGEF2Q9Y6D5 1785 aa2.58□□□□□ -2
HMGB1P13-201ENST00000406019 DSCAMO60469 2012 aa2.58□□□□□ -2
HMGB1P13-201ENST00000406019 EFCAB6Q5THR3 1501 aa2.58□□□□□ -2
HMGB1P13-201ENST00000406019 ASXL1Q8IXJ9 1541 aa2.58□□□□□ -2
HMGB1P13-201ENST00000406019 NESP48681 1621 aa2.57□□□□□ -2
HMGB1P13-201ENST00000406019 POLEQ07864 2286 aa2.57□□□□□ -2
HMGB1P13-201ENST00000406019 COL24A1Q17RW2 1714 aa2.57□□□□□ -2
HMGB1P13-201ENST00000406019 SUPT6HQ7KZ85 1726 aaKnown RBP2.57□□□□□ -2
HMGB1P13-201ENST00000406019 HCRTO43612 131 aa2.57□□□□□ -2
HMGB1P13-201ENST00000406019 IGLV3-19P01714 112 aa2.57□□□□□ -2
HMGB1P13-201ENST00000406019 TSPEAR-AS2P59090 65 aa2.57□□□□□ -2
HMGB1P13-201ENST00000406019 HIST1H4AP62805 103 aaKnown RBP2.57□□□□□ -2
HMGB1P13-201ENST00000406019 BLCAPP62952 87 aa2.57□□□□□ -2
HMGB1P13-201ENST00000406019 RBM3P98179 157 aaKnown RBP2.57□□□□□ -2
HMGB1P13-201ENST00000406019 ZNF345Q14585 488 aa2.57□□□□□ -2
HMGB1P13-201ENST00000406019 PMCHL1Q16048 86 aa2.57□□□□□ -2
HMGB1P13-201ENST00000406019 CFAP126Q5VTH2 177 aa2.57□□□□□ -2
HMGB1P13-201ENST00000406019 C5orf38Q86SI9 138 aa2.57□□□□□ -2
HMGB1P13-201ENST00000406019 RABAC1Q9UI14 185 aa2.57□□□□□ -2
HMGB1P13-201ENST00000406019 MYLKQ15746 1914 aa2.57□□□□□ -2
HMGB1P13-201ENST00000406019 SHROOM3Q8TF72 1996 aa2.57□□□□□ -2
HMGB1P13-201ENST00000406019 EDC4Q6P2E9 1401 aaKnown RBP2.57□□□□□ -2
HMGB1P13-201ENST00000406019 CFAP43Q8NDM7 1665 aa2.57□□□□□ -2
HMGB1P13-201ENST00000406019 PEAK1Q9H792 1746 aa2.56□□□□□ -2
HMGB1P13-201ENST00000406019 TANC1Q9C0D5 1861 aa2.56□□□□□ -2
HMGB1P13-201ENST00000406019 UBE2L5PA0A1B0GUS4 154 aa2.56□□□□□ -2
HMGB1P13-201ENST00000406019 KANTRA0A1W2PQU2 76 aa2.56□□□□□ -2
HMGB1P13-201ENST00000406019 IBA57-AS1B1ANH7 110 aa2.56□□□□□ -2
HMGB1P13-201ENST00000406019 C17orf112F2Z3M2 114 aa2.56□□□□□ -2
HMGB1P13-201ENST00000406019 ASAH2BP0C7U1 165 aa2.56□□□□□ -2
HMGB1P13-201ENST00000406019 ZNF22P17026 224 aaPredicted RBP2.56□□□□□ -2
HMGB1P13-201ENST00000406019 NPPCP23582 126 aa2.56□□□□□ -2
HMGB1P13-201ENST00000406019 KRTDAPP60985 99 aa2.56□□□□□ -2
HMGB1P13-201ENST00000406019 PCBD1P61457 104 aa2.56□□□□□ -2
HMGB1P13-201ENST00000406019 UBE2L3P68036 154 aaKnown RBP2.56□□□□□ -2
HMGB1P13-201ENST00000406019 MRPS36P82909 103 aaKnown RBP2.56□□□□□ -2
HMGB1P13-201ENST00000406019 PYDC2Q56P42 97 aa2.56□□□□□ -2
HMGB1P13-201ENST00000406019 S100A7L2Q5SY68 101 aa2.56□□□□□ -2
HMGB1P13-201ENST00000406019 OR5AS1Q8N127 324 aa2.56□□□□□ -2
HMGB1P13-201ENST00000406019 KIAA0586Q9BVV6 1533 aa2.56□□□□□ -2
HMGB1P13-201ENST00000406019 PTPN23Q9H3S7 1636 aa2.56□□□□□ -2
HMGB1P13-201ENST00000406019 PIK3C2AO00443 1686 aa2.56□□□□□ -2
HMGB1P13-201ENST00000406019 RGPD3A6NKT7 1758 aaPredicted RBP2.56□□□□□ -2
HMGB1P13-201ENST00000406019 MICAL3Q7RTP6 2002 aa2.56□□□□□ -2
HMGB1P13-201ENST00000406019 IGKV1D-17A0A075B6S4 117 aa2.55□□□□□ -2
HMGB1P13-201ENST00000406019 TRAV2A0A0B4J234 112 aa2.55□□□□□ -2
HMGB1P13-201ENST00000406019 TRAV17A0A0B4J275 112 aa2.55□□□□□ -2
HMGB1P13-201ENST00000406019 B4DSR2 109 aa2.55□□□□□ -2
HMGB1P13-201ENST00000406019 ATOX1O00244 68 aa2.55□□□□□ -2
HMGB1P13-201ENST00000406019 LEPROTO15243 131 aa2.55□□□□□ -2
HMGB1P13-201ENST00000406019 CCKP06307 115 aa2.55□□□□□ -2
HMGB1P13-201ENST00000406019 RGPD1P0DJD0 1748 aa2.55□□□□□ -2
HMGB1P13-201ENST00000406019 RNASE2P10153 161 aaKnown RBP2.55□□□□□ -2
HMGB1P13-201ENST00000406019 CCL4P13236 92 aa2.55□□□□□ -2
HMGB1P13-201ENST00000406019 S100A4P26447 101 aaKnown RBP2.55□□□□□ -2
HMGB1P13-201ENST00000406019 CIRBPQ14011 172 aaKnown RBP2.55□□□□□ -2
HMGB1P13-201ENST00000406019 MED1Q15648 1581 aaPredicted RBP2.55□□□□□ -2
HMGB1P13-201ENST00000406019 ZNF322Q6U7Q0 402 aaPredicted RBP2.55□□□□□ -2
HMGB1P13-201ENST00000406019 LYPD1Q8N2G4 141 aa2.55□□□□□ -2
HMGB1P13-201ENST00000406019 LTBP4Q8N2S1 1624 aa2.55□□□□□ -2
HMGB1P13-201ENST00000406019 EHBP1L1Q8N3D4 1523 aa2.55□□□□□ -2
HMGB1P13-201ENST00000406019 SIGLECL1Q8N7X8 197 aa2.55□□□□□ -2
HMGB1P13-201ENST00000406019 PATJQ8NI35 1801 aa2.55□□□□□ -2
HMGB1P13-201ENST00000406019 ABCA5Q8WWZ7 1642 aa2.55□□□□□ -2
HMGB1P13-201ENST00000406019 CLEC2BQ92478 149 aa2.55□□□□□ -2
HMGB1P13-201ENST00000406019 ZNF714Q96N38 554 aa2.55□□□□□ -2
HMGB1P13-201ENST00000406019 NABP2Q9BQ15 211 aa2.55□□□□□ -2
HMGB1P13-201ENST00000406019 SMDT1Q9H4I9 107 aa2.55□□□□□ -2
HMGB1P13-201ENST00000406019 TMEM242Q9NWH2 141 aa2.55□□□□□ -2
HMGB1P13-201ENST00000406019 KIDINS220Q9ULH0 1771 aa2.55□□□□□ -2
HMGB1P13-201ENST00000406019 HILPDAQ9Y5L2 63 aa2.55□□□□□ -2
HMGB1P13-201ENST00000406019 MAST2Q6P0Q8 1798 aa2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms