RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 COX8CQ7Z4L0 72 aa12.01□□□□□ -0.49
HDDC3-201ENST00000330334 NHLRC2Q8NBF2 726 aa12.01□□□□□ -0.49
HDDC3-201ENST00000330334 CYTL1Q9NRR1 136 aa12.01□□□□□ -0.49
HDDC3-201ENST00000330334 IGKV3D-20A0A0C4DH25 116 aa12□□□□□ -0.49
HDDC3-201ENST00000330334 PGPEP1LA6NFU8 196 aa12□□□□□ -0.49
HDDC3-201ENST00000330334 FAM74A7A6NL05 159 aa12□□□□□ -0.49
HDDC3-201ENST00000330334 PEX7O00628 323 aa12□□□□□ -0.49
HDDC3-201ENST00000330334 MGST1P10620 155 aaKnown RBP12□□□□□ -0.49
HDDC3-201ENST00000330334 ZNF506Q5JVG8 444 aa12□□□□□ -0.49
HDDC3-201ENST00000330334 MAPKAPK5-AS1Q8N8E1 139 aa12□□□□□ -0.49
HDDC3-201ENST00000330334 ARL2-SNX15V9GYD0 113 aa12□□□□□ -0.49
HDDC3-201ENST00000330334 TRAV34A0A0B4J273 112 aa11.99□□□□□ -0.49
HDDC3-201ENST00000330334 IGHV3-38A0A0C4DH36 116 aa11.99□□□□□ -0.49
HDDC3-201ENST00000330334 CRYGDP07320 174 aa11.99□□□□□ -0.49
HDDC3-201ENST00000330334 LINC01556Q5JQF7 62 aa11.99□□□□□ -0.49
HDDC3-201ENST00000330334 ZFP2Q6ZN57 461 aa11.99□□□□□ -0.49
HDDC3-201ENST00000330334 Q8N1X5 172 aa11.99□□□□□ -0.49
HDDC3-201ENST00000330334 TCEAL7Q9BRU2 100 aa11.99□□□□□ -0.49
HDDC3-201ENST00000330334 ZFP30Q9Y2G7 519 aa11.99□□□□□ -0.49
HDDC3-201ENST00000330334 A0A087WTM6 91 aa11.98□□□□□ -0.49
HDDC3-201ENST00000330334 A8MWV9 139 aa11.98□□□□□ -0.49
HDDC3-201ENST00000330334 ARPC5O15511 151 aa11.98□□□□□ -0.49
HDDC3-201ENST00000330334 FHITP49789 147 aa11.98□□□□□ -0.49
HDDC3-201ENST00000330334 UBE2G2P60604 165 aa11.98□□□□□ -0.49
HDDC3-201ENST00000330334 DNLZQ5SXM8 178 aa11.98□□□□□ -0.49
HDDC3-201ENST00000330334 IL36BQ9NZH7 164 aa11.98□□□□□ -0.49
HDDC3-201ENST00000330334 TRAV8-6A0A0B4J262 113 aa11.97□□□□□ -0.49
HDDC3-201ENST00000330334 S100A4P26447 101 aaKnown RBP11.97□□□□□ -0.49
HDDC3-201ENST00000330334 FGF8P55075 233 aaPredicted RBP11.97□□□□□ -0.49
HDDC3-201ENST00000330334 Q86TA4 180 aa11.97□□□□□ -0.49
HDDC3-201ENST00000330334 TRBV6-1A0A0K0K1D8 114 aa11.96□□□□□ -0.49
HDDC3-201ENST00000330334 MAP1LC3B2A6NCE7 125 aa11.96□□□□□ -0.49
HDDC3-201ENST00000330334 ASIPP42127 132 aa11.96□□□□□ -0.49
HDDC3-201ENST00000330334 CRIP1P50238 77 aa11.96□□□□□ -0.49
HDDC3-201ENST00000330334 ZNF345Q14585 488 aa11.96□□□□□ -0.49
HDDC3-201ENST00000330334 LELP1Q5T871 98 aa11.96□□□□□ -0.49
HDDC3-201ENST00000330334 STOML3Q8TAV4 291 aa11.96□□□□□ -0.49
HDDC3-201ENST00000330334 FMC1Q96HJ9 113 aa11.96□□□□□ -0.49
HDDC3-201ENST00000330334 MAP1LC3BQ9GZQ8 125 aa11.96□□□□□ -0.49
HDDC3-201ENST00000330334 GTSF1LQ9H1H1 148 aa11.96□□□□□ -0.49
HDDC3-201ENST00000330334 IGHV3-73A0A0B4J1V6 119 aa11.95□□□□□ -0.5
HDDC3-201ENST00000330334 IBA57-AS1B1ANH7 110 aa11.95□□□□□ -0.5
HDDC3-201ENST00000330334 ATP6V0E2Q8NHE4 81 aa11.95□□□□□ -0.5
HDDC3-201ENST00000330334 PARLQ9H300 379 aa11.95□□□□□ -0.5
HDDC3-201ENST00000330334 B4DEV8 164 aa11.94□□□□□ -0.5
HDDC3-201ENST00000330334 KRBOX1C9JBD0 128 aa11.94□□□□□ -0.5
HDDC3-201ENST00000330334 OR10J3Q5JRS4 329 aa11.94□□□□□ -0.5
HDDC3-201ENST00000330334 UFSP1Q6NVU6 142 aa11.94□□□□□ -0.5
HDDC3-201ENST00000330334 KCNRGQ8N5I3 272 aa11.94□□□□□ -0.5
HDDC3-201ENST00000330334 ZC2HC1AQ96GY0 325 aa11.94□□□□□ -0.5
HDDC3-201ENST00000330334 HMSDA8MTL9 139 aa11.93□□□□□ -0.5
HDDC3-201ENST00000330334 SEC11BP0C7V7 166 aa11.93□□□□□ -0.5
HDDC3-201ENST00000330334 ZNF674Q2M3X9 581 aa11.93□□□□□ -0.5
HDDC3-201ENST00000330334 LGALSLQ3ZCW2 172 aaPredicted RBP11.93□□□□□ -0.5
HDDC3-201ENST00000330334 FAM162BQ5T6X4 162 aa11.93□□□□□ -0.5
HDDC3-201ENST00000330334 Q6ZSN1 163 aa11.93□□□□□ -0.5
HDDC3-201ENST00000330334 SCRT2Q9NQ03 307 aa11.93□□□□□ -0.5
HDDC3-201ENST00000330334 UMAD1C9J7I0 102 aa11.92□□□□□ -0.5
HDDC3-201ENST00000330334 LTAP01374 205 aa11.92□□□□□ -0.5
HDDC3-201ENST00000330334 LINC00694P0DN24 101 aa11.92□□□□□ -0.5
HDDC3-201ENST00000330334 UBE2G1P62253 170 aa11.92□□□□□ -0.5
HDDC3-201ENST00000330334 DMRTA1Q5VZB9 504 aa11.92□□□□□ -0.5
HDDC3-201ENST00000330334 SYT8Q8NBV8 401 aa11.92□□□□□ -0.5
HDDC3-201ENST00000330334 MBD3L1Q8WWY6 194 aa11.92□□□□□ -0.5
HDDC3-201ENST00000330334 RHODO00212 210 aa11.91□□□□□ -0.5
HDDC3-201ENST00000330334 SH2D1AO60880 128 aa11.91□□□□□ -0.5
HDDC3-201ENST00000330334 ARMS2P0C7Q2 107 aa11.91□□□□□ -0.5
HDDC3-201ENST00000330334 CST9LP1Q5W188 147 aa11.91□□□□□ -0.5
HDDC3-201ENST00000330334 A0A0D9SG52 128 aa11.9□□□□□ -0.5
HDDC3-201ENST00000330334 SMLR1H3BR10 107 aa11.9□□□□□ -0.5
HDDC3-201ENST00000330334 S100A9P06702 114 aaKnown RBP11.9□□□□□ -0.5
HDDC3-201ENST00000330334 LAGE3Q14657 143 aa11.9□□□□□ -0.5
HDDC3-201ENST00000330334 LINC01559Q495D7 138 aa11.9□□□□□ -0.5
HDDC3-201ENST00000330334 A0A087WWC5 75 aa11.89□□□□□ -0.51
HDDC3-201ENST00000330334 LRCOL1A6NCL2 159 aa11.89□□□□□ -0.51
HDDC3-201ENST00000330334 H3BVH4 76 aa11.89□□□□□ -0.51
HDDC3-201ENST00000330334 OR11H4Q8NGC9 324 aa11.89□□□□□ -0.51
HDDC3-201ENST00000330334 SFT2D1Q8WV19 159 aa11.89□□□□□ -0.51
HDDC3-201ENST00000330334 SAMD10Q9BYL1 202 aa11.89□□□□□ -0.51
HDDC3-201ENST00000330334 JPT2Q9H910 190 aa11.89□□□□□ -0.51
HDDC3-201ENST00000330334 M0R036 132 aa11.88□□□□□ -0.51
HDDC3-201ENST00000330334 PSCAO43653 123 aa11.88□□□□□ -0.51
HDDC3-201ENST00000330334 PAGE4O60829 102 aa11.88□□□□□ -0.51
HDDC3-201ENST00000330334 FUSP35637 526 aaKnown RBP eCLIP11.88□□□□□ -0.51
HDDC3-201ENST00000330334 XGP55808 180 aa11.88□□□□□ -0.51
HDDC3-201ENST00000330334 NTN5Q8WTR8 489 aaPredicted RBP11.88□□□□□ -0.51
HDDC3-201ENST00000330334 SFRP2Q96HF1 295 aa11.88□□□□□ -0.51
HDDC3-201ENST00000330334 PHLDA3Q9Y5J5 127 aa11.88□□□□□ -0.51
HDDC3-201ENST00000330334 GAGE12JA6NER3 117 aa11.87□□□□□ -0.51
HDDC3-201ENST00000330334 AKR1C3P42330 323 aa11.87□□□□□ -0.51
HDDC3-201ENST00000330334 KRTAP10-1P60331 282 aa11.87□□□□□ -0.51
HDDC3-201ENST00000330334 GAGE1Q13065 139 aa11.87□□□□□ -0.51
HDDC3-201ENST00000330334 GAGE4Q13068 117 aa11.87□□□□□ -0.51
HDDC3-201ENST00000330334 GAGE5Q13069 117 aa11.87□□□□□ -0.51
HDDC3-201ENST00000330334 GAGE13Q4V321 117 aa11.87□□□□□ -0.51
HDDC3-201ENST00000330334 GRIFINA4D1Z8 144 aa11.86□□□□□ -0.51
HDDC3-201ENST00000330334 BCL2L11O43521 198 aa11.86□□□□□ -0.51
HDDC3-201ENST00000330334 IGHV3-30P01768 117 aa11.86□□□□□ -0.51
HDDC3-201ENST00000330334 IGHV3-33P01772 117 aa11.86□□□□□ -0.51
HDDC3-201ENST00000330334 IGHV3-30-3P0DP02 117 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms