RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 IGKV3-7A0A075B6H7 116 aa16.19■□□□□ 0.18
TRIM54-202ENST00000380075 HOXA3O43365 443 aaPredicted RBP16.19■□□□□ 0.18
TRIM54-202ENST00000380075 S100A4P26447 101 aaKnown RBP16.19■□□□□ 0.18
TRIM54-202ENST00000380075 RNF152Q8N8N0 203 aa16.19■□□□□ 0.18
TRIM54-202ENST00000380075 ESM1Q9NQ30 184 aa16.19■□□□□ 0.18
TRIM54-202ENST00000380075 UBE2E2Q96LR5 201 aa16.18■□□□□ 0.18
TRIM54-202ENST00000380075 KLLNB2CW77 178 aa16.18■□□□□ 0.18
TRIM54-202ENST00000380075 F6UB75 175 aa16.18■□□□□ 0.18
TRIM54-202ENST00000380075 J3KRW8 73 aa16.18■□□□□ 0.18
TRIM54-202ENST00000380075 RNASE4P34096 147 aaKnown RBP16.18■□□□□ 0.18
TRIM54-202ENST00000380075 ANXA2RQ3ZCQ2 193 aa16.18■□□□□ 0.18
TRIM54-202ENST00000380075 ODF3Q96PU9 254 aa16.18■□□□□ 0.18
TRIM54-202ENST00000380075 PMCHL2Q9BQD1 86 aa16.18■□□□□ 0.18
TRIM54-202ENST00000380075 MCRIP2Q9BUT9 160 aaKnown RBP16.18■□□□□ 0.18
TRIM54-202ENST00000380075 GAS8-AS1O95177 125 aa16.17■□□□□ 0.18
TRIM54-202ENST00000380075 HILS1P60008 231 aa16.17■□□□□ 0.18
TRIM54-202ENST00000380075 C10orf99Q6UWK7 81 aa16.17■□□□□ 0.18
TRIM54-202ENST00000380075 NRACQ8N912 160 aa16.17■□□□□ 0.18
TRIM54-202ENST00000380075 IGLV2-18A0A075B6J9 118 aa16.17■□□□□ 0.18
TRIM54-202ENST00000380075 DNAJC9-AS1A6NH13 148 aa16.16■□□□□ 0.18
TRIM54-202ENST00000380075 LEPP41159 167 aa16.16■□□□□ 0.18
TRIM54-202ENST00000380075 DEFB1P60022 68 aa16.16■□□□□ 0.18
TRIM54-202ENST00000380075 PRIMA1Q86XR5 153 aa16.16■□□□□ 0.18
TRIM54-202ENST00000380075 PHLDA3Q9Y5J5 127 aa16.16■□□□□ 0.18
TRIM54-202ENST00000380075 PSMG4Q5JS54 123 aa16.15■□□□□ 0.18
TRIM54-202ENST00000380075 OR1N2Q8NGR9 330 aa16.15■□□□□ 0.18
TRIM54-202ENST00000380075 GATA1P15976 413 aaPredicted RBP16.15■□□□□ 0.18
TRIM54-202ENST00000380075 EDN2P20800 178 aa16.15■□□□□ 0.18
TRIM54-202ENST00000380075 SNRPD3P62318 126 aaKnown RBP16.15■□□□□ 0.18
TRIM54-202ENST00000380075 DPH3P1Q9H4G8 78 aa16.15■□□□□ 0.18
TRIM54-202ENST00000380075 Q8N2B8 174 aa16.14■□□□□ 0.17
TRIM54-202ENST00000380075 COX8AP10176 69 aa16.13■□□□□ 0.17
TRIM54-202ENST00000380075 FXYD7P58549 80 aa16.13■□□□□ 0.17
TRIM54-202ENST00000380075 STPG4Q8N801 248 aa16.13■□□□□ 0.17
TRIM54-202ENST00000380075 WFDC3Q8IUB2 231 aa16.13■□□□□ 0.17
TRIM54-202ENST00000380075 K7EQG2 157 aa16.12■□□□□ 0.17
TRIM54-202ENST00000380075 M0R381 172 aa16.12■□□□□ 0.17
TRIM54-202ENST00000380075 NXPH4O95158 308 aa16.12■□□□□ 0.17
TRIM54-202ENST00000380075 HINT1P49773 126 aaPredicted RBP16.11■□□□□ 0.17
TRIM54-202ENST00000380075 LAGE3Q14657 143 aa16.11■□□□□ 0.17
TRIM54-202ENST00000380075 TMEM86BQ8N661 226 aa16.11■□□□□ 0.17
TRIM54-202ENST00000380075 AP1S3Q96PC3 154 aa16.11■□□□□ 0.17
TRIM54-202ENST00000380075 JMJD8Q96S16 334 aa16.11■□□□□ 0.17
TRIM54-202ENST00000380075 IGHV4OR15-8A0A075B7B6 117 aa16.11■□□□□ 0.17
TRIM54-202ENST00000380075 A0A087WW49 117 aa16.11■□□□□ 0.17
TRIM54-202ENST00000380075 ATP5LO75964 103 aa16.11■□□□□ 0.17
TRIM54-202ENST00000380075 PPP1R17O96001 155 aa16.11■□□□□ 0.17
TRIM54-202ENST00000380075 RNASE3P12724 160 aaKnown RBP16.11■□□□□ 0.17
TRIM54-202ENST00000380075 SYNJ2BPP57105 145 aa16.11■□□□□ 0.17
TRIM54-202ENST00000380075 FAM159AQ6UWV7 190 aa16.11■□□□□ 0.17
TRIM54-202ENST00000380075 C20orf78Q9BR46 151 aa16.11■□□□□ 0.17
TRIM54-202ENST00000380075 K7EMI3 77 aa16.1■□□□□ 0.17
TRIM54-202ENST00000380075 ZNF25P17030 456 aaPredicted RBP16.1■□□□□ 0.17
TRIM54-202ENST00000380075 GAGE1Q13065 139 aa16.1■□□□□ 0.17
TRIM54-202ENST00000380075 TMEM158Q8WZ71 300 aa16.1■□□□□ 0.17
TRIM54-202ENST00000380075 TRAV26-2A0A0B4J265 109 aa16.09■□□□□ 0.17
TRIM54-202ENST00000380075 HOXD3P31249 432 aaPredicted RBP16.09■□□□□ 0.17
TRIM54-202ENST00000380075 A0A0J9YX75 114 aa16.09■□□□□ 0.17
TRIM54-202ENST00000380075 C7orf71A4D174 169 aa16.09■□□□□ 0.17
TRIM54-202ENST00000380075 KIR3DS1Q14943 382 aa16.09■□□□□ 0.17
TRIM54-202ENST00000380075 C12orf54Q6X4T0 127 aa16.09■□□□□ 0.17
TRIM54-202ENST00000380075 SMIM2Q9BVW6 85 aa16.09■□□□□ 0.17
TRIM54-202ENST00000380075 GNRH2O43555 120 aa16.08■□□□□ 0.16
TRIM54-202ENST00000380075 ZNF688P0C7X2 276 aa16.08■□□□□ 0.16
TRIM54-202ENST00000380075 DUSP14O95147 198 aaKnown RBP16.07■□□□□ 0.16
TRIM54-202ENST00000380075 RNASE1P07998 156 aaKnown RBP16.07■□□□□ 0.16
TRIM54-202ENST00000380075 TFPI2P48307 235 aa16.07■□□□□ 0.16
TRIM54-202ENST00000380075 POM121L12Q8N7R1 296 aa16.07■□□□□ 0.16
TRIM54-202ENST00000380075 C18orf15Q96N68 181 aa16.07■□□□□ 0.16
TRIM54-202ENST00000380075 TMEM208Q9BTX3 173 aa16.07■□□□□ 0.16
TRIM54-202ENST00000380075 SELENOKQ9Y6D0 94 aa16.07■□□□□ 0.16
TRIM54-202ENST00000380075 DLEU1O43261 78 aa16.06■□□□□ 0.16
TRIM54-202ENST00000380075 SMIM17P0DL12 118 aa16.06■□□□□ 0.16
TRIM54-202ENST00000380075 SUMO2P61956 95 aaKnown RBP16.06■□□□□ 0.16
TRIM54-202ENST00000380075 ORMDL2Q53FV1 153 aa16.06■□□□□ 0.16
TRIM54-202ENST00000380075 C14orf178Q8N769 122 aaPredicted RBP16.06■□□□□ 0.16
TRIM54-202ENST00000380075 ZMAT4Q9H898 229 aa16.06■□□□□ 0.16
TRIM54-202ENST00000380075 PRSS1P07477 247 aa16.05■□□□□ 0.16
TRIM54-202ENST00000380075 G0S2P27469 103 aa16.05■□□□□ 0.16
TRIM54-202ENST00000380075 ODF1Q14990 250 aa16.05■□□□□ 0.16
TRIM54-202ENST00000380075 ANKRD39Q53RE8 183 aa16.05■□□□□ 0.16
TRIM54-202ENST00000380075 RASL10AQ92737 203 aa16.05■□□□□ 0.16
TRIM54-202ENST00000380075 FBN1P35555 2871 aaKnown RBP16.04■□□□□ 0.16
TRIM54-202ENST00000380075 C2CD3Q4AC94 2353 aa16.04■□□□□ 0.16
TRIM54-202ENST00000380075 ATRQ13535 2644 aa16.04■□□□□ 0.16
TRIM54-202ENST00000380075 MPV17L2Q567V2 206 aa16.04■□□□□ 0.16
TRIM54-202ENST00000380075 FOXI2Q6ZQN5 318 aa16.04■□□□□ 0.16
TRIM54-202ENST00000380075 NUDT3O95989 172 aa16.03■□□□□ 0.16
TRIM54-202ENST00000380075 FGF6P10767 208 aa16.03■□□□□ 0.16
TRIM54-202ENST00000380075 DKK2Q9UBU2 259 aa16.03■□□□□ 0.16
TRIM54-202ENST00000380075 TP73-AS1Q9UF72 201 aa16.03■□□□□ 0.16
TRIM54-202ENST00000380075 TRAV12-3A0A0B4J271 114 aa16.02■□□□□ 0.16
TRIM54-202ENST00000380075 MGPP08493 103 aa16.02■□□□□ 0.16
TRIM54-202ENST00000380075 CDKN1BP46527 198 aa16.02■□□□□ 0.16
TRIM54-202ENST00000380075 BVES-AS1Q5T3Y7 98 aa16.02■□□□□ 0.16
TRIM54-202ENST00000380075 BOD1L2Q8IYS8 172 aa16.02■□□□□ 0.16
TRIM54-202ENST00000380075 ORAOV1Q8WV07 137 aa16.02■□□□□ 0.16
TRIM54-202ENST00000380075 TRAV2A0A0B4J234 112 aa16.02■□□□□ 0.15
TRIM54-202ENST00000380075 SIVA1O15304 175 aa16.02■□□□□ 0.15
TRIM54-202ENST00000380075 CD7P09564 240 aa16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms