RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 SNCBQ16143 134 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 RTL8BQ17RB0 113 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 KRTAP19-8Q3LI54 63 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 KRTAP20-2Q3LI61 65 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 SCGB2B2Q4G0G5 96 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 AKR1C8PQ5T2L2 129 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 DHRS4L2Q6PKH6 230 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 C3orf62Q6ZUJ4 267 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 OR5A2Q8NGI9 324 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 CLEC2BQ92478 149 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 DGCR14Q96DF8 476 aaKnown RBP-0.31□□□□□ -2.46
VPS35-212ENST00000640313 BORCS8Q96FH0 119 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 BTF3L4Q96K17 158 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 Q96NJ1 140 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 PRR15LQ9BU68 103 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 CNFNQ9BYD5 112 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 ATG5Q9H1Y0 275 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 PARVGQ9HBI0 331 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 ENY2Q9NPA8 101 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 LYRM2Q9NU23 88 aaPredicted RBP-0.31□□□□□ -2.46
VPS35-212ENST00000640313 SS18L2Q9UHA2 77 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 PYCARDQ9ULZ3 195 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 FAM32AQ9Y421 112 aaKnown RBP-0.31□□□□□ -2.46
VPS35-212ENST00000640313 MYLKQ15746 1914 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 CD109Q6YHK3 1445 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 KIAA1107Q9UPP5 1409 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 ITPR3Q14573 2671 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 PCF11O94913 1555 aaKnown RBP-0.32□□□□□ -2.46
VPS35-212ENST00000640313 CDK13Q14004 1512 aaKnown RBP-0.32□□□□□ -2.46
VPS35-212ENST00000640313 PRRC2CQ9Y520 2896 aaKnown RBP-0.32□□□□□ -2.46
VPS35-212ENST00000640313 DOCK11Q5JSL3 2073 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 ARL5CA6NH57 179 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 IFITM5A6NNB3 132 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 BBIP1A8MTZ0 92 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 C9JAW5 83 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 MCRIP1C9JLW8 97 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 G3V2T6 193 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 H3BQV1 296 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 ATP5HO75947 161 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 TFF1P04155 84 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 SAA1P0DJI8 122 aaPredicted RBP-0.32□□□□□ -2.46
VPS35-212ENST00000640313 BCL2P10415 239 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 IL7P13232 177 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 TPT1P13693 172 aaKnown RBP-0.32□□□□□ -2.46
VPS35-212ENST00000640313 HSD11B1P28845 292 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 GLRXP35754 106 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 RPL35P42766 123 aaKnown RBP-0.32□□□□□ -2.46
VPS35-212ENST00000640313 GTF2A1P52655 376 aaPredicted RBP-0.32□□□□□ -2.46
VPS35-212ENST00000640313 MAXP61244 160 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 WFDC2Q14508 124 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 MORN4Q8NDC4 146 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 OR4B1Q8NGF8 309 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 OR5AK2Q8NH90 309 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 PRELID3AQ96N28 172 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 MCEEQ96PE7 176 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 DSCR8Q96T75 97 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 GINS3Q9BRX5 216 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 BPESC1Q9GZL8 116 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 BIN3Q9NQY0 253 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 SSR3Q9UNL2 185 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 NUBP2Q9Y5Y2 271 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 ZFHX3Q15911 3703 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 PTPRGP23470 1445 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 UHRF1BP1Q6BDS2 1440 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 TRAPPC8Q9Y2L5 1435 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 HIVEP1P15822 2718 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 UNC13BO14795 1591 aa-0.32□□□□□ -2.46
VPS35-212ENST00000640313 VPS13BQ7Z7G8 4022 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 KIAA0100Q14667 2235 aaKnown RBP-0.33□□□□□ -2.46
VPS35-212ENST00000640313 KIF1BO60333 1816 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 PLCE1Q9P212 2302 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 TRAV12-2A0A075B6T6 113 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 TRBV10-1A0A0K0K1A3 114 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 TEX49A0A1B0GTD5 131 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 A0A1B0GW64 132 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 TRDV1A0A1B0GX56 115 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 ZNF815PA8K554 130 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 G3V318 75 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 H3BMG7 143 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 GABARAPH6UMI1 98 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 OR2H2O95918 312 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 CFDP00746 253 aaPredicted RBP-0.33□□□□□ -2.46
VPS35-212ENST00000640313 HBDP02042 147 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 MT-ND6P03923 174 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 FABP2P12104 132 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 SPRR1AP35321 89 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 CRYBA4P53673 196 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 GNG3P63215 75 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 FADDQ13158 208 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 INSL4Q14641 139 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 SPA17Q15506 151 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 IQCJQ1A5X6 159 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 DEFB109BQ30KR1 87 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 Q5VSD8 79 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 OR2T2Q6IF00 324 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 HRCT1Q6UXD1 115 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 Q6ZRX8 168 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 SSBP3-AS1Q7Z2R9 100 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 LINC00305Q7Z4B0 112 aa-0.33□□□□□ -2.46
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms