RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 C9orf47Q6ZRZ4 202 aa16.13■□□□□ 0.17
TRIM28-201ENST00000253024 NPFFR1Q9GZQ6 430 aa16.13■□□□□ 0.17
TRIM28-201ENST00000253024 SPCS1Q9Y6A9 102 aa16.13■□□□□ 0.17
TRIM28-201ENST00000253024 F5H697 171 aa16.13■□□□□ 0.17
TRIM28-201ENST00000253024 MEGF9Q9H1U4 602 aa16.12■□□□□ 0.17
TRIM28-201ENST00000253024 TRAV12-3A0A0B4J271 114 aa16.12■□□□□ 0.17
TRIM28-201ENST00000253024 RBAKDNA6NC62 111 aa16.12■□□□□ 0.17
TRIM28-201ENST00000253024 ZNF688P0C7X2 276 aa16.12■□□□□ 0.17
TRIM28-201ENST00000253024 SCGB3A1Q96QR1 104 aa16.11■□□□□ 0.17
TRIM28-201ENST00000253024 RASL10AQ92737 203 aa16.11■□□□□ 0.17
TRIM28-201ENST00000253024 CDKN1BP46527 198 aa16.11■□□□□ 0.17
TRIM28-201ENST00000253024 OR9G4Q8NGQ1 327 aa16.11■□□□□ 0.17
TRIM28-201ENST00000253024 LINC00477Q96M19 166 aa16.1■□□□□ 0.17
TRIM28-201ENST00000253024 ASIPP42127 132 aa16.1■□□□□ 0.17
TRIM28-201ENST00000253024 PIMREGQ9BSJ6 248 aa16.1■□□□□ 0.17
TRIM28-201ENST00000253024 U3KQE9 123 aa16.1■□□□□ 0.17
TRIM28-201ENST00000253024 C9orf139Q6ZV77 190 aa16.09■□□□□ 0.17
TRIM28-201ENST00000253024 NIPBLQ6KC79 2804 aaeCLIP16.09■□□□□ 0.172e-6■■□□□ 12.7
TRIM28-201ENST00000253024 H3BRM9 83 aa16.09■□□□□ 0.17
TRIM28-201ENST00000253024 SRSF1Q07955 248 aaKnown RBP eCLIP16.09■□□□□ 0.17
TRIM28-201ENST00000253024 AMTNQ6UX39 209 aa16.09■□□□□ 0.17
TRIM28-201ENST00000253024 SMIM2Q9BVW6 85 aa16.09■□□□□ 0.17
TRIM28-201ENST00000253024 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP16.08■□□□□ 0.17
TRIM28-201ENST00000253024 RPL24P83731 157 aaKnown RBP16.08■□□□□ 0.17
TRIM28-201ENST00000253024 SUMO2P61956 95 aaKnown RBP16.08■□□□□ 0.16
TRIM28-201ENST00000253024 SAMD5Q5TGI4 173 aa16.08■□□□□ 0.16
TRIM28-201ENST00000253024 CLEC2AQ6UVW9 174 aa16.08■□□□□ 0.16
TRIM28-201ENST00000253024 TRAV21A0A0B4J279 112 aa16.07■□□□□ 0.16
TRIM28-201ENST00000253024 PRM2P04554 102 aa16.07■□□□□ 0.16
TRIM28-201ENST00000253024 HIST1H4GQ99525 98 aa16.07■□□□□ 0.16
TRIM28-201ENST00000253024 CYSLTR1Q9Y271 337 aa16.07■□□□□ 0.16
TRIM28-201ENST00000253024 JMJD1CQ15652 2540 aa16.07■□□□□ 0.16
TRIM28-201ENST00000253024 IGHV4-59P01825 116 aa16.07■□□□□ 0.16
TRIM28-201ENST00000253024 SMIM13P0DJ93 91 aa16.07■□□□□ 0.16
TRIM28-201ENST00000253024 CSTL1Q9H114 145 aa16.07■□□□□ 0.16
TRIM28-201ENST00000253024 KLK9Q9UKQ9 250 aa16.07■□□□□ 0.16
TRIM28-201ENST00000253024 CD7P09564 240 aa16.06■□□□□ 0.16
TRIM28-201ENST00000253024 A0A1W2PPM0 123 aa16.06■□□□□ 0.16
TRIM28-201ENST00000253024 FAM223BA6NKX1 122 aa16.06■□□□□ 0.16
TRIM28-201ENST00000253024 RPL39P62891 51 aaKnown RBP16.06■□□□□ 0.16
TRIM28-201ENST00000253024 FAM223AQ8IWN6 122 aa16.06■□□□□ 0.16
TRIM28-201ENST00000253024 CD300EQ496F6 205 aaPredicted RBP16.05■□□□□ 0.16
TRIM28-201ENST00000253024 GTF2H5Q6ZYL4 71 aa16.05■□□□□ 0.16
TRIM28-201ENST00000253024 KLHL30-AS1Q8NEE0 82 aa16.05■□□□□ 0.16
TRIM28-201ENST00000253024 ATP5LO75964 103 aa16.05■□□□□ 0.16
TRIM28-201ENST00000253024 PSMG4Q5JS54 123 aa16.05■□□□□ 0.16
TRIM28-201ENST00000253024 ZNF256Q9Y2P7 627 aaPredicted RBP16.05■□□□□ 0.16
TRIM28-201ENST00000253024 CHD6Q8TD26 2715 aa16.05■□□□□ 0.16
TRIM28-201ENST00000253024 DUSP14O95147 198 aaKnown RBP16.05■□□□□ 0.16
TRIM28-201ENST00000253024 RNASE3P12724 160 aaKnown RBP16.05■□□□□ 0.16
TRIM28-201ENST00000253024 C2orf66Q6UXQ4 117 aa16.05■□□□□ 0.16
TRIM28-201ENST00000253024 SCGB2A2Q13296 93 aa16.04■□□□□ 0.16
TRIM28-201ENST00000253024 CHTOPQ9Y3Y2 248 aaKnown RBP16.04■□□□□ 0.16
TRIM28-201ENST00000253024 PRRC2AP48634 2157 aaKnown RBP16.04■□□□□ 0.16
TRIM28-201ENST00000253024 K7EP34 96 aa16.04■□□□□ 0.16
TRIM28-201ENST00000253024 SRSF2Q01130 221 aaKnown RBP16.04■□□□□ 0.16
TRIM28-201ENST00000253024 NDUFA4O00483 81 aa16.03■□□□□ 0.16
TRIM28-201ENST00000253024 FABP2P12104 132 aa16.03■□□□□ 0.16
TRIM28-201ENST00000253024 A0A087WX48 190 aa16.03■□□□□ 0.16
TRIM28-201ENST00000253024 ZMAT4Q9H898 229 aa16.03■□□□□ 0.16
TRIM28-201ENST00000253024 C10orf105Q8TEF2 133 aa16.02■□□□□ 0.16
TRIM28-201ENST00000253024 DPH3P1Q9H4G8 78 aa16.02■□□□□ 0.16
TRIM28-201ENST00000253024 SOCS3O14543 225 aa16.02■□□□□ 0.16
TRIM28-201ENST00000253024 PRB1P04280 392 aa16.02■□□□□ 0.16
TRIM28-201ENST00000253024 IGHV3-73A0A0B4J1V6 119 aa16.02■□□□□ 0.15
TRIM28-201ENST00000253024 OPRPNQ99935 248 aaPredicted RBP16.02■□□□□ 0.15
TRIM28-201ENST00000253024 C19orf54Q5BKX5 351 aa16.01■□□□□ 0.15
TRIM28-201ENST00000253024 UFSP1Q6NVU6 142 aa16.01■□□□□ 0.15
TRIM28-201ENST00000253024 FAM159AQ6UWV7 190 aa16.01■□□□□ 0.15
TRIM28-201ENST00000253024 IGHG2P01859 326 aa16.01■□□□□ 0.15
TRIM28-201ENST00000253024 MSMBP08118 114 aa16.01■□□□□ 0.15
TRIM28-201ENST00000253024 SPINK13Q1W4C9 94 aa16.01■□□□□ 0.15
TRIM28-201ENST00000253024 TMEM190Q8WZ59 177 aa16.01■□□□□ 0.15
TRIM28-201ENST00000253024 DAZ1Q9NQZ3 744 aaKnown RBP16.01■□□□□ 0.15
TRIM28-201ENST00000253024 ZNF469Q96JG9 3925 aaPredicted RBP16.01■□□□□ 0.15
TRIM28-201ENST00000253024 MTORP42345 2549 aa16.01■□□□□ 0.15
TRIM28-201ENST00000253024 IGHV3-64A0A075B6Q5 118 aa16■□□□□ 0.15
TRIM28-201ENST00000253024 MDFICQ9P1T7 246 aa16■□□□□ 0.15
TRIM28-201ENST00000253024 DUX3Q96PT4 197 aa16■□□□□ 0.15
TRIM28-201ENST00000253024 PRSS29PA6NIE9 313 aa15.99■□□□□ 0.15
TRIM28-201ENST00000253024 SYNJ2BPP57105 145 aa15.99■□□□□ 0.15
TRIM28-201ENST00000253024 DEFB112Q30KQ8 113 aa15.99■□□□□ 0.15
TRIM28-201ENST00000253024 CEND1Q8N111 149 aa15.99■□□□□ 0.15
TRIM28-201ENST00000253024 ACANP16112 2415 aa15.99■□□□□ 0.15
TRIM28-201ENST00000253024 OVOL1O14753 267 aa15.99■□□□□ 0.15
TRIM28-201ENST00000253024 DEFB136Q30KP8 78 aa15.99■□□□□ 0.15
TRIM28-201ENST00000253024 OR11H12B2RN74 326 aa15.99■□□□□ 0.15
TRIM28-201ENST00000253024 K7ERU9 68 aa15.99■□□□□ 0.15
TRIM28-201ENST00000253024 TGFAP01135 160 aa15.99■□□□□ 0.15
TRIM28-201ENST00000253024 SCGB1D4Q6XE38 83 aa15.99■□□□□ 0.15
TRIM28-201ENST00000253024 OR11H1Q8NG94 326 aa15.99■□□□□ 0.15
TRIM28-201ENST00000253024 OR11H2Q8NH07 326 aa15.99■□□□□ 0.15
TRIM28-201ENST00000253024 A6NDX4 124 aa15.98■□□□□ 0.15
TRIM28-201ENST00000253024 H3BMG7 143 aa15.98■□□□□ 0.15
TRIM28-201ENST00000253024 BAALCQ8WXS3 180 aa15.98■□□□□ 0.15
TRIM28-201ENST00000253024 TP53TG1Q9Y2A0 90 aa15.98■□□□□ 0.15
TRIM28-201ENST00000253024 F8VRH5 84 aa15.98■□□□□ 0.15
TRIM28-201ENST00000253024 MRPL53Q96EL3 112 aaKnown RBP15.98■□□□□ 0.15
TRIM28-201ENST00000253024 SIVA1O15304 175 aa15.97■□□□□ 0.15
TRIM28-201ENST00000253024 PLEKHB2Q96CS7 222 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms