RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 C18orf32Q8TCD1 76 aa6.91□□□□□ -1.3
LIG4-202ENST00000405925 MRAP2Q96G30 205 aa6.91□□□□□ -1.3
LIG4-202ENST00000405925 IGF2BP2-AS1Q96M15 143 aa6.91□□□□□ -1.3
LIG4-202ENST00000405925 KLF12Q9Y4X4 402 aa6.91□□□□□ -1.3
LIG4-202ENST00000405925 C9orf47Q6ZRZ4 202 aa6.91□□□□□ -1.3
LIG4-202ENST00000405925 ARL6IP6Q8N6S5 226 aa6.91□□□□□ -1.3
LIG4-202ENST00000405925 NOP10Q9NPE3 64 aaKnown RBP6.91□□□□□ -1.3
LIG4-202ENST00000405925 IGSF10Q6WRI0 2623 aa6.91□□□□□ -1.3
LIG4-202ENST00000405925 MAP1AP78559 2803 aaPredicted RBP6.91□□□□□ -1.3
LIG4-202ENST00000405925 A0A0J9YX75 114 aa6.91□□□□□ -1.3
LIG4-202ENST00000405925 LINC00518Q8N0U6 118 aa6.91□□□□□ -1.3
LIG4-202ENST00000405925 ADARB2-AS1A8MUL3 147 aa6.91□□□□□ -1.3
LIG4-202ENST00000405925 IGLV1-40P01703 118 aa6.91□□□□□ -1.3
LIG4-202ENST00000405925 TRPT1Q86TN4 253 aaKnown RBP6.91□□□□□ -1.3
LIG4-202ENST00000405925 SPXQ9BT56 116 aa6.91□□□□□ -1.3
LIG4-202ENST00000405925 SDHAF1A6NFY7 115 aa6.9□□□□□ -1.3
LIG4-202ENST00000405925 LGALS9O00182 355 aa6.9□□□□□ -1.3
LIG4-202ENST00000405925 UBE2CO00762 179 aa6.9□□□□□ -1.3
LIG4-202ENST00000405925 FOSL1P15407 271 aa6.9□□□□□ -1.3
LIG4-202ENST00000405925 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.9□□□□□ -1.3
LIG4-202ENST00000405925 U3KQE9 123 aa6.9□□□□□ -1.3
LIG4-202ENST00000405925 GCSHP23434 173 aa6.9□□□□□ -1.31
LIG4-202ENST00000405925 DEFB114Q30KQ6 69 aa6.9□□□□□ -1.31
LIG4-202ENST00000405925 NEGR1Q7Z3B1 354 aa6.9□□□□□ -1.31
LIG4-202ENST00000405925 MSRB1Q9NZV6 116 aa6.9□□□□□ -1.31
LIG4-202ENST00000405925 LAMTOR2Q9Y2Q5 125 aa6.9□□□□□ -1.31
LIG4-202ENST00000405925 CHD6Q8TD26 2715 aa6.9□□□□□ -1.31
LIG4-202ENST00000405925 SPTBN5Q9NRC6 3674 aaKnown RBP6.9□□□□□ -1.31
LIG4-202ENST00000405925 K7EQG2 157 aa6.9□□□□□ -1.31
LIG4-202ENST00000405925 CRXO43186 299 aaPredicted RBP6.9□□□□□ -1.31
LIG4-202ENST00000405925 ZNF25P17030 456 aaPredicted RBP6.9□□□□□ -1.31
LIG4-202ENST00000405925 DMRTA1Q5VZB9 504 aa6.9□□□□□ -1.31
LIG4-202ENST00000405925 ZNRF2Q8NHG8 242 aa6.9□□□□□ -1.31
LIG4-202ENST00000405925 MAP6D1Q9H9H5 199 aa6.9□□□□□ -1.31
LIG4-202ENST00000405925 IGHV3-38A0A0C4DH36 116 aa6.89□□□□□ -1.31
LIG4-202ENST00000405925 M0R2P5 195 aa6.89□□□□□ -1.31
LIG4-202ENST00000405925 INSL3P51460 131 aa6.89□□□□□ -1.31
LIG4-202ENST00000405925 HIST1H4GQ99525 98 aa6.89□□□□□ -1.31
LIG4-202ENST00000405925 ATRQ13535 2644 aa6.89□□□□□ -1.31
LIG4-202ENST00000405925 H3BRM9 83 aa6.89□□□□□ -1.31
LIG4-202ENST00000405925 NPYP01303 97 aa6.89□□□□□ -1.31
LIG4-202ENST00000405925 PSMB2P49721 201 aa6.89□□□□□ -1.31
LIG4-202ENST00000405925 HINT1P49773 126 aaPredicted RBP6.89□□□□□ -1.31
LIG4-202ENST00000405925 ALKBH7Q9BT30 221 aaPredicted RBP6.89□□□□□ -1.31
LIG4-202ENST00000405925 DPM2O94777 84 aa6.89□□□□□ -1.31
LIG4-202ENST00000405925 PET117Q6UWS5 81 aa6.89□□□□□ -1.31
LIG4-202ENST00000405925 Q8N1Y9 231 aa6.89□□□□□ -1.31
LIG4-202ENST00000405925 CRPP02741 224 aa6.88□□□□□ -1.31
LIG4-202ENST00000405925 DEFB135Q30KP9 77 aa6.88□□□□□ -1.31
LIG4-202ENST00000405925 DEFB125Q8N687 156 aa6.88□□□□□ -1.31
LIG4-202ENST00000405925 OR5A1Q8NGJ0 315 aa6.88□□□□□ -1.31
LIG4-202ENST00000405925 CIRBPQ14011 172 aaKnown RBP6.88□□□□□ -1.31
LIG4-202ENST00000405925 CHTOPQ9Y3Y2 248 aaKnown RBP6.88□□□□□ -1.31
LIG4-202ENST00000405925 DSCAML1Q8TD84 2053 aa6.88□□□□□ -1.31
LIG4-202ENST00000405925 LOC105371267A0A1B0GV96 52 aa6.88□□□□□ -1.31
LIG4-202ENST00000405925 LINC01549A6NIU2 74 aa6.88□□□□□ -1.31
LIG4-202ENST00000405925 C3orf79P0CE67 100 aa6.88□□□□□ -1.31
LIG4-202ENST00000405925 JOSD1Q15040 202 aaPredicted RBP6.88□□□□□ -1.31
LIG4-202ENST00000405925 LINC01559Q495D7 138 aa6.88□□□□□ -1.31
LIG4-202ENST00000405925 LINC00469Q8N7U9 141 aa6.88□□□□□ -1.31
LIG4-202ENST00000405925 A6NDN8 102 aa6.87□□□□□ -1.31
LIG4-202ENST00000405925 CRLF1O75462 422 aa6.87□□□□□ -1.31
LIG4-202ENST00000405925 DDTP30046 118 aa6.87□□□□□ -1.31
LIG4-202ENST00000405925 Q0VG73 95 aa6.87□□□□□ -1.31
LIG4-202ENST00000405925 MORN3Q6PF18 240 aaPredicted RBP6.87□□□□□ -1.31
LIG4-202ENST00000405925 UBE2DNLQ8IWF7 75 aa6.87□□□□□ -1.31
LIG4-202ENST00000405925 GTSF1Q8WW33 167 aa6.87□□□□□ -1.31
LIG4-202ENST00000405925 IGHV3-64A0A075B6Q5 118 aa6.87□□□□□ -1.31
LIG4-202ENST00000405925 A0A096LPF7 62 aa6.87□□□□□ -1.31
LIG4-202ENST00000405925 H7C2G1 150 aa6.87□□□□□ -1.31
LIG4-202ENST00000405925 HLA-DRB4P13762 266 aa6.87□□□□□ -1.31
LIG4-202ENST00000405925 KLF5Q13887 457 aaPredicted RBP6.87□□□□□ -1.31
LIG4-202ENST00000405925 DNLZQ5SXM8 178 aa6.87□□□□□ -1.31
LIG4-202ENST00000405925 ADAMTSL5Q6ZMM2 481 aa6.87□□□□□ -1.31
LIG4-202ENST00000405925 SMAD5-AS1Q9Y6J3 95 aa6.87□□□□□ -1.31
LIG4-202ENST00000405925 HLA-DRB4X5D2U9 266 aa6.87□□□□□ -1.31
LIG4-202ENST00000405925 COL27A1Q8IZC6 1860 aaPredicted RBP6.87□□□□□ -1.31
LIG4-202ENST00000405925 FREM2Q5SZK8 3169 aa6.87□□□□□ -1.31
LIG4-202ENST00000405925 TRAV13-1A0A0B4J241 112 aa6.87□□□□□ -1.31
LIG4-202ENST00000405925 SNCGO76070 127 aa6.87□□□□□ -1.31
LIG4-202ENST00000405925 GATA1P15976 413 aaPredicted RBP6.87□□□□□ -1.31
LIG4-202ENST00000405925 ZNF80P51504 273 aaPredicted RBP6.87□□□□□ -1.31
LIG4-202ENST00000405925 ZNF493Q6ZR52 646 aa6.87□□□□□ -1.31
LIG4-202ENST00000405925 ZNF124Q15973 351 aa6.86□□□□□ -1.31
LIG4-202ENST00000405925 C2orf66Q6UXQ4 117 aa6.86□□□□□ -1.31
LIG4-202ENST00000405925 C20orf173Q96LM9 149 aa6.86□□□□□ -1.31
LIG4-202ENST00000405925 SMIM2Q9BVW6 85 aa6.86□□□□□ -1.31
LIG4-202ENST00000405925 MALP21145 153 aa6.86□□□□□ -1.31
LIG4-202ENST00000405925 LINC00322Q6ZN03 302 aaPredicted RBP6.86□□□□□ -1.31
LIG4-202ENST00000405925 TEX43Q6ZNM6 134 aa6.86□□□□□ -1.31
LIG4-202ENST00000405925 RNF152Q8N8N0 203 aa6.86□□□□□ -1.31
LIG4-202ENST00000405925 ZMAT4Q9H898 229 aa6.86□□□□□ -1.31
LIG4-202ENST00000405925 TP53TG1Q9Y2A0 90 aa6.86□□□□□ -1.31
LIG4-202ENST00000405925 IGKCP01834 107 aa6.86□□□□□ -1.31
LIG4-202ENST00000405925 SIGLEC8Q9NYZ4 499 aa6.86□□□□□ -1.31
LIG4-202ENST00000405925 A0A0J9YY99 117 aa6.86□□□□□ -1.31
LIG4-202ENST00000405925 DEFB4AO15263 64 aa6.86□□□□□ -1.31
LIG4-202ENST00000405925 IGLL1P15814 213 aa6.86□□□□□ -1.31
LIG4-202ENST00000405925 SHISA2Q6UWI4 295 aa6.86□□□□□ -1.31
LIG4-202ENST00000405925 DMXL2Q8TDJ6 3036 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms