RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 AQP3Q92482 292 aa2.45□□□□□ -2.02
CCDC54-201ENST00000261058 SPTSSAQ969W0 71 aa2.45□□□□□ -2.02
CCDC54-201ENST00000261058 RNF5Q99942 180 aa2.45□□□□□ -2.02
CCDC54-201ENST00000261058 UPK3BQ9BT76 320 aa2.45□□□□□ -2.02
CCDC54-201ENST00000261058 NXT2Q9NPJ8 142 aaKnown RBP2.45□□□□□ -2.02
CCDC54-201ENST00000261058 IL36BQ9NZH7 164 aa2.45□□□□□ -2.02
CCDC54-201ENST00000261058 LY96Q9Y6Y9 160 aa2.45□□□□□ -2.02
CCDC54-201ENST00000261058 MAP3K4Q9Y6R4 1608 aa2.45□□□□□ -2.02
CCDC54-201ENST00000261058 RGPD1P0DJD0 1748 aa2.45□□□□□ -2.02
CCDC54-201ENST00000261058 DLC1Q96QB1 1528 aa2.45□□□□□ -2.02
CCDC54-201ENST00000261058 COL27A1Q8IZC6 1860 aaPredicted RBP2.45□□□□□ -2.02
CCDC54-201ENST00000261058 COL1A1P02452 1464 aaPredicted RBP2.44□□□□□ -2.02
CCDC54-201ENST00000261058 SCN9AQ15858 1988 aa2.44□□□□□ -2.02
CCDC54-201ENST00000261058 NESP48681 1621 aa2.44□□□□□ -2.02
CCDC54-201ENST00000261058 PIGBOS1A0A0B4J2F0 54 aa2.44□□□□□ -2.02
CCDC54-201ENST00000261058 IGKV1-9A0A0C4DH69 117 aa2.44□□□□□ -2.02
CCDC54-201ENST00000261058 CCL16O15467 120 aa2.44□□□□□ -2.02
CCDC54-201ENST00000261058 IGHV1-46P01743 117 aa2.44□□□□□ -2.02
CCDC54-201ENST00000261058 CXCL8P10145 99 aa2.44□□□□□ -2.02
CCDC54-201ENST00000261058 RNASE4P34096 147 aaKnown RBP2.44□□□□□ -2.02
CCDC54-201ENST00000261058 RPL30P62888 115 aaKnown RBP2.44□□□□□ -2.02
CCDC54-201ENST00000261058 BLCAPP62952 87 aa2.44□□□□□ -2.02
CCDC54-201ENST00000261058 MRPL51Q4U2R6 128 aaKnown RBP2.44□□□□□ -2.02
CCDC54-201ENST00000261058 RPL7L1Q6DKI1 246 aaKnown RBP2.44□□□□□ -2.02
CCDC54-201ENST00000261058 ATP11AUNQ6ZP68 121 aa2.44□□□□□ -2.02
CCDC54-201ENST00000261058 WFDC5Q8TCV5 224 aa2.44□□□□□ -2.02
CCDC54-201ENST00000261058 ITLN2Q8WWU7 325 aaPredicted RBP2.44□□□□□ -2.02
CCDC54-201ENST00000261058 ODF3Q96PU9 254 aa2.44□□□□□ -2.02
CCDC54-201ENST00000261058 CXCL16Q9H2A7 254 aa2.44□□□□□ -2.02
CCDC54-201ENST00000261058 TAS2R4Q9NYW5 299 aa2.44□□□□□ -2.02
CCDC54-201ENST00000261058 LAMB1P07942 1786 aa2.44□□□□□ -2.02
CCDC54-201ENST00000261058 KDM3BQ7LBC6 1761 aa2.44□□□□□ -2.02
CCDC54-201ENST00000261058 TRPM2O94759 1503 aa2.44□□□□□ -2.02
CCDC54-201ENST00000261058 ATP7AQ04656 1500 aa2.44□□□□□ -2.02
CCDC54-201ENST00000261058 DOCK2Q92608 1830 aa2.44□□□□□ -2.02
CCDC54-201ENST00000261058 RGPD3A6NKT7 1758 aaPredicted RBP2.44□□□□□ -2.02
CCDC54-201ENST00000261058 F2Z2F3 143 aa2.43□□□□□ -2.02
CCDC54-201ENST00000261058 NDUFC1O43677 76 aa2.43□□□□□ -2.02
CCDC54-201ENST00000261058 CGB3P0DN86 165 aa2.43□□□□□ -2.02
CCDC54-201ENST00000261058 CGB7P0DN87 165 aa2.43□□□□□ -2.02
CCDC54-201ENST00000261058 PIPP12273 146 aaPredicted RBP2.43□□□□□ -2.02
CCDC54-201ENST00000261058 CKS2P33552 79 aa2.43□□□□□ -2.02
CCDC54-201ENST00000261058 FUSP35637 526 aaKnown RBP eCLIP2.43□□□□□ -2.02
CCDC54-201ENST00000261058 RPL27AP46776 148 aaKnown RBP2.43□□□□□ -2.02
CCDC54-201ENST00000261058 SMIM11AP58511 58 aa2.43□□□□□ -2.02
CCDC54-201ENST00000261058 TSPEAR-AS2P59090 65 aa2.43□□□□□ -2.02
CCDC54-201ENST00000261058 ZNF816Q0VGE8 651 aaPredicted RBP2.43□□□□□ -2.02
CCDC54-201ENST00000261058 CIRBPQ14011 172 aaKnown RBP2.43□□□□□ -2.02
CCDC54-201ENST00000261058 PDCD11Q14690 1871 aaKnown RBP2.43□□□□□ -2.02
CCDC54-201ENST00000261058 SS18Q15532 418 aa2.43□□□□□ -2.02
CCDC54-201ENST00000261058 ZNF791Q3KP31 576 aaPredicted RBP2.43□□□□□ -2.02
CCDC54-201ENST00000261058 CDC42BPGQ6DT37 1551 aa2.43□□□□□ -2.02
CCDC54-201ENST00000261058 IGFL1Q6UW32 110 aa2.43□□□□□ -2.02
CCDC54-201ENST00000261058 LINC00643Q86TS7 51 aa2.43□□□□□ -2.02
CCDC54-201ENST00000261058 Q8N8P6 123 aa2.43□□□□□ -2.02
CCDC54-201ENST00000261058 DAND5Q8N907 189 aa2.43□□□□□ -2.02
CCDC54-201ENST00000261058 CIRBP-AS1Q8TBR5 109 aa2.43□□□□□ -2.02
CCDC54-201ENST00000261058 GABARAPL1Q9H0R8 117 aa2.43□□□□□ -2.02
CCDC54-201ENST00000261058 C11orf1Q9H5F2 150 aa2.43□□□□□ -2.02
CCDC54-201ENST00000261058 OSTCQ9NRP0 149 aa2.43□□□□□ -2.02
CCDC54-201ENST00000261058 HIGD1BQ9P298 99 aa2.43□□□□□ -2.02
CCDC54-201ENST00000261058 NWD2Q9ULI1 1742 aa2.43□□□□□ -2.02
CCDC54-201ENST00000261058 PHLDA3Q9Y5J5 127 aa2.43□□□□□ -2.02
CCDC54-201ENST00000261058 PATJQ8NI35 1801 aa2.43□□□□□ -2.02
CCDC54-201ENST00000261058 ASXL1Q8IXJ9 1541 aa2.43□□□□□ -2.02
CCDC54-201ENST00000261058 TOP2BQ02880 1626 aa2.43□□□□□ -2.02
CCDC54-201ENST00000261058 EIF2AK4Q9P2K8 1649 aaKnown RBP2.43□□□□□ -2.02
CCDC54-201ENST00000261058 IBA57-AS1B1ANH7 110 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 BCE1O60756 84 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 CCKP06307 115 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 CCL4P13236 92 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 RPL18Q07020 188 aaKnown RBP2.42□□□□□ -2.02
CCDC54-201ENST00000261058 INSL4Q14641 139 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 KRTAP13-2Q52LG2 175 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 TMEM170BQ5T4T1 132 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 NOXRED1Q6NXP6 359 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 C2orf91Q6ZV80 131 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 LINC01560Q8TB33 94 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 ARL2-SNX15V9GYD0 113 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 ANAPC1Q9H1A4 1944 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 RGPD2P0DJD1 1756 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 KIDINS220Q9ULH0 1771 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 GPR179Q6PRD1 2367 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 USP54Q70EL1 1684 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 RGPD8O14715 1765 aaPredicted RBP2.42□□□□□ -2.02
CCDC54-201ENST00000261058 RGPD5Q99666 1765 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 AGLP35573 1532 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 IGHV1-24A0A0C4DH33 117 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 E7EQL1 145 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 SAA1P0DJI8 122 aaPredicted RBP2.42□□□□□ -2.02
CCDC54-201ENST00000261058 CD28P10747 220 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 ASB16-AS1Q495Z4 193 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 CHCHD2P9Q5T1J5 151 aaPredicted RBP2.42□□□□□ -2.02
CCDC54-201ENST00000261058 C16orf47Q6ZP98 133 aaPredicted RBP2.42□□□□□ -2.02
CCDC54-201ENST00000261058 C6orf201Q7Z4U5 140 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 FAM216BQ8N7L0 139 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 SMIM4Q8WVI0 70 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 PLA2G12AQ9BZM1 189 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 NMES1Q9C002 83 aa2.42□□□□□ -2.02
CCDC54-201ENST00000261058 S4R3C0 116 aa2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms