RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 NKAPP1Q8N9T2 125 aa8.08□□□□□ -1.12
LIMCH1-203ENST00000396595 CLUHP3Q96NS8 147 aa8.08□□□□□ -1.12
LIMCH1-203ENST00000396595 RBAKDNA6NC62 111 aa8.08□□□□□ -1.12
LIMCH1-203ENST00000396595 TSC2P49815 1807 aa8.07□□□□□ -1.12
LIMCH1-203ENST00000396595 IGHV3-38A0A0C4DH36 116 aa8.07□□□□□ -1.12
LIMCH1-203ENST00000396595 TRBV12-3P01733 135 aa8.07□□□□□ -1.12
LIMCH1-203ENST00000396595 H3BUA1 57 aa8.07□□□□□ -1.12
LIMCH1-203ENST00000396595 K7ENP7 123 aa8.07□□□□□ -1.12
LIMCH1-203ENST00000396595 RNF152Q8N8N0 203 aa8.07□□□□□ -1.12
LIMCH1-203ENST00000396595 ICOSQ9Y6W8 199 aa8.07□□□□□ -1.12
LIMCH1-203ENST00000396595 VPREB1P12018 145 aa8.07□□□□□ -1.12
LIMCH1-203ENST00000396595 ASPHD1Q5U4P2 390 aa8.07□□□□□ -1.12
LIMCH1-203ENST00000396595 C10orf105Q8TEF2 133 aa8.07□□□□□ -1.12
LIMCH1-203ENST00000396595 MED13LQ71F56 2210 aa8.07□□□□□ -1.12
LIMCH1-203ENST00000396595 CFHR3Q02985 330 aa8.07□□□□□ -1.12
LIMCH1-203ENST00000396595 PRR30Q53SZ7 412 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-203ENST00000396595 LRRC75A-AS1Q8N1F1 130 aa8.07□□□□□ -1.12
LIMCH1-203ENST00000396595 AGPAT4-IT1Q9H0P7 198 aa8.07□□□□□ -1.12
LIMCH1-203ENST00000396595 FUSP35637 526 aaKnown RBP eCLIP8.06□□□□□ -1.12
LIMCH1-203ENST00000396595 PCP2Q8IVA1 136 aa8.06□□□□□ -1.12
LIMCH1-203ENST00000396595 DYNAPQ8N1N2 210 aa8.06□□□□□ -1.12
LIMCH1-203ENST00000396595 HELZP42694 1942 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-203ENST00000396595 MT-ATP8P03928 68 aa8.06□□□□□ -1.12
LIMCH1-203ENST00000396595 C17orf77Q96MU5 243 aa8.06□□□□□ -1.12
LIMCH1-203ENST00000396595 NXPH4O95158 308 aa8.06□□□□□ -1.12
LIMCH1-203ENST00000396595 LINC00643Q86TS7 51 aa8.06□□□□□ -1.12
LIMCH1-203ENST00000396595 Q6ZSR3 168 aa8.06□□□□□ -1.12
LIMCH1-203ENST00000396595 RNF223E7ERA6 249 aa8.06□□□□□ -1.12
LIMCH1-203ENST00000396595 ELANEP08246 267 aa8.06□□□□□ -1.12
LIMCH1-203ENST00000396595 PLXNA2O75051 1894 aa8.06□□□□□ -1.12
LIMCH1-203ENST00000396595 C11orf53Q8IXP5 236 aa8.05□□□□□ -1.12
LIMCH1-203ENST00000396595 FAM215AQ9Y5M1 114 aa8.05□□□□□ -1.12
LIMCH1-203ENST00000396595 TRBV10-2A0A0K0K1G8 114 aa8.05□□□□□ -1.12
LIMCH1-203ENST00000396595 J3QLI3 93 aa8.05□□□□□ -1.12
LIMCH1-203ENST00000396595 SLC25A29Q8N8R3 303 aa8.05□□□□□ -1.12
LIMCH1-203ENST00000396595 ATP5EP56381 51 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-203ENST00000396595 GTF3C1Q12789 2109 aa8.05□□□□□ -1.12
LIMCH1-203ENST00000396595 NDUFA7O95182 113 aa8.04□□□□□ -1.12
LIMCH1-203ENST00000396595 CFHR4Q92496 578 aa8.04□□□□□ -1.12
LIMCH1-203ENST00000396595 C20orf197Q8N268 126 aa8.04□□□□□ -1.12
LIMCH1-203ENST00000396595 MLST8Q9BVC4 326 aa8.04□□□□□ -1.12
LIMCH1-203ENST00000396595 COL4A6Q14031 1691 aa8.04□□□□□ -1.12
LIMCH1-203ENST00000396595 NLRC5Q86WI3 1866 aa8.04□□□□□ -1.12
LIMCH1-203ENST00000396595 FOXE3Q13461 319 aa8.04□□□□□ -1.12
LIMCH1-203ENST00000396595 NREPQ16612 68 aa8.04□□□□□ -1.12
LIMCH1-203ENST00000396595 LYPD6Q86Y78 171 aa8.04□□□□□ -1.12
LIMCH1-203ENST00000396595 SMIM9A6NGZ8 99 aa8.03□□□□□ -1.12
LIMCH1-203ENST00000396595 LYRM9A8MSI8 78 aa8.03□□□□□ -1.12
LIMCH1-203ENST00000396595 K7ERS5 55 aa8.03□□□□□ -1.12
LIMCH1-203ENST00000396595 GP9P14770 177 aa8.03□□□□□ -1.12
LIMCH1-203ENST00000396595 A4D1N5 150 aa8.03□□□□□ -1.12
LIMCH1-203ENST00000396595 RNF138Q8WVD3 245 aa8.03□□□□□ -1.12
LIMCH1-203ENST00000396595 PLA2G2EQ9NZK7 142 aa8.03□□□□□ -1.12
LIMCH1-203ENST00000396595 VSIG2Q96IQ7 327 aa8.03□□□□□ -1.12
LIMCH1-203ENST00000396595 TRAV4A0A0B4J268 109 aa8.03□□□□□ -1.12
LIMCH1-203ENST00000396595 CENPVL3A0A0U1RRI6 287 aa8.03□□□□□ -1.12
LIMCH1-203ENST00000396595 FGF23Q9GZV9 251 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-203ENST00000396595 WDR81Q562E7 1941 aa8.03□□□□□ -1.12
LIMCH1-203ENST00000396595 EML6Q6ZMW3 1958 aa8.03□□□□□ -1.12
LIMCH1-203ENST00000396595 H0YGX0 51 aa8.02□□□□□ -1.12
LIMCH1-203ENST00000396595 H3BT86 120 aa8.02□□□□□ -1.12
LIMCH1-203ENST00000396595 NUPR1O60356 82 aa8.02□□□□□ -1.12
LIMCH1-203ENST00000396595 CTSZQ9UBR2 303 aa8.02□□□□□ -1.12
LIMCH1-203ENST00000396595 GNRH2O43555 120 aa8.02□□□□□ -1.13
LIMCH1-203ENST00000396595 H3BQ85 93 aa8.02□□□□□ -1.13
LIMCH1-203ENST00000396595 TIMM17BO60830 172 aa8.02□□□□□ -1.13
LIMCH1-203ENST00000396595 KRTAP27-1Q3LI81 207 aa8.02□□□□□ -1.13
LIMCH1-203ENST00000396595 IGHV4-28A0A0C4DH34 117 aa8.02□□□□□ -1.13
LIMCH1-203ENST00000396595 DEFB121Q5J5C9 76 aa8.02□□□□□ -1.13
LIMCH1-203ENST00000396595 C16orf54Q6UWD8 224 aa8.02□□□□□ -1.13
LIMCH1-203ENST00000396595 IGF2BP2-AS1Q96M15 143 aa8.02□□□□□ -1.13
LIMCH1-203ENST00000396595 TRAV23DV6A0A075B6W5 121 aa8.01□□□□□ -1.13
LIMCH1-203ENST00000396595 GATA1P15976 413 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-203ENST00000396595 APOC4P55056 127 aa8.01□□□□□ -1.13
LIMCH1-203ENST00000396595 RNASE13Q5GAN3 156 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-203ENST00000396595 PLXND1Q9Y4D7 1925 aa8.01□□□□□ -1.13
LIMCH1-203ENST00000396595 FXYD2P54710 66 aa8.01□□□□□ -1.13
LIMCH1-203ENST00000396595 Q9H8V8 135 aa8.01□□□□□ -1.13
LIMCH1-203ENST00000396595 CHD3Q12873 2000 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-203ENST00000396595 JMJD7-PLA2G4BH0Y9G9 81 aa8.01□□□□□ -1.13
LIMCH1-203ENST00000396595 LHBP01229 141 aa8.01□□□□□ -1.13
LIMCH1-203ENST00000396595 HRCT1Q6UXD1 115 aa8.01□□□□□ -1.13
LIMCH1-203ENST00000396595 A6NED7 52 aa8□□□□□ -1.13
LIMCH1-203ENST00000396595 I3L2K1 104 aa8□□□□□ -1.13
LIMCH1-203ENST00000396595 IGKV1-17P01599 117 aa8□□□□□ -1.13
LIMCH1-203ENST00000396595 RBX1P62877 108 aa8□□□□□ -1.13
LIMCH1-203ENST00000396595 UPK3BQ9BT76 320 aa8□□□□□ -1.13
LIMCH1-203ENST00000396595 HIGD1BQ9P298 99 aa8□□□□□ -1.13
LIMCH1-203ENST00000396595 TICRRQ7Z2Z1 1910 aa8□□□□□ -1.13
LIMCH1-203ENST00000396595 MED13Q9UHV7 2174 aa8□□□□□ -1.13
LIMCH1-203ENST00000396595 NDUFB1O75438 58 aa8□□□□□ -1.13
LIMCH1-203ENST00000396595 SP5Q6BEB4 398 aaPredicted RBP8□□□□□ -1.13
LIMCH1-203ENST00000396595 PATE2Q6UY27 113 aa8□□□□□ -1.13
LIMCH1-203ENST00000396595 LINC00173Q6ZV60 143 aa8□□□□□ -1.13
LIMCH1-203ENST00000396595 PRR15LQ9BU68 103 aa8□□□□□ -1.13
LIMCH1-203ENST00000396595 K7EIM0 57 aa8□□□□□ -1.13
LIMCH1-203ENST00000396595 ANGP03950 147 aaKnown RBP8□□□□□ -1.13
LIMCH1-203ENST00000396595 UBE2BP63146 152 aa8□□□□□ -1.13
LIMCH1-203ENST00000396595 DEFB105AQ8NG35 78 aa8□□□□□ -1.13
LIMCH1-203ENST00000396595 IGLC6P0CF74 106 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms