RNA–Protein interactions for RNA: ENST00000320578.2

RAB39A-201, Transcript of RAB39A, member RAS oncogene family, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RAB39A, Length 1,830 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB39A-201ENST00000320578 LINC00467Q9BRT7 94 aa13.16□□□□□ -0.3
RAB39A-201ENST00000320578 SETXQ7Z333 2677 aaKnown RBP13.15□□□□□ -0.3
RAB39A-201ENST00000320578 IGHV3-16A0A0C4DH30 117 aa13.15□□□□□ -0.3
RAB39A-201ENST00000320578 RBMY1BA6NDE4 496 aaKnown RBP13.15□□□□□ -0.3
RAB39A-201ENST00000320578 RBMY1EA6NEQ0 496 aaKnown RBP13.15□□□□□ -0.3
RAB39A-201ENST00000320578 PF4P02776 101 aa13.15□□□□□ -0.3
RAB39A-201ENST00000320578 RBMY1DP0C7P1 496 aaKnown RBP13.15□□□□□ -0.3
RAB39A-201ENST00000320578 C9orf85Q96MD7 179 aa13.15□□□□□ -0.3
RAB39A-201ENST00000320578 TRGV11A0A075B6L2 103 aa13.14□□□□□ -0.31
RAB39A-201ENST00000320578 CD7P09564 240 aa13.14□□□□□ -0.31
RAB39A-201ENST00000320578 EVI2AP22794 236 aa13.14□□□□□ -0.31
RAB39A-201ENST00000320578 RNASEKQ6P5S7 137 aaKnown RBP13.14□□□□□ -0.31
RAB39A-201ENST00000320578 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.14□□□□□ -0.31
RAB39A-201ENST00000320578 CITED1Q99966 193 aa13.14□□□□□ -0.31
RAB39A-201ENST00000320578 DEFB125Q8N687 156 aa13.13□□□□□ -0.31
RAB39A-201ENST00000320578 NIT2Q9NQR4 276 aa13.13□□□□□ -0.31
RAB39A-201ENST00000320578 C2CD3Q4AC94 2353 aa13.13□□□□□ -0.31
RAB39A-201ENST00000320578 INSL3P51460 131 aa13.13□□□□□ -0.31
RAB39A-201ENST00000320578 Q6ZWC4 215 aa13.13□□□□□ -0.31
RAB39A-201ENST00000320578 MRAP2Q96G30 205 aa13.13□□□□□ -0.31
RAB39A-201ENST00000320578 DPH3P1Q9H4G8 78 aa13.13□□□□□ -0.31
RAB39A-201ENST00000320578 FLNBO75369 2602 aaKnown RBP13.12□□□□□ -0.31
RAB39A-201ENST00000320578 PRSS47A8MTI9 375 aa13.12□□□□□ -0.31
RAB39A-201ENST00000320578 ZNF124Q15973 351 aa13.12□□□□□ -0.31
RAB39A-201ENST00000320578 TRPT1Q86TN4 253 aaKnown RBP13.12□□□□□ -0.31
RAB39A-201ENST00000320578 POM121L12Q8N7R1 296 aa13.12□□□□□ -0.31
RAB39A-201ENST00000320578 AP1S3Q96PC3 154 aa13.12□□□□□ -0.31
RAB39A-201ENST00000320578 SETD2Q9BYW2 2564 aaPredicted RBP13.11□□□□□ -0.31
RAB39A-201ENST00000320578 M0R381 172 aa13.11□□□□□ -0.31
RAB39A-201ENST00000320578 STHQ8IWL8 128 aa13.11□□□□□ -0.31
RAB39A-201ENST00000320578 Q8N1Y9 231 aa13.11□□□□□ -0.31
RAB39A-201ENST00000320578 PRSS3P2Q8NHM4 247 aa13.11□□□□□ -0.31
RAB39A-201ENST00000320578 GSN-AS1Q9NRJ2 163 aa13.11□□□□□ -0.31
RAB39A-201ENST00000320578 TIMM8BQ9Y5J9 83 aaPredicted RBP13.11□□□□□ -0.31
RAB39A-201ENST00000320578 SORL1Q92673 2214 aa13.11□□□□□ -0.31
RAB39A-201ENST00000320578 AP5S1Q9NUS5 200 aa13.11□□□□□ -0.31
RAB39A-201ENST00000320578 LINC01546A6NGU7 62 aa13.1□□□□□ -0.31
RAB39A-201ENST00000320578 NPYP01303 97 aa13.1□□□□□ -0.31
RAB39A-201ENST00000320578 FA2HQ7L5A8 372 aa13.1□□□□□ -0.31
RAB39A-201ENST00000320578 FAM19A2Q8N3H0 131 aa13.1□□□□□ -0.31
RAB39A-201ENST00000320578 INSP01308 110 aa13.09□□□□□ -0.31
RAB39A-201ENST00000320578 RBMY1A1P0DJD3 496 aaKnown RBP13.09□□□□□ -0.31
RAB39A-201ENST00000320578 RBMY1CP0DJD4 496 aa13.09□□□□□ -0.31
RAB39A-201ENST00000320578 RBMY1FQ15415 496 aaKnown RBP13.09□□□□□ -0.31
RAB39A-201ENST00000320578 SYT8Q8NBV8 401 aa13.09□□□□□ -0.31
RAB39A-201ENST00000320578 MAP1LC3AQ9H492 121 aa13.09□□□□□ -0.31
RAB39A-201ENST00000320578 C19orf73Q9NVV2 129 aa13.09□□□□□ -0.31
RAB39A-201ENST00000320578 AGRNO00468 2067 aa13.09□□□□□ -0.31
RAB39A-201ENST00000320578 TNFRSF6BO95407 300 aa13.09□□□□□ -0.31
RAB39A-201ENST00000320578 NUTF2P61970 127 aaKnown RBP13.09□□□□□ -0.31
RAB39A-201ENST00000320578 PIK3CD-AS1Q5SR53 167 aa13.09□□□□□ -0.31
RAB39A-201ENST00000320578 PTH2Q96A98 100 aa13.09□□□□□ -0.31
RAB39A-201ENST00000320578 MDFICQ9P1T7 246 aa13.09□□□□□ -0.31
RAB39A-201ENST00000320578 IGHV1-24A0A0C4DH33 117 aa13.08□□□□□ -0.32
RAB39A-201ENST00000320578 SMKR1H3BMG3 65 aa13.08□□□□□ -0.32
RAB39A-201ENST00000320578 FXYD7P58549 80 aa13.08□□□□□ -0.32
RAB39A-201ENST00000320578 NXT2Q9NPJ8 142 aaKnown RBP13.08□□□□□ -0.32
RAB39A-201ENST00000320578 KIF25-AS1Q9Y6Z4 181 aa13.08□□□□□ -0.32
RAB39A-201ENST00000320578 NCR2O95944 276 aa13.07□□□□□ -0.32
RAB39A-201ENST00000320578 PPP1R17O96001 155 aa13.07□□□□□ -0.32
RAB39A-201ENST00000320578 IFI27P40305 119 aaPredicted RBP13.07□□□□□ -0.32
RAB39A-201ENST00000320578 NRACQ8N912 160 aa13.07□□□□□ -0.32
RAB39A-201ENST00000320578 F8P00451 2351 aa13.07□□□□□ -0.32
RAB39A-201ENST00000320578 CBY3A6NI87 242 aa13.06□□□□□ -0.32
RAB39A-201ENST00000320578 S100A12P80511 92 aa13.06□□□□□ -0.32
RAB39A-201ENST00000320578 C9orf66Q5T8R8 295 aa13.06□□□□□ -0.32
RAB39A-201ENST00000320578 WNK1Q9H4A3 2382 aa13.06□□□□□ -0.32
RAB39A-201ENST00000320578 C14orf178Q8N769 122 aaPredicted RBP13.06□□□□□ -0.32
RAB39A-201ENST00000320578 SCGB1D1O95968 90 aa13.05□□□□□ -0.32
RAB39A-201ENST00000320578 SMIM17P0DL12 118 aa13.05□□□□□ -0.32
RAB39A-201ENST00000320578 LINC00315P59091 139 aa13.05□□□□□ -0.32
RAB39A-201ENST00000320578 C20orf78Q9BR46 151 aa13.04□□□□□ -0.32
RAB39A-201ENST00000320578 LOC389332A0A1B0GUA5 103 aa13.04□□□□□ -0.32
RAB39A-201ENST00000320578 SPRY2O43597 315 aa13.04□□□□□ -0.32
RAB39A-201ENST00000320578 GAS8-AS1O95177 125 aa13.04□□□□□ -0.32
RAB39A-201ENST00000320578 LEPROTL1O95214 131 aa13.04□□□□□ -0.32
RAB39A-201ENST00000320578 C3orf79P0CE67 100 aa13.04□□□□□ -0.32
RAB39A-201ENST00000320578 CDPF1Q6NVV7 123 aa13.04□□□□□ -0.32
RAB39A-201ENST00000320578 Q8N8P6 123 aa13.04□□□□□ -0.32
RAB39A-201ENST00000320578 MCRIP2Q9BUT9 160 aaKnown RBP13.04□□□□□ -0.32
RAB39A-201ENST00000320578 HSPB8Q9UJY1 196 aa13.04□□□□□ -0.32
RAB39A-201ENST00000320578 KRTDAPP60985 99 aa13.03□□□□□ -0.32
RAB39A-201ENST00000320578 ZNF415Q09FC8 603 aa13.03□□□□□ -0.32
RAB39A-201ENST00000320578 MORN3Q6PF18 240 aaPredicted RBP13.03□□□□□ -0.32
RAB39A-201ENST00000320578 LINC01587Q99440 93 aa13.03□□□□□ -0.32
RAB39A-201ENST00000320578 SPXQ9BT56 116 aa13.03□□□□□ -0.32
RAB39A-201ENST00000320578 IGLV2-18A0A075B6J9 118 aa13.02□□□□□ -0.32
RAB39A-201ENST00000320578 GATA1P15976 413 aaPredicted RBP13.02□□□□□ -0.32
RAB39A-201ENST00000320578 WFDC9Q8NEX5 89 aa13.02□□□□□ -0.32
RAB39A-201ENST00000320578 NDUFAF3Q9BU61 184 aa13.02□□□□□ -0.32
RAB39A-201ENST00000320578 BTF3P20290 206 aaKnown RBP13.02□□□□□ -0.33
RAB39A-201ENST00000320578 Q8N976 141 aa13.02□□□□□ -0.33
RAB39A-201ENST00000320578 MUC4Q99102 2169 aa13.02□□□□□ -0.33
RAB39A-201ENST00000320578 K7EMI3 77 aa13.01□□□□□ -0.33
RAB39A-201ENST00000320578 RPL32P62910 135 aaKnown RBP13.01□□□□□ -0.33
RAB39A-201ENST00000320578 RASL10AQ92737 203 aa13.01□□□□□ -0.33
RAB39A-201ENST00000320578 C1QTNF4Q9BXJ3 329 aa13.01□□□□□ -0.33
RAB39A-201ENST00000320578 TRAV26-2A0A0B4J265 109 aa13□□□□□ -0.33
RAB39A-201ENST00000320578 M0R2P5 195 aa13□□□□□ -0.33
RAB39A-201ENST00000320578 PMCHL1Q16048 86 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms