RNA–Protein interactions for RNA: ENST00000325404.2

SOX2-201, Transcript of SRY-box 2, humanhuman

APPRIS P1 BASIC

Gene SOX2, Length 2,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2-201ENST00000325404 TTTY13Q9BZ97 58 aa15.02■□□□□ -0
SOX2-201ENST00000325404 LINC00527Q9UJ94 153 aa15.02■□□□□ -0
SOX2-201ENST00000325404 PHLDA3Q9Y5J5 127 aa15.02■□□□□ -0
SOX2-201ENST00000325404 A6NDX4 124 aa15.02□□□□□ -0.01
SOX2-201ENST00000325404 NXPH4O95158 308 aa15.02□□□□□ -0.01
SOX2-201ENST00000325404 TRBV12-3P01733 135 aa15.02□□□□□ -0.01
SOX2-201ENST00000325404 RPL32P62910 135 aaKnown RBP15.01□□□□□ -0.01
SOX2-201ENST00000325404 MSMBP08118 114 aa15.01□□□□□ -0.01
SOX2-201ENST00000325404 ANXA2RQ3ZCQ2 193 aa15.01□□□□□ -0.01
SOX2-201ENST00000325404 SAMD13Q5VXD3 122 aa15.01□□□□□ -0.01
SOX2-201ENST00000325404 NEXN-AS1Q8NBZ9 246 aa15.01□□□□□ -0.01
SOX2-201ENST00000325404 SCGB3A1Q96QR1 104 aa15.01□□□□□ -0.01
SOX2-201ENST00000325404 LINC01549A6NIU2 74 aa15□□□□□ -0.01
SOX2-201ENST00000325404 CRYBG3Q68DQ2 2970 aa15□□□□□ -0.01
SOX2-201ENST00000325404 MAPKAPK5-AS1Q8N8E1 139 aa15□□□□□ -0.01
SOX2-201ENST00000325404 NAA38Q9BRA0 125 aaKnown RBP15□□□□□ -0.01
SOX2-201ENST00000325404 IGHV3OR16-10A0A075B7F0 116 aa14.99□□□□□ -0.01
SOX2-201ENST00000325404 G3V4G9 280 aa14.99□□□□□ -0.01
SOX2-201ENST00000325404 TM4SF20Q53R12 229 aa14.99□□□□□ -0.01
SOX2-201ENST00000325404 ZNF580Q9UK33 172 aa14.99□□□□□ -0.01
SOX2-201ENST00000325404 IGLV1-40P01703 118 aa14.99□□□□□ -0.01
SOX2-201ENST00000325404 BRD3OSQ6XYD6 125 aa14.99□□□□□ -0.01
SOX2-201ENST00000325404 RNF223E7ERA6 249 aa14.98□□□□□ -0.01
SOX2-201ENST00000325404 B4DSR2 109 aa14.98□□□□□ -0.01
SOX2-201ENST00000325404 K7EMT4 169 aa14.98□□□□□ -0.01
SOX2-201ENST00000325404 C14orf178Q8N769 122 aaPredicted RBP14.98□□□□□ -0.01
SOX2-201ENST00000325404 IGHV4OR15-8A0A075B7B6 117 aa14.97□□□□□ -0.01
SOX2-201ENST00000325404 A0A087WW49 117 aa14.97□□□□□ -0.01
SOX2-201ENST00000325404 E9PLD3 99 aa14.97□□□□□ -0.01
SOX2-201ENST00000325404 RNASE3P12724 160 aaKnown RBP14.97□□□□□ -0.01
SOX2-201ENST00000325404 RNASE4P34096 147 aaKnown RBP14.97□□□□□ -0.01
SOX2-201ENST00000325404 RHPN1-AS1Q9BWJ2 59 aa14.97□□□□□ -0.01
SOX2-201ENST00000325404 DAZ1Q9NQZ3 744 aaKnown RBP14.97□□□□□ -0.01
SOX2-201ENST00000325404 NHP2Q9NX24 153 aaKnown RBP14.96□□□□□ -0.01
SOX2-201ENST00000325404 KLLNB2CW77 178 aa14.96□□□□□ -0.02
SOX2-201ENST00000325404 OR11H12B2RN74 326 aa14.96□□□□□ -0.02
SOX2-201ENST00000325404 SAP30O75446 220 aa14.96□□□□□ -0.02
SOX2-201ENST00000325404 C2orf66Q6UXQ4 117 aa14.96□□□□□ -0.02
SOX2-201ENST00000325404 OR11H1Q8NG94 326 aa14.96□□□□□ -0.02
SOX2-201ENST00000325404 OR11H2Q8NH07 326 aa14.96□□□□□ -0.02
SOX2-201ENST00000325404 RPL39LQ96EH5 51 aaKnown RBP14.96□□□□□ -0.02
SOX2-201ENST00000325404 PTPN13Q12923 2485 aa14.95□□□□□ -0.02
SOX2-201ENST00000325404 MYMXA0A1B0GTQ4 84 aa14.95□□□□□ -0.02
SOX2-201ENST00000325404 J3KRW8 73 aa14.95□□□□□ -0.02
SOX2-201ENST00000325404 KLK15Q9H2R5 256 aa14.95□□□□□ -0.02
SOX2-201ENST00000325404 A0A1B0GWB2 263 aa14.95□□□□□ -0.02
SOX2-201ENST00000325404 IGHV4-38-2P0DP08 117 aa14.95□□□□□ -0.02
SOX2-201ENST00000325404 PF4V1P10720 104 aa14.95□□□□□ -0.02
SOX2-201ENST00000325404 KIF25-AS1Q9Y6Z4 181 aa14.95□□□□□ -0.02
SOX2-201ENST00000325404 ANKRD17O75179 2603 aaKnown RBP14.94□□□□□ -0.02
SOX2-201ENST00000325404 TRBV7-3A0A075B6L6 115 aa14.94□□□□□ -0.02
SOX2-201ENST00000325404 H3BUX3 64 aa14.94□□□□□ -0.02
SOX2-201ENST00000325404 CFHR3Q02985 330 aa14.94□□□□□ -0.02
SOX2-201ENST00000325404 BAALCQ8WXS3 180 aa14.94□□□□□ -0.02
SOX2-201ENST00000325404 CSTL1Q9H114 145 aa14.94□□□□□ -0.02
SOX2-201ENST00000325404 USP9YO00507 2555 aaPredicted RBP14.94□□□□□ -0.02
SOX2-201ENST00000325404 IGLL5B9A064 214 aa14.94□□□□□ -0.02
SOX2-201ENST00000325404 ID1P41134 155 aa14.94□□□□□ -0.02
SOX2-201ENST00000325404 RPL11P62913 178 aaKnown RBP14.94□□□□□ -0.02
SOX2-201ENST00000325404 CSMD1Q96PZ7 3565 aa14.94□□□□□ -0.02
SOX2-201ENST00000325404 CENPEQ02224 2701 aa14.93□□□□□ -0.02
SOX2-201ENST00000325404 GNRH2O43555 120 aa14.93□□□□□ -0.02
SOX2-201ENST00000325404 IGHV3-11P01762 117 aa14.93□□□□□ -0.02
SOX2-201ENST00000325404 LY6EQ16553 131 aa14.93□□□□□ -0.02
SOX2-201ENST00000325404 C12orf74Q32Q52 190 aa14.93□□□□□ -0.02
SOX2-201ENST00000325404 POLQO75417 2590 aa14.93□□□□□ -0.02
SOX2-201ENST00000325404 K7ERJ3 54 aa14.93□□□□□ -0.02
SOX2-201ENST00000325404 MGPP08493 103 aa14.93□□□□□ -0.02
SOX2-201ENST00000325404 GATA3P23771 443 aa14.93□□□□□ -0.02
SOX2-201ENST00000325404 LINC00315P59091 139 aa14.93□□□□□ -0.02
SOX2-201ENST00000325404 HIST1H4GQ99525 98 aa14.93□□□□□ -0.02
SOX2-201ENST00000325404 VPS13CQ709C8 3753 aa14.92□□□□□ -0.02
SOX2-201ENST00000325404 KRTAP10-9P60411 292 aa14.92□□□□□ -0.02
SOX2-201ENST00000325404 FBN2P35556 2912 aa14.92□□□□□ -0.02
SOX2-201ENST00000325404 MAP1AP78559 2803 aaPredicted RBP14.92□□□□□ -0.02
SOX2-201ENST00000325404 CIDEAO60543 219 aa14.92□□□□□ -0.02
SOX2-201ENST00000325404 FOXI2Q6ZQN5 318 aa14.92□□□□□ -0.02
SOX2-201ENST00000325404 SVEP1Q4LDE5 3571 aa14.91□□□□□ -0.02
SOX2-201ENST00000325404 F6UB75 175 aa14.91□□□□□ -0.02
SOX2-201ENST00000325404 ODF3Q96PU9 254 aa14.91□□□□□ -0.02
SOX2-201ENST00000325404 PRSS29PA6NIE9 313 aa14.91□□□□□ -0.02
SOX2-201ENST00000325404 DEFB1P60022 68 aa14.91□□□□□ -0.02
SOX2-201ENST00000325404 PAPPA-AS1Q5QFB9 102 aa14.91□□□□□ -0.02
SOX2-201ENST00000325404 LINC01356Q8N9X3 169 aa14.91□□□□□ -0.02
SOX2-201ENST00000325404 CHD6Q8TD26 2715 aa14.9□□□□□ -0.02
SOX2-201ENST00000325404 BLCAPP62952 87 aa14.9□□□□□ -0.02
SOX2-201ENST00000325404 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.9□□□□□ -0.02
SOX2-201ENST00000325404 A0A096LNT2 108 aa14.9□□□□□ -0.02
SOX2-201ENST00000325404 BEX4Q9NWD9 120 aaPredicted RBP14.9□□□□□ -0.02
SOX2-201ENST00000325404 CYSLTR1Q9Y271 337 aa14.9□□□□□ -0.02
SOX2-201ENST00000325404 CELSR2Q9HCU4 2923 aa14.89□□□□□ -0.03
SOX2-201ENST00000325404 F8W1H4 67 aa14.89□□□□□ -0.03
SOX2-201ENST00000325404 POLR2KP53803 58 aaKnown RBP14.89□□□□□ -0.03
SOX2-201ENST00000325404 FAM159AQ6UWV7 190 aa14.89□□□□□ -0.03
SOX2-201ENST00000325404 ZNF479Q96JC4 524 aa14.89□□□□□ -0.03
SOX2-201ENST00000325404 DCANP1Q8TF63 244 aa14.89□□□□□ -0.03
SOX2-201ENST00000325404 NAV2Q8IVL1 2488 aa14.88□□□□□ -0.03
SOX2-201ENST00000325404 SPRY2O43597 315 aa14.88□□□□□ -0.03
SOX2-201ENST00000325404 ABCA12Q86UK0 2595 aa14.88□□□□□ -0.03
SOX2-201ENST00000325404 TMEM89A2RUT3 159 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms