RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 ARMS2P0C7Q2 107 aa10.33□□□□□ -0.76
SKA1-202ENST00000398452 ZNF493Q6ZR52 646 aa10.33□□□□□ -0.76
SKA1-202ENST00000398452 SMIM15Q7Z3B0 74 aa10.33□□□□□ -0.76
SKA1-202ENST00000398452 CSNK1G2-AS1Q8NCQ2 148 aa10.33□□□□□ -0.76
SKA1-202ENST00000398452 NUP35Q8NFH5 326 aa10.33□□□□□ -0.76
SKA1-202ENST00000398452 TMEM263Q8WUH6 116 aaKnown RBP10.33□□□□□ -0.76
SKA1-202ENST00000398452 C16orf74Q96GX8 76 aa10.33□□□□□ -0.76
SKA1-202ENST00000398452 K7EIL1 84 aa10.32□□□□□ -0.76
SKA1-202ENST00000398452 SPRY2O43597 315 aa10.32□□□□□ -0.76
SKA1-202ENST00000398452 SPINK4O60575 86 aa10.32□□□□□ -0.76
SKA1-202ENST00000398452 OR5AL1P0C617 328 aa10.32□□□□□ -0.76
SKA1-202ENST00000398452 FOXA3P55318 350 aaPredicted RBP10.32□□□□□ -0.76
SKA1-202ENST00000398452 DNLZQ5SXM8 178 aa10.32□□□□□ -0.76
SKA1-202ENST00000398452 LYZL1Q6UWQ5 148 aa10.32□□□□□ -0.76
SKA1-202ENST00000398452 ZNF705AQ6ZN79 300 aaPredicted RBP10.32□□□□□ -0.76
SKA1-202ENST00000398452 GTSF1Q8WW33 167 aa10.32□□□□□ -0.76
SKA1-202ENST00000398452 SPXQ9BT56 116 aa10.32□□□□□ -0.76
SKA1-202ENST00000398452 IGHV3-16A0A0C4DH30 117 aa10.31□□□□□ -0.76
SKA1-202ENST00000398452 A0A1B0GW15 77 aa10.31□□□□□ -0.76
SKA1-202ENST00000398452 IGLC6P0CF74 106 aa10.31□□□□□ -0.76
SKA1-202ENST00000398452 SSTP61278 116 aa10.31□□□□□ -0.76
SKA1-202ENST00000398452 TWIST1Q15672 202 aa10.31□□□□□ -0.76
SKA1-202ENST00000398452 COX19Q49B96 90 aa10.31□□□□□ -0.76
SKA1-202ENST00000398452 MRPL54Q6P161 138 aaKnown RBP10.31□□□□□ -0.76
SKA1-202ENST00000398452 ATP5L2Q7Z4Y8 100 aa10.31□□□□□ -0.76
SKA1-202ENST00000398452 ZFP82Q8N141 532 aa10.31□□□□□ -0.76
SKA1-202ENST00000398452 OR11H2Q8NH07 326 aa10.31□□□□□ -0.76
SKA1-202ENST00000398452 RNF183Q96D59 192 aa10.31□□□□□ -0.76
SKA1-202ENST00000398452 TP53TG3Q9ULZ0 132 aa10.31□□□□□ -0.76
SKA1-202ENST00000398452 TP53TG1Q9Y2A0 90 aa10.31□□□□□ -0.76
SKA1-202ENST00000398452 M0R381 172 aa10.3□□□□□ -0.76
SKA1-202ENST00000398452 SNAI2O43623 268 aa10.3□□□□□ -0.76
SKA1-202ENST00000398452 CTRLP40313 264 aa10.3□□□□□ -0.76
SKA1-202ENST00000398452 RAB4BP61018 213 aa10.3□□□□□ -0.76
SKA1-202ENST00000398452 ELOBQ15370 118 aa10.3□□□□□ -0.76
SKA1-202ENST00000398452 WDR73Q6P4I2 378 aa10.3□□□□□ -0.76
SKA1-202ENST00000398452 FAM210BQ96KR6 192 aa10.3□□□□□ -0.76
SKA1-202ENST00000398452 GSN-AS1Q9NRJ2 163 aa10.3□□□□□ -0.76
SKA1-202ENST00000398452 TRBV24-1A0A075B6N3 115 aa10.29□□□□□ -0.76
SKA1-202ENST00000398452 TRGC1P0CF51 173 aa10.29□□□□□ -0.76
SKA1-202ENST00000398452 MIFP14174 115 aa10.29□□□□□ -0.76
SKA1-202ENST00000398452 CAMPP49913 170 aa10.29□□□□□ -0.76
SKA1-202ENST00000398452 HBBP68871 147 aa10.29□□□□□ -0.76
SKA1-202ENST00000398452 RASL11AQ6T310 242 aa10.29□□□□□ -0.76
SKA1-202ENST00000398452 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.29□□□□□ -0.76
SKA1-202ENST00000398452 MDFICQ9P1T7 246 aa10.29□□□□□ -0.76
SKA1-202ENST00000398452 TGIF2-C20orf24A0A0A6YYL0 155 aa10.28□□□□□ -0.76
SKA1-202ENST00000398452 MUC21A0A0G2JKD1 596 aa10.28□□□□□ -0.76
SKA1-202ENST00000398452 MUC21A0A140T8X8 626 aa10.28□□□□□ -0.76
SKA1-202ENST00000398452 M0R2P5 195 aa10.28□□□□□ -0.76
SKA1-202ENST00000398452 SMIM17P0DL12 118 aa10.28□□□□□ -0.76
SKA1-202ENST00000398452 RNASE3P12724 160 aaKnown RBP10.28□□□□□ -0.76
SKA1-202ENST00000398452 OR10AG1Q8NH19 301 aa10.28□□□□□ -0.76
SKA1-202ENST00000398452 C9orf85Q96MD7 179 aa10.28□□□□□ -0.76
SKA1-202ENST00000398452 SPATA25Q9BR10 227 aa10.28□□□□□ -0.76
SKA1-202ENST00000398452 SSBP4Q9BWG4 385 aaPredicted RBP10.28□□□□□ -0.76
SKA1-202ENST00000398452 ZMAT4Q9H898 229 aa10.28□□□□□ -0.76
SKA1-202ENST00000398452 AZU1P20160 251 aa10.27□□□□□ -0.77
SKA1-202ENST00000398452 NTF3P20783 257 aa10.27□□□□□ -0.77
SKA1-202ENST00000398452 EMP1P54849 157 aa10.27□□□□□ -0.77
SKA1-202ENST00000398452 ZNF876PQ49A33 203 aa10.27□□□□□ -0.77
SKA1-202ENST00000398452 RNASE8Q8TDE3 154 aaKnown RBP10.27□□□□□ -0.77
SKA1-202ENST00000398452 AP1S3Q96PC3 154 aa10.27□□□□□ -0.77
SKA1-202ENST00000398452 KRTAP4-8Q9BYQ9 185 aa10.27□□□□□ -0.77
SKA1-202ENST00000398452 MT-ND6P03923 174 aa10.26□□□□□ -0.77
SKA1-202ENST00000398452 PRM2P04554 102 aa10.26□□□□□ -0.77
SKA1-202ENST00000398452 SCRT2Q9NQ03 307 aa10.26□□□□□ -0.77
SKA1-202ENST00000398452 TRGV1A0A0A0MS02 117 aa10.25□□□□□ -0.77
SKA1-202ENST00000398452 RPS10P46783 165 aaKnown RBP10.25□□□□□ -0.77
SKA1-202ENST00000398452 C11orf72Q8NBR9 251 aa10.25□□□□□ -0.77
SKA1-202ENST00000398452 FRZBQ92765 325 aa10.25□□□□□ -0.77
SKA1-202ENST00000398452 NDUFAF3Q9BU61 184 aa10.25□□□□□ -0.77
SKA1-202ENST00000398452 CNFNQ9BYD5 112 aa10.25□□□□□ -0.77
SKA1-202ENST00000398452 NOP10Q9NPE3 64 aaKnown RBP10.25□□□□□ -0.77
SKA1-202ENST00000398452 X6R8D5 127 aa10.25□□□□□ -0.77
SKA1-202ENST00000398452 IGHV4-4A0A075B6R2 117 aa10.24□□□□□ -0.77
SKA1-202ENST00000398452 TEX48A0A1B0GUV7 120 aa10.24□□□□□ -0.77
SKA1-202ENST00000398452 FAM229AH3BQW9 127 aa10.24□□□□□ -0.77
SKA1-202ENST00000398452 HLA-DQA1P01909 254 aa10.24□□□□□ -0.77
SKA1-202ENST00000398452 RAB5AP20339 215 aa10.24□□□□□ -0.77
SKA1-202ENST00000398452 DAZ2Q13117 558 aaKnown RBP10.24□□□□□ -0.77
SKA1-202ENST00000398452 LGALS9BQ3B8N2 356 aa10.24□□□□□ -0.77
SKA1-202ENST00000398452 SBSPONQ8IVN8 264 aa10.24□□□□□ -0.77
SKA1-202ENST00000398452 PTH2Q96A98 100 aa10.24□□□□□ -0.77
SKA1-202ENST00000398452 OVOL2Q9BRP0 275 aa10.24□□□□□ -0.77
SKA1-202ENST00000398452 IGHV4-28A0A0C4DH34 117 aa10.23□□□□□ -0.77
SKA1-202ENST00000398452 COLCA2A8K830 154 aa10.23□□□□□ -0.77
SKA1-202ENST00000398452 A8MWV9 139 aa10.23□□□□□ -0.77
SKA1-202ENST00000398452 PIK3CD-AS1Q5SR53 167 aa10.23□□□□□ -0.77
SKA1-202ENST00000398452 GNB1LQ9BYB4 327 aa10.23□□□□□ -0.77
SKA1-202ENST00000398452 MRPL16Q9NX20 251 aaKnown RBP10.23□□□□□ -0.77
SKA1-202ENST00000398452 TRAPPC1Q9Y5R8 145 aa10.23□□□□□ -0.77
SKA1-202ENST00000398452 TRGV2A0A075B6R0 118 aa10.22□□□□□ -0.77
SKA1-202ENST00000398452 A0A1B0GXF2 115 aa10.22□□□□□ -0.77
SKA1-202ENST00000398452 LYRM9A8MSI8 78 aa10.22□□□□□ -0.77
SKA1-202ENST00000398452 ZNF575Q86XF7 245 aa10.22□□□□□ -0.77
SKA1-202ENST00000398452 YPEL4Q96NS1 127 aa10.22□□□□□ -0.77
SKA1-202ENST00000398452 TMEM191AQ9H0A3 160 aa10.22□□□□□ -0.77
SKA1-202ENST00000398452 DPH3P1Q9H4G8 78 aa10.22□□□□□ -0.77
SKA1-202ENST00000398452 RETNQ9HD89 108 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms