RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 RPL39LQ96EH5 51 aaKnown RBP9.69□□□□□ -0.86
LIG1-201ENST00000263274 TRAV8-2A0A0B4J237 113 aa9.68□□□□□ -0.86
LIG1-201ENST00000263274 TRAV41A0A0B4J266 112 aa9.68□□□□□ -0.86
LIG1-201ENST00000263274 CLPSL1A2RUU4 121 aa9.68□□□□□ -0.86
LIG1-201ENST00000263274 SCGB1D4Q6XE38 83 aa9.68□□□□□ -0.86
LIG1-201ENST00000263274 HHLA3Q9XRX5 114 aa9.68□□□□□ -0.86
LIG1-201ENST00000263274 CYSLTR1Q9Y271 337 aa9.68□□□□□ -0.86
LIG1-201ENST00000263274 CRYBG3Q68DQ2 2970 aa9.68□□□□□ -0.86
LIG1-201ENST00000263274 PRR9Q5T870 116 aa9.68□□□□□ -0.86
LIG1-201ENST00000263274 UNQ9165/PRO28630Q6UXU0 137 aa9.68□□□□□ -0.86
LIG1-201ENST00000263274 MRAP2Q96G30 205 aa9.68□□□□□ -0.86
LIG1-201ENST00000263274 SPAG8Q99932 426 aaPredicted RBP9.68□□□□□ -0.86
LIG1-201ENST00000263274 CCDC168Q8NDH2 2452 aa9.68□□□□□ -0.86
LIG1-201ENST00000263274 CENPVL3A0A0U1RRI6 287 aa9.67□□□□□ -0.86
LIG1-201ENST00000263274 GNRH2O43555 120 aa9.67□□□□□ -0.86
LIG1-201ENST00000263274 INSL3P51460 131 aa9.67□□□□□ -0.86
LIG1-201ENST00000263274 OR11H12B2RN74 326 aa9.67□□□□□ -0.86
LIG1-201ENST00000263274 C11orf71Q6IPW1 123 aa9.67□□□□□ -0.86
LIG1-201ENST00000263274 ZNF575Q86XF7 245 aa9.67□□□□□ -0.86
LIG1-201ENST00000263274 OR11H1Q8NG94 326 aa9.67□□□□□ -0.86
LIG1-201ENST00000263274 OR11H2Q8NH07 326 aa9.67□□□□□ -0.86
LIG1-201ENST00000263274 TMEM190Q8WZ59 177 aa9.67□□□□□ -0.86
LIG1-201ENST00000263274 USP9XQ93008 2570 aaPredicted RBP9.67□□□□□ -0.86
LIG1-201ENST00000263274 A0A1B0GWB2 263 aa9.67□□□□□ -0.86
LIG1-201ENST00000263274 FBXL19-AS1Q494R0 122 aa9.67□□□□□ -0.86
LIG1-201ENST00000263274 SRSF9Q13242 221 aaKnown RBP eCLIP9.66□□□□□ -0.86
LIG1-201ENST00000263274 EBI3Q14213 229 aa9.66□□□□□ -0.86
LIG1-201ENST00000263274 ANXA2RQ3ZCQ2 193 aa9.66□□□□□ -0.86
LIG1-201ENST00000263274 FAM74A4Q5TZK3 123 aa9.66□□□□□ -0.86
LIG1-201ENST00000263274 C20orf173Q96LM9 149 aa9.66□□□□□ -0.86
LIG1-201ENST00000263274 SPXQ9BT56 116 aa9.66□□□□□ -0.86
LIG1-201ENST00000263274 TRBV7-1A0A0A6YYK4 115 aa9.66□□□□□ -0.86
LIG1-201ENST00000263274 ASIPP42127 132 aa9.66□□□□□ -0.86
LIG1-201ENST00000263274 UCNP55089 124 aa9.66□□□□□ -0.86
LIG1-201ENST00000263274 IGHV7-4-1A0A0J9YVY3 117 aa9.65□□□□□ -0.86
LIG1-201ENST00000263274 SPINK8P0C7L1 97 aa9.65□□□□□ -0.86
LIG1-201ENST00000263274 UTP20O75691 2785 aaKnown RBP9.65□□□□□ -0.86
LIG1-201ENST00000263274 CEND1Q8N111 149 aa9.65□□□□□ -0.86
LIG1-201ENST00000263274 C20orf78Q9BR46 151 aa9.65□□□□□ -0.86
LIG1-201ENST00000263274 SPANXB1Q9NS25 103 aaPredicted RBP9.65□□□□□ -0.86
LIG1-201ENST00000263274 SMIM2Q9BVW6 85 aa9.64□□□□□ -0.87
LIG1-201ENST00000263274 HECTD1Q9ULT8 2610 aa9.64□□□□□ -0.87
LIG1-201ENST00000263274 SONP18583 2426 aaKnown RBP9.64□□□□□ -0.87
LIG1-201ENST00000263274 HTN1P15515 57 aa9.64□□□□□ -0.87
LIG1-201ENST00000263274 SUMO2P61956 95 aaKnown RBP9.64□□□□□ -0.87
LIG1-201ENST00000263274 A0A087WX48 190 aa9.64□□□□□ -0.87
LIG1-201ENST00000263274 TRAV21A0A0B4J279 112 aa9.64□□□□□ -0.87
LIG1-201ENST00000263274 GAGE13Q4V321 117 aa9.64□□□□□ -0.87
LIG1-201ENST00000263274 NRACQ8N912 160 aa9.64□□□□□ -0.87
LIG1-201ENST00000263274 A0A087WWL8 130 aa9.63□□□□□ -0.87
LIG1-201ENST00000263274 LOC107984156A0A0G2JMH3 177 aa9.63□□□□□ -0.87
LIG1-201ENST00000263274 RBAKDNA6NC62 111 aa9.63□□□□□ -0.87
LIG1-201ENST00000263274 COX8CQ7Z4L0 72 aa9.63□□□□□ -0.87
LIG1-201ENST00000263274 ABCA12Q86UK0 2595 aa9.63□□□□□ -0.87
LIG1-201ENST00000263274 ARL17AQ8IVW1 177 aa9.63□□□□□ -0.87
LIG1-201ENST00000263274 C5orf56Q8N8D9 126 aa9.63□□□□□ -0.87
LIG1-201ENST00000263274 SYT8Q8NBV8 401 aa9.63□□□□□ -0.87
LIG1-201ENST00000263274 MRPL16Q9NX20 251 aaKnown RBP9.63□□□□□ -0.87
LIG1-201ENST00000263274 APOMO95445 188 aa9.63□□□□□ -0.87
LIG1-201ENST00000263274 CNFNQ9BYD5 112 aa9.63□□□□□ -0.87
LIG1-201ENST00000263274 MOB4Q9Y3A3 225 aa9.63□□□□□ -0.87
LIG1-201ENST00000263274 H3BUX3 64 aa9.63□□□□□ -0.87
LIG1-201ENST00000263274 H7C1H1 209 aa9.63□□□□□ -0.87
LIG1-201ENST00000263274 C2orf66Q6UXQ4 117 aa9.63□□□□□ -0.87
LIG1-201ENST00000263274 JPT2Q9H910 190 aa9.63□□□□□ -0.87
LIG1-201ENST00000263274 NACAE9PAV3 2078 aa9.62□□□□□ -0.87
LIG1-201ENST00000263274 F8W1H4 67 aa9.62□□□□□ -0.87
LIG1-201ENST00000263274 TGFAP01135 160 aa9.62□□□□□ -0.87
LIG1-201ENST00000263274 LMO4P61968 165 aa9.62□□□□□ -0.87
LIG1-201ENST00000263274 BLCAPP62952 87 aa9.62□□□□□ -0.87
LIG1-201ENST00000263274 C9orf139Q6ZV77 190 aa9.62□□□□□ -0.87
LIG1-201ENST00000263274 YAE1D1Q9NRH1 226 aa9.62□□□□□ -0.87
LIG1-201ENST00000263274 C9orf47Q6ZRZ4 202 aa9.62□□□□□ -0.87
LIG1-201ENST00000263274 ZNF815PA8K554 130 aa9.61□□□□□ -0.87
LIG1-201ENST00000263274 C12orf74Q32Q52 190 aa9.61□□□□□ -0.87
LIG1-201ENST00000263274 KLHL30-AS1Q8NEE0 82 aa9.61□□□□□ -0.87
LIG1-201ENST00000263274 RNF183Q96D59 192 aa9.61□□□□□ -0.87
LIG1-201ENST00000263274 RHPN1-AS1Q9BWJ2 59 aa9.61□□□□□ -0.87
LIG1-201ENST00000263274 DPH3P1Q9H4G8 78 aa9.61□□□□□ -0.87
LIG1-201ENST00000263274 ZNF256Q9Y2P7 627 aaPredicted RBP9.61□□□□□ -0.87
LIG1-201ENST00000263274 IGLV2-18A0A075B6J9 118 aa9.61□□□□□ -0.87
LIG1-201ENST00000263274 F8VRH5 84 aa9.61□□□□□ -0.87
LIG1-201ENST00000263274 TCTEX1D4Q5JR98 221 aa9.61□□□□□ -0.87
LIG1-201ENST00000263274 TNFRSF18Q9Y5U5 241 aa9.61□□□□□ -0.87
LIG1-201ENST00000263274 TRAV12-3A0A0B4J271 114 aa9.61□□□□□ -0.87
LIG1-201ENST00000263274 M0QXV9 152 aa9.61□□□□□ -0.87
LIG1-201ENST00000263274 CD7P09564 240 aa9.61□□□□□ -0.87
LIG1-201ENST00000263274 ORMDL2Q53FV1 153 aa9.61□□□□□ -0.87
LIG1-201ENST00000263274 SPATA25Q9BR10 227 aa9.61□□□□□ -0.87
LIG1-201ENST00000263274 C2CD3Q4AC94 2353 aa9.6□□□□□ -0.87
LIG1-201ENST00000263274 PLNP26678 52 aa9.6□□□□□ -0.87
LIG1-201ENST00000263274 FAM159AQ6UWV7 190 aa9.6□□□□□ -0.87
LIG1-201ENST00000263274 LINC00477Q96M19 166 aa9.6□□□□□ -0.87
LIG1-201ENST00000263274 ANAPC13Q9BS18 74 aa9.6□□□□□ -0.87
LIG1-201ENST00000263274 CSMD2Q7Z408 3487 aa9.6□□□□□ -0.87
LIG1-201ENST00000263274 IGLL5B9A064 214 aa9.6□□□□□ -0.87
LIG1-201ENST00000263274 IGHV4-38-2P0DP08 117 aa9.6□□□□□ -0.87
LIG1-201ENST00000263274 SRSF2Q01130 221 aaKnown RBP9.6□□□□□ -0.87
LIG1-201ENST00000263274 TMEM170BQ5T4T1 132 aa9.6□□□□□ -0.87
LIG1-201ENST00000263274 RASL10AQ92737 203 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms