RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 NMSQ5H8A3 153 aa6.38□□□□□ -1.39
HMGB1-203ENST00000341423 Q6ZTC4 211 aa6.38□□□□□ -1.39
HMGB1-203ENST00000341423 FOCADQ5VW36 1801 aa6.38□□□□□ -1.39
HMGB1-203ENST00000341423 MYMXA0A1B0GTQ4 84 aa6.37□□□□□ -1.39
HMGB1-203ENST00000341423 HMSDA8MTL9 139 aa6.37□□□□□ -1.39
HMGB1-203ENST00000341423 J3QR89 54 aa6.37□□□□□ -1.39
HMGB1-203ENST00000341423 CENPWQ5EE01 88 aa6.37□□□□□ -1.39
HMGB1-203ENST00000341423 HIST2H2BDQ6DRA6 164 aa6.37□□□□□ -1.39
HMGB1-203ENST00000341423 DNAJC30Q96LL9 226 aa6.37□□□□□ -1.39
HMGB1-203ENST00000341423 PLXND1Q9Y4D7 1925 aa6.37□□□□□ -1.39
HMGB1-203ENST00000341423 C2orf16Q68DN1 1984 aa6.37□□□□□ -1.39
HMGB1-203ENST00000341423 PHF3Q92576 2039 aaKnown RBP6.37□□□□□ -1.39
HMGB1-203ENST00000341423 A0A0G2JRQ6 117 aa6.37□□□□□ -1.39
HMGB1-203ENST00000341423 IGLV1-51P01701 117 aa6.37□□□□□ -1.39
HMGB1-203ENST00000341423 MIAQ16674 131 aa6.37□□□□□ -1.39
HMGB1-203ENST00000341423 KRTAP21-3Q3LHN1 58 aa6.37□□□□□ -1.39
HMGB1-203ENST00000341423 POLR3KQ9Y2Y1 108 aaPredicted RBP6.37□□□□□ -1.39
HMGB1-203ENST00000341423 SRCAPQ6ZRS2 3230 aa6.37□□□□□ -1.39
HMGB1-203ENST00000341423 RPL28P46779 137 aaKnown RBP6.36□□□□□ -1.39
HMGB1-203ENST00000341423 SPATA12Q7Z6I5 190 aa6.36□□□□□ -1.39
HMGB1-203ENST00000341423 TRAV4A0A0B4J268 109 aa6.36□□□□□ -1.39
HMGB1-203ENST00000341423 GUSBP1Q15486 140 aa6.36□□□□□ -1.39
HMGB1-203ENST00000341423 SUMO4Q6EEV6 95 aa6.36□□□□□ -1.39
HMGB1-203ENST00000341423 MARVELD1Q9BSK0 173 aa6.36□□□□□ -1.39
HMGB1-203ENST00000341423 LENEPQ9Y5L5 61 aa6.36□□□□□ -1.39
HMGB1-203ENST00000341423 GZMMP51124 257 aa6.36□□□□□ -1.39
HMGB1-203ENST00000341423 MEF2BQ02080 365 aaPredicted RBP6.36□□□□□ -1.39
HMGB1-203ENST00000341423 SFTA2Q6UW10 78 aa6.36□□□□□ -1.39
HMGB1-203ENST00000341423 C16orf54Q6UWD8 224 aa6.36□□□□□ -1.39
HMGB1-203ENST00000341423 LEPROTO15243 131 aa6.36□□□□□ -1.39
HMGB1-203ENST00000341423 SPRNQ5BIV9 151 aa6.36□□□□□ -1.39
HMGB1-203ENST00000341423 TMEM242Q9NWH2 141 aa6.36□□□□□ -1.39
HMGB1-203ENST00000341423 ANK1P16157 1881 aa6.35□□□□□ -1.39
HMGB1-203ENST00000341423 A0A1B0GWB2 263 aa6.35□□□□□ -1.39
HMGB1-203ENST00000341423 HIGD2BQ4VC39 106 aa6.35□□□□□ -1.39
HMGB1-203ENST00000341423 A8MWP6 167 aa6.35□□□□□ -1.39
HMGB1-203ENST00000341423 IGKV1-17P01599 117 aa6.35□□□□□ -1.39
HMGB1-203ENST00000341423 C5orf38Q86SI9 138 aa6.35□□□□□ -1.39
HMGB1-203ENST00000341423 PSMG3Q9BT73 122 aaPredicted RBP6.35□□□□□ -1.39
HMGB1-203ENST00000341423 GAGE10A6NGK3 116 aa6.35□□□□□ -1.39
HMGB1-203ENST00000341423 SMIM13P0DJ93 91 aa6.35□□□□□ -1.39
HMGB1-203ENST00000341423 SBSPONQ8IVN8 264 aa6.35□□□□□ -1.39
HMGB1-203ENST00000341423 SFRP2Q96HF1 295 aa6.35□□□□□ -1.39
HMGB1-203ENST00000341423 GAGE12HA6NDE8 117 aa6.35□□□□□ -1.39
HMGB1-203ENST00000341423 Q6Q795 121 aa6.35□□□□□ -1.39
HMGB1-203ENST00000341423 PLEKHB2Q96CS7 222 aa6.35□□□□□ -1.39
HMGB1-203ENST00000341423 DSCR8Q96T75 97 aa6.35□□□□□ -1.39
HMGB1-203ENST00000341423 NDUFA3O95167 84 aa6.34□□□□□ -1.39
HMGB1-203ENST00000341423 STAG3L2P0CL84 134 aa6.34□□□□□ -1.39
HMGB1-203ENST00000341423 FAM19A1Q7Z5A9 133 aa6.34□□□□□ -1.39
HMGB1-203ENST00000341423 C18orf15Q96N68 181 aa6.34□□□□□ -1.39
HMGB1-203ENST00000341423 IGLV11-55A0A075B6I3 123 aa6.34□□□□□ -1.39
HMGB1-203ENST00000341423 PRB4P10163 310 aaPredicted RBP6.34□□□□□ -1.39
HMGB1-203ENST00000341423 BCL2P10415 239 aa6.34□□□□□ -1.39
HMGB1-203ENST00000341423 TRBV20-1A0A075B6N2 111 aa6.34□□□□□ -1.39
HMGB1-203ENST00000341423 TCRAP04437 139 aa6.34□□□□□ -1.39
HMGB1-203ENST00000341423 PSMB8P28062 276 aa6.34□□□□□ -1.39
HMGB1-203ENST00000341423 SYCNQ0VAF6 134 aa6.34□□□□□ -1.39
HMGB1-203ENST00000341423 C10orf99Q6UWK7 81 aa6.34□□□□□ -1.39
HMGB1-203ENST00000341423 IGHV1-58A0A0C4DH39 117 aa6.34□□□□□ -1.4
HMGB1-203ENST00000341423 C22orf34Q6ZV56 151 aa6.34□□□□□ -1.4
HMGB1-203ENST00000341423 TEP1Q99973 2627 aaKnown RBP6.34□□□□□ -1.4
HMGB1-203ENST00000341423 TRAV8-4A0A0B4J246 113 aa6.33□□□□□ -1.4
HMGB1-203ENST00000341423 C9orf47Q6ZRZ4 202 aa6.33□□□□□ -1.4
HMGB1-203ENST00000341423 DEFB104AQ8WTQ1 72 aa6.33□□□□□ -1.4
HMGB1-203ENST00000341423 TNRC6AQ8NDV7 1962 aaKnown RBP6.33□□□□□ -1.4
HMGB1-203ENST00000341423 K7EP13 123 aa6.33□□□□□ -1.4
HMGB1-203ENST00000341423 SH2D1AO60880 128 aa6.33□□□□□ -1.4
HMGB1-203ENST00000341423 CRYGCP07315 174 aa6.33□□□□□ -1.4
HMGB1-203ENST00000341423 CDIP1Q9H305 208 aa6.33□□□□□ -1.4
HMGB1-203ENST00000341423 NIT2Q9NQR4 276 aa6.33□□□□□ -1.4
HMGB1-203ENST00000341423 ANKRD36A6QL64 1941 aa6.33□□□□□ -1.4
HMGB1-203ENST00000341423 TRBV7-3A0A075B6L6 115 aa6.33□□□□□ -1.4
HMGB1-203ENST00000341423 WFDC10AQ9H1F0 79 aa6.33□□□□□ -1.4
HMGB1-203ENST00000341423 TMEM75Q8N9X5 138 aa6.32□□□□□ -1.4
HMGB1-203ENST00000341423 WDR83OSQ9Y284 106 aa6.32□□□□□ -1.4
HMGB1-203ENST00000341423 PAM16Q9Y3D7 125 aa6.32□□□□□ -1.4
HMGB1-203ENST00000341423 LOC107984640A0A0U1RRK4 108 aa6.32□□□□□ -1.4
HMGB1-203ENST00000341423 CXCL3P19876 107 aa6.32□□□□□ -1.4
HMGB1-203ENST00000341423 DEFB105AQ8NG35 78 aa6.32□□□□□ -1.4
HMGB1-203ENST00000341423 HIST1H4GQ99525 98 aa6.32□□□□□ -1.4
HMGB1-203ENST00000341423 TRBV10-1A0A0K0K1A3 114 aa6.32□□□□□ -1.4
HMGB1-203ENST00000341423 C15orf65H3BRN8 121 aa6.32□□□□□ -1.4
HMGB1-203ENST00000341423 HERVK_113P63121 156 aa6.32□□□□□ -1.4
HMGB1-203ENST00000341423 A0A0J9YX75 114 aa6.32□□□□□ -1.4
HMGB1-203ENST00000341423 SDHAF1A6NFY7 115 aa6.32□□□□□ -1.4
HMGB1-203ENST00000341423 FGF6P10767 208 aa6.32□□□□□ -1.4
HMGB1-203ENST00000341423 CXCL5P42830 114 aa6.32□□□□□ -1.4
HMGB1-203ENST00000341423 LGALS9BQ3B8N2 356 aa6.32□□□□□ -1.4
HMGB1-203ENST00000341423 CCDC140Q96MF4 163 aa6.32□□□□□ -1.4
HMGB1-203ENST00000341423 A0A1W2PPR1 153 aa6.32□□□□□ -1.4
HMGB1-203ENST00000341423 IGLC1P0CG04 106 aa6.32□□□□□ -1.4
HMGB1-203ENST00000341423 DIRC1Q969H9 104 aa6.32□□□□□ -1.4
HMGB1-203ENST00000341423 SCRT2Q9NQ03 307 aa6.32□□□□□ -1.4
HMGB1-203ENST00000341423 V9GYH0 126 aa6.32□□□□□ -1.4
HMGB1-203ENST00000341423 TRBV12-3P01733 135 aa6.31□□□□□ -1.4
HMGB1-203ENST00000341423 WT1-ASQ06250 92 aa6.31□□□□□ -1.4
HMGB1-203ENST00000341423 DENND4AQ7Z401 1863 aa6.31□□□□□ -1.4
HMGB1-203ENST00000341423 REG3AQ06141 175 aa6.31□□□□□ -1.4
HMGB1-203ENST00000341423 C11orf53Q8IXP5 236 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms