RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 HLA-DRB4X5D2U9 266 aa18.7■□□□□ 0.58
SHOX2-201ENST00000389589 M0R381 172 aa18.7■□□□□ 0.58
SHOX2-201ENST00000389589 SPINK13Q1W4C9 94 aa18.7■□□□□ 0.58
SHOX2-201ENST00000389589 PROK1P58294 105 aa18.69■□□□□ 0.58
SHOX2-201ENST00000389589 HSPB8Q9UJY1 196 aa18.69■□□□□ 0.58
SHOX2-201ENST00000389589 TNFRSF6BO95407 300 aa18.69■□□□□ 0.58
SHOX2-201ENST00000389589 TMEM70Q9BUB7 260 aa18.69■□□□□ 0.58
SHOX2-201ENST00000389589 CUBNO60494 3623 aa18.68■□□□□ 0.58
SHOX2-201ENST00000389589 TRAV12-2A0A075B6T6 113 aa18.68■□□□□ 0.58
SHOX2-201ENST00000389589 NXPH4O95158 308 aa18.68■□□□□ 0.58
SHOX2-201ENST00000389589 MAP6D1Q9H9H5 199 aa18.68■□□□□ 0.58
SHOX2-201ENST00000389589 KNCNA6PVL3 124 aa18.67■□□□□ 0.58
SHOX2-201ENST00000389589 CD7P09564 240 aa18.67■□□□□ 0.58
SHOX2-201ENST00000389589 MRAP2Q96G30 205 aa18.67■□□□□ 0.58
SHOX2-201ENST00000389589 NOTCH2Q04721 2471 aa18.67■□□□□ 0.58
SHOX2-201ENST00000389589 H3BMM0 161 aa18.67■□□□□ 0.58
SHOX2-201ENST00000389589 FOSL1P15407 271 aa18.67■□□□□ 0.58
SHOX2-201ENST00000389589 DPH3P1Q9H4G8 78 aa18.67■□□□□ 0.58
SHOX2-201ENST00000389589 VAMP8Q9BV40 100 aa18.66■□□□□ 0.58
SHOX2-201ENST00000389589 NXT2Q9NPJ8 142 aaKnown RBP18.66■□□□□ 0.58
SHOX2-201ENST00000389589 IGHV1OR15-1A0A075B7D0 117 aa18.65■□□□□ 0.58
SHOX2-201ENST00000389589 OR2K2Q8NGT1 345 aa18.65■□□□□ 0.58
SHOX2-201ENST00000389589 ZNF256Q9Y2P7 627 aaPredicted RBP18.65■□□□□ 0.58
SHOX2-201ENST00000389589 OTOGQ6ZRI0 2925 aa18.65■□□□□ 0.58
SHOX2-201ENST00000389589 MUC4Q99102 2169 aa18.65■□□□□ 0.58
SHOX2-201ENST00000389589 CRXO43186 299 aaPredicted RBP18.65■□□□□ 0.58
SHOX2-201ENST00000389589 DDTP30046 118 aa18.65■□□□□ 0.58
SHOX2-201ENST00000389589 AP1S3Q96PC3 154 aa18.65■□□□□ 0.58
SHOX2-201ENST00000389589 KIR2DL5BA0A0G2JN68 375 aa18.64■□□□□ 0.57
SHOX2-201ENST00000389589 KIR2DL5BA0A0G2JPC4 375 aa18.64■□□□□ 0.57
SHOX2-201ENST00000389589 GAS8-AS1O95177 125 aa18.64■□□□□ 0.57
SHOX2-201ENST00000389589 KIR2DL5AQ8N109 375 aa18.64■□□□□ 0.57
SHOX2-201ENST00000389589 WNK1Q9H4A3 2382 aa18.64■□□□□ 0.57
SHOX2-201ENST00000389589 LINC01546A6NGU7 62 aa18.64■□□□□ 0.57
SHOX2-201ENST00000389589 MAP1LC3CQ9BXW4 147 aa18.64■□□□□ 0.57
SHOX2-201ENST00000389589 PRSS47A8MTI9 375 aa18.63■□□□□ 0.57
SHOX2-201ENST00000389589 INAFM1C9JVW0 142 aa18.63■□□□□ 0.57
SHOX2-201ENST00000389589 DEFB125Q8N687 156 aa18.63■□□□□ 0.57
SHOX2-201ENST00000389589 IGHV3-16A0A0C4DH30 117 aa18.62■□□□□ 0.57
SHOX2-201ENST00000389589 SYS1-DBNDD2H3BUS1 97 aa18.62■□□□□ 0.57
SHOX2-201ENST00000389589 SPRY2O43597 315 aa18.62■□□□□ 0.57
SHOX2-201ENST00000389589 GATA1P15976 413 aaPredicted RBP18.62■□□□□ 0.57
SHOX2-201ENST00000389589 LINC00173Q6ZV60 143 aa18.62■□□□□ 0.57
SHOX2-201ENST00000389589 NRACQ8N912 160 aa18.62■□□□□ 0.57
SHOX2-201ENST00000389589 C9orf85Q96MD7 179 aa18.62■□□□□ 0.57
SHOX2-201ENST00000389589 C14orf178Q8N769 122 aaPredicted RBP18.61■□□□□ 0.57
SHOX2-201ENST00000389589 ADARB2-AS1A8MUL3 147 aa18.61■□□□□ 0.57
SHOX2-201ENST00000389589 C20orf144Q9BQM9 153 aa18.61■□□□□ 0.57
SHOX2-201ENST00000389589 A0A096LNJ9 63 aa18.6■□□□□ 0.57
SHOX2-201ENST00000389589 C20orf202A1L168 122 aa18.6■□□□□ 0.57
SHOX2-201ENST00000389589 HBDP02042 147 aa18.6■□□□□ 0.57
SHOX2-201ENST00000389589 PET117Q6UWS5 81 aa18.6■□□□□ 0.57
SHOX2-201ENST00000389589 Q8N1Y9 231 aa18.6■□□□□ 0.57
SHOX2-201ENST00000389589 Q8N8P6 123 aa18.6■□□□□ 0.57
SHOX2-201ENST00000389589 CLUHP3Q96NS8 147 aa18.6■□□□□ 0.57
SHOX2-201ENST00000389589 TRGV11A0A075B6L2 103 aa18.59■□□□□ 0.57
SHOX2-201ENST00000389589 TRAV26-2A0A0B4J265 109 aa18.59■□□□□ 0.57
SHOX2-201ENST00000389589 ZNF747Q9BV97 191 aa18.59■□□□□ 0.57
SHOX2-201ENST00000389589 PAM16Q9Y3D7 125 aa18.59■□□□□ 0.57
SHOX2-201ENST00000389589 ZNF124Q15973 351 aa18.59■□□□□ 0.57
SHOX2-201ENST00000389589 SETD2Q9BYW2 2564 aaPredicted RBP18.58■□□□□ 0.57
SHOX2-201ENST00000389589 RBMY1BA6NDE4 496 aaKnown RBP18.58■□□□□ 0.57
SHOX2-201ENST00000389589 RBMY1EA6NEQ0 496 aaKnown RBP18.58■□□□□ 0.57
SHOX2-201ENST00000389589 RBMY1DP0C7P1 496 aaKnown RBP18.58■□□□□ 0.57
SHOX2-201ENST00000389589 SYT8Q8NBV8 401 aa18.58■□□□□ 0.57
SHOX2-201ENST00000389589 SMIM17P0DL12 118 aa18.58■□□□□ 0.56
SHOX2-201ENST00000389589 FXYD7P58549 80 aa18.58■□□□□ 0.56
SHOX2-201ENST00000389589 NSUN5P1Q3KNT7 163 aa18.58■□□□□ 0.56
SHOX2-201ENST00000389589 POM121L12Q8N7R1 296 aa18.58■□□□□ 0.56
SHOX2-201ENST00000389589 NDUFA11Q86Y39 141 aa18.57■□□□□ 0.56
SHOX2-201ENST00000389589 MDFICQ9P1T7 246 aa18.57■□□□□ 0.56
SHOX2-201ENST00000389589 CMC4P56277 68 aaPredicted RBP18.56■□□□□ 0.56
SHOX2-201ENST00000389589 DEFA6Q01524 100 aa18.56■□□□□ 0.56
SHOX2-201ENST00000389589 ODF3L2Q3SX64 289 aa18.56■□□□□ 0.56
SHOX2-201ENST00000389589 IGLV2-18A0A075B6J9 118 aa18.56■□□□□ 0.56
SHOX2-201ENST00000389589 PPP1R17O96001 155 aa18.56■□□□□ 0.56
SHOX2-201ENST00000389589 MGPP08493 103 aa18.56■□□□□ 0.56
SHOX2-201ENST00000389589 SPATA12Q7Z6I5 190 aa18.56■□□□□ 0.56
SHOX2-201ENST00000389589 KIF25-AS1Q9Y6Z4 181 aa18.56■□□□□ 0.56
SHOX2-201ENST00000389589 SETXQ7Z333 2677 aaKnown RBP18.55■□□□□ 0.56
SHOX2-201ENST00000389589 SAP30O75446 220 aa18.55■□□□□ 0.56
SHOX2-201ENST00000389589 C20orf78Q9BR46 151 aa18.54■□□□□ 0.56
SHOX2-201ENST00000389589 CBY3A6NI87 242 aa18.54■□□□□ 0.56
SHOX2-201ENST00000389589 OR11H12B2RN74 326 aa18.54■□□□□ 0.56
SHOX2-201ENST00000389589 RBMY1A1P0DJD3 496 aaKnown RBP18.54■□□□□ 0.56
SHOX2-201ENST00000389589 RBMY1CP0DJD4 496 aa18.54■□□□□ 0.56
SHOX2-201ENST00000389589 FCER1GP30273 86 aa18.54■□□□□ 0.56
SHOX2-201ENST00000389589 RBMY1FQ15415 496 aaKnown RBP18.54■□□□□ 0.56
SHOX2-201ENST00000389589 SPATA45Q537H7 98 aa18.53■□□□□ 0.56
SHOX2-201ENST00000389589 NDUFAF3Q9BU61 184 aa18.53■□□□□ 0.56
SHOX2-201ENST00000389589 RASL10AQ92737 203 aa18.53■□□□□ 0.56
SHOX2-201ENST00000389589 TRAV9-2A0A087WT02 112 aa18.52■□□□□ 0.56
SHOX2-201ENST00000389589 ATOH7Q8N100 152 aa18.52■□□□□ 0.56
SHOX2-201ENST00000389589 NSD1Q96L73 2696 aaPredicted RBP18.52■□□□□ 0.56
SHOX2-201ENST00000389589 IGLV1-51P01701 117 aa18.51■□□□□ 0.55
SHOX2-201ENST00000389589 LINC00315P59091 139 aa18.51■□□□□ 0.55
SHOX2-201ENST00000389589 ZNF705AQ6ZN79 300 aaPredicted RBP18.51■□□□□ 0.55
SHOX2-201ENST00000389589 KRTAP10-3P60369 221 aa18.51■□□□□ 0.55
SHOX2-201ENST00000389589 LINC01545Q5VT33 79 aa18.51■□□□□ 0.55
SHOX2-201ENST00000389589 STHQ8IWL8 128 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms