RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 SRD5A1P18405 259 aa16.59■□□□□ 0.25
SHMT1-201ENST00000316694 SPG11Q96JI7 2443 aa16.59■□□□□ 0.25
SHMT1-201ENST00000316694 CELSR2Q9HCU4 2923 aa16.59■□□□□ 0.25
SHMT1-201ENST00000316694 SLC25A16P16260 332 aa16.59■□□□□ 0.25
SHMT1-201ENST00000316694 TAL2Q16559 108 aa16.59■□□□□ 0.25
SHMT1-201ENST00000316694 IGLL5B9A064 214 aa16.58■□□□□ 0.25
SHMT1-201ENST00000316694 H3BUX3 64 aa16.58■□□□□ 0.25
SHMT1-201ENST00000316694 C12orf74Q32Q52 190 aa16.58■□□□□ 0.25
SHMT1-201ENST00000316694 RHPN1-AS1Q9BWJ2 59 aa16.58■□□□□ 0.25
SHMT1-201ENST00000316694 IGHV4-61A0A0C4DH41 118 aa16.58■□□□□ 0.24
SHMT1-201ENST00000316694 RNF223E7ERA6 249 aa16.58■□□□□ 0.24
SHMT1-201ENST00000316694 RNASE3P12724 160 aaKnown RBP16.58■□□□□ 0.24
SHMT1-201ENST00000316694 USMG5Q96IX5 58 aa16.58■□□□□ 0.24
SHMT1-201ENST00000316694 MYMXA0A1B0GTQ4 84 aa16.57■□□□□ 0.24
SHMT1-201ENST00000316694 BLCAPP62952 87 aa16.57■□□□□ 0.24
SHMT1-201ENST00000316694 BAALCQ8WXS3 180 aa16.57■□□□□ 0.24
SHMT1-201ENST00000316694 ZNF479Q96JC4 524 aa16.57■□□□□ 0.24
SHMT1-201ENST00000316694 E9PLD3 99 aa16.57■□□□□ 0.24
SHMT1-201ENST00000316694 DEFB104AQ8WTQ1 72 aa16.57■□□□□ 0.24
SHMT1-201ENST00000316694 FAM19A4Q96LR4 140 aa16.57■□□□□ 0.24
SHMT1-201ENST00000316694 PRORYQ9H606 182 aa16.57■□□□□ 0.24
SHMT1-201ENST00000316694 Q6ZS46 218 aa16.56■□□□□ 0.24
SHMT1-201ENST00000316694 IGHG2P01859 326 aa16.56■□□□□ 0.24
SHMT1-201ENST00000316694 MUC4Q99102 2169 aa16.55■□□□□ 0.24
SHMT1-201ENST00000316694 WFDC12Q8WWY7 111 aa16.55■□□□□ 0.24
SHMT1-201ENST00000316694 TEX48A0A1B0GUV7 120 aa16.55■□□□□ 0.24
SHMT1-201ENST00000316694 PRSS29PA6NIE9 313 aa16.55■□□□□ 0.24
SHMT1-201ENST00000316694 MED14OSP0DP75 135 aa16.54■□□□□ 0.24
SHMT1-201ENST00000316694 CYSLTR1Q9Y271 337 aa16.54■□□□□ 0.24
SHMT1-201ENST00000316694 TRBV7-3A0A075B6L6 115 aa16.54■□□□□ 0.24
SHMT1-201ENST00000316694 EDN2P20800 178 aa16.54■□□□□ 0.24
SHMT1-201ENST00000316694 FOXI2Q6ZQN5 318 aa16.54■□□□□ 0.24
SHMT1-201ENST00000316694 PIMREGQ9BSJ6 248 aa16.54■□□□□ 0.24
SHMT1-201ENST00000316694 PKD1L2Q7Z442 2459 aa16.53■□□□□ 0.24
SHMT1-201ENST00000316694 SCGB2A2Q13296 93 aa16.53■□□□□ 0.24
SHMT1-201ENST00000316694 CRYBG3Q68DQ2 2970 aa16.53■□□□□ 0.24
SHMT1-201ENST00000316694 PRADC1Q9BSG0 188 aa16.53■□□□□ 0.24
SHMT1-201ENST00000316694 CFAP46Q8IYW2 2715 aa16.53■□□□□ 0.24
SHMT1-201ENST00000316694 H3BUA1 57 aa16.52■□□□□ 0.24
SHMT1-201ENST00000316694 APRG1Q8IVJ8 170 aa16.52■□□□□ 0.24
SHMT1-201ENST00000316694 DAZ1Q9NQZ3 744 aaKnown RBP16.52■□□□□ 0.24
SHMT1-201ENST00000316694 DUSP14O95147 198 aaKnown RBP16.52■□□□□ 0.23
SHMT1-201ENST00000316694 JPT2Q9H910 190 aa16.52■□□□□ 0.23
SHMT1-201ENST00000316694 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.52■□□□□ 0.231e-8■■■■□ 21.6
SHMT1-201ENST00000316694 H3BMG7 143 aa16.51■□□□□ 0.23
SHMT1-201ENST00000316694 PPP1R17O96001 155 aa16.51■□□□□ 0.23
SHMT1-201ENST00000316694 LGALS1P09382 135 aaKnown RBP16.51■□□□□ 0.23
SHMT1-201ENST00000316694 AMTNQ6UX39 209 aa16.51■□□□□ 0.23
SHMT1-201ENST00000316694 A6NDX4 124 aa16.51■□□□□ 0.23
SHMT1-201ENST00000316694 CSMD2Q7Z408 3487 aa16.5■□□□□ 0.23
SHMT1-201ENST00000316694 FAM159AQ6UWV7 190 aa16.5■□□□□ 0.23
SHMT1-201ENST00000316694 ZNF815PA8K554 130 aa16.5■□□□□ 0.23
SHMT1-201ENST00000316694 WFDC2Q14508 124 aa16.5■□□□□ 0.23
SHMT1-201ENST00000316694 FLNCQ14315 2725 aa16.49■□□□□ 0.23
SHMT1-201ENST00000316694 A0A087WWL8 130 aa16.49■□□□□ 0.23
SHMT1-201ENST00000316694 EMP1P54849 157 aa16.49■□□□□ 0.23
SHMT1-201ENST00000316694 RRN3P1Q2M238 152 aa16.48■□□□□ 0.23
SHMT1-201ENST00000316694 SCGB1D4Q6XE38 83 aa16.48■□□□□ 0.23
SHMT1-201ENST00000316694 TP53TG1Q9Y2A0 90 aa16.48■□□□□ 0.23
SHMT1-201ENST00000316694 TRBV7-9A0A0J9YWB2 115 aa16.48■□□□□ 0.23
SHMT1-201ENST00000316694 F5H697 171 aa16.48■□□□□ 0.23
SHMT1-201ENST00000316694 LINC00315P59091 139 aa16.48■□□□□ 0.23
SHMT1-201ENST00000316694 CD300EQ496F6 205 aaPredicted RBP16.48■□□□□ 0.23
SHMT1-201ENST00000316694 KIF25-AS1Q9Y6Z4 181 aa16.48■□□□□ 0.23
SHMT1-201ENST00000316694 BRI3O95415 125 aa16.47■□□□□ 0.23
SHMT1-201ENST00000316694 MTURNQ8N3F0 131 aa16.47■□□□□ 0.23
SHMT1-201ENST00000316694 CCL19Q99731 98 aa16.47■□□□□ 0.23
SHMT1-201ENST00000316694 UTP20O75691 2785 aaKnown RBP16.47■□□□□ 0.23
SHMT1-201ENST00000316694 TRAV12-3A0A0B4J271 114 aa16.47■□□□□ 0.23
SHMT1-201ENST00000316694 KLLNB2CW77 178 aa16.47■□□□□ 0.23
SHMT1-201ENST00000316694 LINC01619G3V211 115 aa16.47■□□□□ 0.23
SHMT1-201ENST00000316694 NXPH4O95158 308 aa16.47■□□□□ 0.23
SHMT1-201ENST00000316694 CD7P09564 240 aa16.47■□□□□ 0.23
SHMT1-201ENST00000316694 F8W1H4 67 aa16.46■□□□□ 0.23
SHMT1-201ENST00000316694 IGLV1-40P01703 118 aa16.46■□□□□ 0.23
SHMT1-201ENST00000316694 TMEM95Q3KNT9 176 aa16.46■□□□□ 0.23
SHMT1-201ENST00000316694 SUMO4Q6EEV6 95 aa16.46■□□□□ 0.23
SHMT1-201ENST00000316694 C10orf105Q8TEF2 133 aa16.46■□□□□ 0.23
SHMT1-201ENST00000316694 CRYGDP07320 174 aa16.46■□□□□ 0.23
SHMT1-201ENST00000316694 KLHL30-AS1Q8NEE0 82 aa16.46■□□□□ 0.23
SHMT1-201ENST00000316694 PLEKHB2Q96CS7 222 aa16.46■□□□□ 0.23
SHMT1-201ENST00000316694 POM121L12Q8N7R1 296 aa16.45■□□□□ 0.22
SHMT1-201ENST00000316694 HOXA3O43365 443 aaPredicted RBP16.45■□□□□ 0.22
SHMT1-201ENST00000316694 TSHBP01222 138 aa16.45■□□□□ 0.22
SHMT1-201ENST00000316694 ID1P41134 155 aa16.45■□□□□ 0.22
SHMT1-201ENST00000316694 RPL39P62891 51 aaKnown RBP16.45■□□□□ 0.22
SHMT1-201ENST00000316694 ZFP2Q6ZN57 461 aa16.45■□□□□ 0.22
SHMT1-201ENST00000316694 CSPG4Q6UVK1 2322 aa16.44■□□□□ 0.22
SHMT1-201ENST00000316694 A0A1B0GWB2 263 aa16.44■□□□□ 0.22
SHMT1-201ENST00000316694 C11orf86A6NJI1 115 aa16.44■□□□□ 0.22
SHMT1-201ENST00000316694 CLEC2AQ6UVW9 174 aa16.44■□□□□ 0.22
SHMT1-201ENST00000316694 IGHV4-30-2A0A087WSY4 118 aa16.44■□□□□ 0.22
SHMT1-201ENST00000316694 SRSF9Q13242 221 aaKnown RBP eCLIP16.44■□□□□ 0.22
SHMT1-201ENST00000316694 FAM74A4Q5TZK3 123 aa16.44■□□□□ 0.22
SHMT1-201ENST00000316694 SPANXB1Q9NS25 103 aaPredicted RBP16.44■□□□□ 0.22
SHMT1-201ENST00000316694 IGHV4OR15-8A0A075B7B6 117 aa16.43■□□□□ 0.22
SHMT1-201ENST00000316694 A0A087WW49 117 aa16.43■□□□□ 0.22
SHMT1-201ENST00000316694 IGKV3-20P01619 116 aa16.43■□□□□ 0.22
SHMT1-201ENST00000316694 SH2D6Q7Z4S9 175 aa16.43■□□□□ 0.22
SHMT1-201ENST00000316694 DCANP1Q8TF63 244 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms