RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 A0A1B0GV90 55 aa13.58□□□□□ -0.24
CCDC88C-203ENST00000389856 F6UB75 175 aa13.58□□□□□ -0.24
CCDC88C-203ENST00000389856 TWIST1Q15672 202 aa13.58□□□□□ -0.24
CCDC88C-203ENST00000389856 MRPL51Q4U2R6 128 aaKnown RBP13.58□□□□□ -0.24
CCDC88C-203ENST00000389856 LINC00469Q8N7U9 141 aa13.58□□□□□ -0.24
CCDC88C-203ENST00000389856 C2CD3Q4AC94 2353 aa13.58□□□□□ -0.24
CCDC88C-203ENST00000389856 D6R8Y8 96 aa13.57□□□□□ -0.24
CCDC88C-203ENST00000389856 KRTAP10-3P60369 221 aa13.57□□□□□ -0.24
CCDC88C-203ENST00000389856 NUTF2P61970 127 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-203ENST00000389856 APRG1Q8IVJ8 170 aa13.57□□□□□ -0.24
CCDC88C-203ENST00000389856 ST20Q9HBF5 79 aa13.57□□□□□ -0.24
CCDC88C-203ENST00000389856 AMN1Q8IY45 258 aa13.57□□□□□ -0.24
CCDC88C-203ENST00000389856 ZFAND2AQ8N6M9 145 aa13.57□□□□□ -0.24
CCDC88C-203ENST00000389856 CKS2P33552 79 aa13.56□□□□□ -0.24
CCDC88C-203ENST00000389856 DEFB131AP59861 70 aa13.56□□□□□ -0.24
CCDC88C-203ENST00000389856 CACNG7P62955 275 aa13.56□□□□□ -0.24
CCDC88C-203ENST00000389856 ZNF575Q86XF7 245 aa13.56□□□□□ -0.24
CCDC88C-203ENST00000389856 MRPS16Q9Y3D3 137 aaKnown RBP13.56□□□□□ -0.24
CCDC88C-203ENST00000389856 SETD2Q9BYW2 2564 aaPredicted RBP13.55□□□□□ -0.24
CCDC88C-203ENST00000389856 CITED1Q99966 193 aa13.55□□□□□ -0.24
CCDC88C-203ENST00000389856 IGHV4-4A0A075B6R2 117 aa13.54□□□□□ -0.24
CCDC88C-203ENST00000389856 HSBP1L1C9JCN9 74 aa13.54□□□□□ -0.24
CCDC88C-203ENST00000389856 HLA-DRB4P13762 266 aa13.54□□□□□ -0.24
CCDC88C-203ENST00000389856 HNRNPA3P51991 378 aaKnown RBP13.54□□□□□ -0.24
CCDC88C-203ENST00000389856 SMIM15Q7Z3B0 74 aa13.54□□□□□ -0.24
CCDC88C-203ENST00000389856 MAP6D1Q9H9H5 199 aa13.54□□□□□ -0.24
CCDC88C-203ENST00000389856 HLA-DRB4X5D2U9 266 aa13.54□□□□□ -0.24
CCDC88C-203ENST00000389856 LINC01546A6NGU7 62 aa13.53□□□□□ -0.24
CCDC88C-203ENST00000389856 KLLNB2CW77 178 aa13.53□□□□□ -0.24
CCDC88C-203ENST00000389856 IGLV1-51P01701 117 aa13.53□□□□□ -0.24
CCDC88C-203ENST00000389856 RNASE4P34096 147 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-203ENST00000389856 DEFB1P60022 68 aa13.53□□□□□ -0.24
CCDC88C-203ENST00000389856 PRR31Q5SQ13 230 aa13.53□□□□□ -0.24
CCDC88C-203ENST00000389856 LINC01545Q5VT33 79 aa13.53□□□□□ -0.24
CCDC88C-203ENST00000389856 Q6ZN92 141 aa13.53□□□□□ -0.24
CCDC88C-203ENST00000389856 LINC00482Q8N8I6 264 aa13.53□□□□□ -0.24
CCDC88C-203ENST00000389856 ZNF747Q9BV97 191 aa13.53□□□□□ -0.24
CCDC88C-203ENST00000389856 IGKV3D-20A0A0C4DH25 116 aa13.53□□□□□ -0.24
CCDC88C-203ENST00000389856 CDKN1BP46527 198 aa13.53□□□□□ -0.24
CCDC88C-203ENST00000389856 INSL3P51460 131 aa13.53□□□□□ -0.24
CCDC88C-203ENST00000389856 MAP1LC3AQ9H492 121 aa13.53□□□□□ -0.24
CCDC88C-203ENST00000389856 ZNF256Q9Y2P7 627 aaPredicted RBP13.53□□□□□ -0.24
CCDC88C-203ENST00000389856 OR11H12B2RN74 326 aa13.52□□□□□ -0.25
CCDC88C-203ENST00000389856 SNAI2O43623 268 aa13.52□□□□□ -0.25
CCDC88C-203ENST00000389856 IFI27P40305 119 aaPredicted RBP13.52□□□□□ -0.25
CCDC88C-203ENST00000389856 C7orf71A4D174 169 aa13.51□□□□□ -0.25
CCDC88C-203ENST00000389856 J3KRW8 73 aa13.51□□□□□ -0.25
CCDC88C-203ENST00000389856 IGLL1P15814 213 aa13.51□□□□□ -0.25
CCDC88C-203ENST00000389856 RNF185Q96GF1 192 aa13.51□□□□□ -0.25
CCDC88C-203ENST00000389856 CLUHP3Q96NS8 147 aa13.51□□□□□ -0.25
CCDC88C-203ENST00000389856 FAM110AQ9BQ89 295 aa13.51□□□□□ -0.25
CCDC88C-203ENST00000389856 NXT2Q9NPJ8 142 aaKnown RBP13.51□□□□□ -0.25
CCDC88C-203ENST00000389856 A8MTW9 85 aa13.5□□□□□ -0.25
CCDC88C-203ENST00000389856 HBDP02042 147 aa13.5□□□□□ -0.25
CCDC88C-203ENST00000389856 MED14OSP0DP75 135 aa13.5□□□□□ -0.25
CCDC88C-203ENST00000389856 COL5A1-AS1Q5SY13 56 aa13.5□□□□□ -0.25
CCDC88C-203ENST00000389856 PRR9Q5T870 116 aa13.5□□□□□ -0.25
CCDC88C-203ENST00000389856 LINC00173Q6ZV60 143 aa13.5□□□□□ -0.25
CCDC88C-203ENST00000389856 ATOH7Q8N100 152 aa13.5□□□□□ -0.25
CCDC88C-203ENST00000389856 DEFB125Q8N687 156 aa13.5□□□□□ -0.25
CCDC88C-203ENST00000389856 FAM159AQ6UWV7 190 aa13.5□□□□□ -0.25
CCDC88C-203ENST00000389856 MCRIP2Q9BUT9 160 aaKnown RBP13.5□□□□□ -0.25
CCDC88C-203ENST00000389856 WNK1Q9H4A3 2382 aa13.49□□□□□ -0.25
CCDC88C-203ENST00000389856 H3BMM0 161 aa13.49□□□□□ -0.25
CCDC88C-203ENST00000389856 NPYP01303 97 aa13.49□□□□□ -0.25
CCDC88C-203ENST00000389856 IGKV3-20P01619 116 aa13.49□□□□□ -0.25
CCDC88C-203ENST00000389856 ASIPP42127 132 aa13.49□□□□□ -0.25
CCDC88C-203ENST00000389856 C9orf66Q5T8R8 295 aa13.49□□□□□ -0.25
CCDC88C-203ENST00000389856 C11orf21Q9P2W6 132 aa13.49□□□□□ -0.25
CCDC88C-203ENST00000389856 CUBNO60494 3623 aa13.49□□□□□ -0.25
CCDC88C-203ENST00000389856 KNCNA6PVL3 124 aa13.48□□□□□ -0.25
CCDC88C-203ENST00000389856 PRSS47A8MTI9 375 aa13.48□□□□□ -0.25
CCDC88C-203ENST00000389856 LOC389332A0A1B0GUA5 103 aa13.47□□□□□ -0.25
CCDC88C-203ENST00000389856 TCAPO15273 167 aa13.47□□□□□ -0.25
CCDC88C-203ENST00000389856 S100A4P26447 101 aaKnown RBP13.47□□□□□ -0.25
CCDC88C-203ENST00000389856 LGALS9BQ3B8N2 356 aa13.47□□□□□ -0.25
CCDC88C-203ENST00000389856 LGALS9CQ6DKI2 356 aa13.47□□□□□ -0.25
CCDC88C-203ENST00000389856 PMCHL2Q9BQD1 86 aa13.47□□□□□ -0.25
CCDC88C-203ENST00000389856 A0A096LNJ9 63 aa13.46□□□□□ -0.25
CCDC88C-203ENST00000389856 ODF3L2Q3SX64 289 aa13.46□□□□□ -0.25
CCDC88C-203ENST00000389856 AMTNQ6UX39 209 aa13.46□□□□□ -0.25
CCDC88C-203ENST00000389856 STHQ8IWL8 128 aa13.46□□□□□ -0.25
CCDC88C-203ENST00000389856 MSRB1Q9NZV6 116 aa13.46□□□□□ -0.25
CCDC88C-203ENST00000389856 MUC21A0A0G2JKD1 596 aa13.46□□□□□ -0.26
CCDC88C-203ENST00000389856 MUC21A0A140T8X8 626 aa13.46□□□□□ -0.26
CCDC88C-203ENST00000389856 TNFRSF6BO95407 300 aa13.46□□□□□ -0.26
CCDC88C-203ENST00000389856 SPINK13Q1W4C9 94 aa13.46□□□□□ -0.26
CCDC88C-203ENST00000389856 MAJINQ3KP22 176 aa13.46□□□□□ -0.26
CCDC88C-203ENST00000389856 MUC21Q5SSG8 566 aa13.46□□□□□ -0.26
CCDC88C-203ENST00000389856 TRAV12-3A0A0B4J271 114 aa13.45□□□□□ -0.26
CCDC88C-203ENST00000389856 BEAN1Q3B7T3 259 aa13.45□□□□□ -0.26
CCDC88C-203ENST00000389856 ANXA2RQ3ZCQ2 193 aa13.45□□□□□ -0.26
CCDC88C-203ENST00000389856 SLC25A34Q6PIV7 304 aa13.45□□□□□ -0.26
CCDC88C-203ENST00000389856 MRAP2Q96G30 205 aa13.45□□□□□ -0.26
CCDC88C-203ENST00000389856 KRTAP24-1Q3LI83 254 aa13.44□□□□□ -0.26
CCDC88C-203ENST00000389856 SPANXN1Q5VSR9 72 aa13.44□□□□□ -0.26
CCDC88C-203ENST00000389856 Q8N8P6 123 aa13.44□□□□□ -0.26
CCDC88C-203ENST00000389856 FCER1GP30273 86 aa13.43□□□□□ -0.26
CCDC88C-203ENST00000389856 SMKR1H3BMG3 65 aa13.42□□□□□ -0.26
CCDC88C-203ENST00000389856 NCR2O95944 276 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 113 ms