RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 MSRB1Q9NZV6 116 aa13.39□□□□□ -0.27
VIM-201ENST00000224237 FBN1P35555 2871 aaKnown RBP13.38□□□□□ -0.27
VIM-201ENST00000224237 RBMY1BA6NDE4 496 aaKnown RBP13.38□□□□□ -0.27
VIM-201ENST00000224237 RBMY1EA6NEQ0 496 aaKnown RBP13.38□□□□□ -0.27
VIM-201ENST00000224237 GNRH2O43555 120 aa13.38□□□□□ -0.27
VIM-201ENST00000224237 RBMY1DP0C7P1 496 aaKnown RBP13.38□□□□□ -0.27
VIM-201ENST00000224237 CTAG1AP78358 180 aa13.38□□□□□ -0.27
VIM-201ENST00000224237 AMN1Q8IY45 258 aa13.38□□□□□ -0.27
VIM-201ENST00000224237 SCRT2Q9NQ03 307 aa13.38□□□□□ -0.27
VIM-201ENST00000224237 RNASE3P12724 160 aaKnown RBP13.38□□□□□ -0.27
VIM-201ENST00000224237 DMRTA1Q5VZB9 504 aa13.38□□□□□ -0.27
VIM-201ENST00000224237 STHQ8IWL8 128 aa13.38□□□□□ -0.27
VIM-201ENST00000224237 PHLDA3Q9Y5J5 127 aa13.38□□□□□ -0.27
VIM-201ENST00000224237 IGHV1OR15-1A0A075B7D0 117 aa13.37□□□□□ -0.27
VIM-201ENST00000224237 CRXO43186 299 aaPredicted RBP13.37□□□□□ -0.27
VIM-201ENST00000224237 SCGB1D1O95968 90 aa13.37□□□□□ -0.27
VIM-201ENST00000224237 CD7P09564 240 aa13.37□□□□□ -0.27
VIM-201ENST00000224237 FXYD7P58549 80 aa13.37□□□□□ -0.27
VIM-201ENST00000224237 BEAN1Q3B7T3 259 aa13.37□□□□□ -0.27
VIM-201ENST00000224237 SMIM15Q7Z3B0 74 aa13.37□□□□□ -0.27
VIM-201ENST00000224237 PRIMA1Q86XR5 153 aa13.37□□□□□ -0.27
VIM-201ENST00000224237 TIMM8BQ9Y5J9 83 aaPredicted RBP13.37□□□□□ -0.27
VIM-201ENST00000224237 INSL3P51460 131 aa13.36□□□□□ -0.27
VIM-201ENST00000224237 RCHY1Q96PM5 261 aa13.36□□□□□ -0.27
VIM-201ENST00000224237 MRPL51Q4U2R6 128 aaKnown RBP13.35□□□□□ -0.27
VIM-201ENST00000224237 Q6ZWC4 215 aa13.35□□□□□ -0.27
VIM-201ENST00000224237 ZNF664Q8N3J9 261 aa13.35□□□□□ -0.27
VIM-201ENST00000224237 C9orf66Q5T8R8 295 aa13.34□□□□□ -0.27
VIM-201ENST00000224237 TRPT1Q86TN4 253 aaKnown RBP13.34□□□□□ -0.27
VIM-201ENST00000224237 ORMDL3Q8N138 153 aa13.34□□□□□ -0.27
VIM-201ENST00000224237 D6R8Y8 96 aa13.33□□□□□ -0.27
VIM-201ENST00000224237 M0R381 172 aa13.33□□□□□ -0.27
VIM-201ENST00000224237 Q8N1Y9 231 aa13.33□□□□□ -0.27
VIM-201ENST00000224237 C20orf144Q9BQM9 153 aa13.33□□□□□ -0.27
VIM-201ENST00000224237 U3KQK5 164 aa13.33□□□□□ -0.27
VIM-201ENST00000224237 NOTCH3Q9UM47 2321 aa13.33□□□□□ -0.28
VIM-201ENST00000224237 IGHV3-16A0A0C4DH30 117 aa13.33□□□□□ -0.28
VIM-201ENST00000224237 RBMY1A1P0DJD3 496 aaKnown RBP13.33□□□□□ -0.28
VIM-201ENST00000224237 RBMY1CP0DJD4 496 aa13.33□□□□□ -0.28
VIM-201ENST00000224237 RAB4AP20338 218 aa13.33□□□□□ -0.28
VIM-201ENST00000224237 EVI2AP22794 236 aa13.33□□□□□ -0.28
VIM-201ENST00000224237 AMTP48728 403 aa13.33□□□□□ -0.28
VIM-201ENST00000224237 RBMY1FQ15415 496 aaKnown RBP13.33□□□□□ -0.28
VIM-201ENST00000224237 RNF185Q96GF1 192 aa13.33□□□□□ -0.28
VIM-201ENST00000224237 TRGV11A0A075B6L2 103 aa13.32□□□□□ -0.28
VIM-201ENST00000224237 NXPH4O95158 308 aa13.32□□□□□ -0.28
VIM-201ENST00000224237 INSP01308 110 aa13.32□□□□□ -0.28
VIM-201ENST00000224237 NUTF2P61970 127 aaKnown RBP13.32□□□□□ -0.28
VIM-201ENST00000224237 PPBPP02775 128 aa13.31□□□□□ -0.28
VIM-201ENST00000224237 DDTP30046 118 aa13.31□□□□□ -0.28
VIM-201ENST00000224237 CKS2P33552 79 aa13.31□□□□□ -0.28
VIM-201ENST00000224237 C9orf85Q96MD7 179 aa13.31□□□□□ -0.28
VIM-201ENST00000224237 PRO1933Q9H354 126 aa13.31□□□□□ -0.28
VIM-201ENST00000224237 C19orf73Q9NVV2 129 aa13.31□□□□□ -0.28
VIM-201ENST00000224237 PRELID3AQ96N28 172 aa13.31□□□□□ -0.28
VIM-201ENST00000224237 TRRAPQ9Y4A5 3859 aa13.3□□□□□ -0.28
VIM-201ENST00000224237 CBY3A6NI87 242 aa13.3□□□□□ -0.28
VIM-201ENST00000224237 DEFA6Q01524 100 aa13.3□□□□□ -0.28
VIM-201ENST00000224237 AP1S3Q96PC3 154 aa13.3□□□□□ -0.28
VIM-201ENST00000224237 STAB1Q9NY15 2570 aa13.3□□□□□ -0.28
VIM-201ENST00000224237 SPRY2O43597 315 aa13.29□□□□□ -0.28
VIM-201ENST00000224237 RNASEKQ6P5S7 137 aaKnown RBP13.29□□□□□ -0.28
VIM-201ENST00000224237 NIT1Q86X76 327 aa13.29□□□□□ -0.28
VIM-201ENST00000224237 MCRIP2Q9BUT9 160 aaKnown RBP13.29□□□□□ -0.28
VIM-201ENST00000224237 MDFICQ9P1T7 246 aa13.29□□□□□ -0.28
VIM-201ENST00000224237 HSBP1O75506 76 aa13.29□□□□□ -0.28
VIM-201ENST00000224237 CHCHD1Q96BP2 118 aaKnown RBP13.29□□□□□ -0.28
VIM-201ENST00000224237 LINC00467Q9BRT7 94 aa13.29□□□□□ -0.28
VIM-201ENST00000224237 LAMTOR2Q9Y2Q5 125 aa13.29□□□□□ -0.28
VIM-201ENST00000224237 PMCHP20382 165 aa13.28□□□□□ -0.28
VIM-201ENST00000224237 WFDC10AQ9H1F0 79 aa13.28□□□□□ -0.28
VIM-201ENST00000224237 DPH3P1Q9H4G8 78 aa13.28□□□□□ -0.28
VIM-201ENST00000224237 TEX43Q6ZNM6 134 aa13.27□□□□□ -0.28
VIM-201ENST00000224237 SYT8Q8NBV8 401 aa13.27□□□□□ -0.28
VIM-201ENST00000224237 URB1-AS1Q96HZ7 61 aa13.27□□□□□ -0.28
VIM-201ENST00000224237 XCL2Q9UBD3 114 aa13.27□□□□□ -0.28
VIM-201ENST00000224237 SMKR1H3BMG3 65 aa13.27□□□□□ -0.29
VIM-201ENST00000224237 NCR2O95944 276 aa13.27□□□□□ -0.29
VIM-201ENST00000224237 LINC00614P0C842 121 aa13.27□□□□□ -0.29
VIM-201ENST00000224237 GTSCR1Q86UQ5 136 aa13.27□□□□□ -0.29
VIM-201ENST00000224237 LINC01587Q99440 93 aa13.27□□□□□ -0.29
VIM-201ENST00000224237 ZNF747Q9BV97 191 aa13.27□□□□□ -0.29
VIM-201ENST00000224237 MUC4Q99102 2169 aa13.27□□□□□ -0.29
VIM-201ENST00000224237 HTN1P15515 57 aa13.26□□□□□ -0.29
VIM-201ENST00000224237 FAM19A2Q8N3H0 131 aa13.26□□□□□ -0.29
VIM-201ENST00000224237 C14orf178Q8N769 122 aaPredicted RBP13.26□□□□□ -0.29
VIM-201ENST00000224237 WFDC9Q8NEX5 89 aa13.26□□□□□ -0.29
VIM-201ENST00000224237 KRTDAPP60985 99 aa13.25□□□□□ -0.29
VIM-201ENST00000224237 MRAP2Q96G30 205 aa13.25□□□□□ -0.29
VIM-201ENST00000224237 NPYP01303 97 aa13.25□□□□□ -0.29
VIM-201ENST00000224237 SMIM17P0DL12 118 aa13.25□□□□□ -0.29
VIM-201ENST00000224237 PRSS3P2Q8NHM4 247 aa13.25□□□□□ -0.29
VIM-201ENST00000224237 C14orf144Q96I85 54 aa13.25□□□□□ -0.29
VIM-201ENST00000224237 ZNF415Q09FC8 603 aa13.24□□□□□ -0.29
VIM-201ENST00000224237 TMEM208Q9BTX3 173 aa13.24□□□□□ -0.29
VIM-201ENST00000224237 KIR2DL5BA0A0G2JN68 375 aa13.23□□□□□ -0.29
VIM-201ENST00000224237 KIR2DL5BA0A0G2JPC4 375 aa13.23□□□□□ -0.29
VIM-201ENST00000224237 MORN3Q6PF18 240 aaPredicted RBP13.23□□□□□ -0.29
VIM-201ENST00000224237 FA2HQ7L5A8 372 aa13.23□□□□□ -0.29
VIM-201ENST00000224237 KIR2DL5AQ8N109 375 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms