RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 FBLL1A6NHQ2 334 aaKnown RBP13.08□□□□□ -0.32
CCDC28A-203ENST00000617445 NXPH4O95158 308 aa13.08□□□□□ -0.32
CCDC28A-203ENST00000617445 CXorf1O96002 111 aa13.08□□□□□ -0.32
CCDC28A-203ENST00000617445 GCHFRP30047 84 aa13.08□□□□□ -0.32
CCDC28A-203ENST00000617445 PCNPQ8WW12 178 aaKnown RBP13.08□□□□□ -0.32
CCDC28A-203ENST00000617445 TVP23CQ96ET8 276 aa13.08□□□□□ -0.32
CCDC28A-203ENST00000617445 ZNF479Q96JC4 524 aa13.08□□□□□ -0.32
CCDC28A-203ENST00000617445 ACTR3CQ9C0K3 210 aaPredicted RBP13.08□□□□□ -0.32
CCDC28A-203ENST00000617445 TRAV8-1A0A0A6YYK1 113 aa13.07□□□□□ -0.32
CCDC28A-203ENST00000617445 K7EP13 123 aa13.07□□□□□ -0.32
CCDC28A-203ENST00000617445 GNRH2O43555 120 aa13.07□□□□□ -0.32
CCDC28A-203ENST00000617445 TCRAP04437 139 aa13.07□□□□□ -0.32
CCDC28A-203ENST00000617445 SRIP30626 198 aa13.07□□□□□ -0.32
CCDC28A-203ENST00000617445 GNG5P63218 68 aa13.07□□□□□ -0.32
CCDC28A-203ENST00000617445 TRAV9-2A0A087WT02 112 aa13.06□□□□□ -0.32
CCDC28A-203ENST00000617445 FXYD6-FXYD2A0A087WZ82 144 aa13.06□□□□□ -0.32
CCDC28A-203ENST00000617445 BORCS7-ASMTA0A0B4J1R7 106 aa13.06□□□□□ -0.32
CCDC28A-203ENST00000617445 C9JCJ5 164 aa13.06□□□□□ -0.32
CCDC28A-203ENST00000617445 CDK2AP2O75956 126 aa13.06□□□□□ -0.32
CCDC28A-203ENST00000617445 SFTA3P0C7M3 94 aa13.06□□□□□ -0.32
CCDC28A-203ENST00000617445 SH2D6Q7Z4S9 175 aa13.06□□□□□ -0.32
CCDC28A-203ENST00000617445 OR4C5Q8NGB2 326 aa13.06□□□□□ -0.32
CCDC28A-203ENST00000617445 TXNDC17Q9BRA2 123 aa13.06□□□□□ -0.32
CCDC28A-203ENST00000617445 F6UZH7 168 aa13.05□□□□□ -0.32
CCDC28A-203ENST00000617445 K7EQD1 137 aa13.05□□□□□ -0.32
CCDC28A-203ENST00000617445 TAAR5O14804 337 aa13.05□□□□□ -0.32
CCDC28A-203ENST00000617445 CIDEAO60543 219 aa13.05□□□□□ -0.32
CCDC28A-203ENST00000617445 TYMSP04818 313 aa13.05□□□□□ -0.32
CCDC28A-203ENST00000617445 LINC00315P59091 139 aa13.05□□□□□ -0.32
CCDC28A-203ENST00000617445 RNF222A6NCQ9 220 aa13.04□□□□□ -0.32
CCDC28A-203ENST00000617445 GYPEP15421 78 aa13.04□□□□□ -0.32
CCDC28A-203ENST00000617445 SUMO1P63165 101 aaKnown RBP13.04□□□□□ -0.32
CCDC28A-203ENST00000617445 SPATA12Q7Z6I5 190 aa13.04□□□□□ -0.32
CCDC28A-203ENST00000617445 EPDR1Q9UM22 224 aa13.04□□□□□ -0.32
CCDC28A-203ENST00000617445 PSG8Q9UQ74 426 aa13.04□□□□□ -0.32
CCDC28A-203ENST00000617445 A0A1W2PRE2 83 aa13.03□□□□□ -0.32
CCDC28A-203ENST00000617445 ZFP69Q49AA0 526 aa13.03□□□□□ -0.32
CCDC28A-203ENST00000617445 SAPCD1Q5SSQ6 148 aa13.03□□□□□ -0.32
CCDC28A-203ENST00000617445 NFE4Q86UQ8 179 aa13.03□□□□□ -0.32
CCDC28A-203ENST00000617445 CYB561D1Q8N8Q1 229 aa13.03□□□□□ -0.32
CCDC28A-203ENST00000617445 TMEM75Q8N9X5 138 aa13.03□□□□□ -0.32
CCDC28A-203ENST00000617445 SH3BGRL3Q9H299 93 aa13.03□□□□□ -0.32
CCDC28A-203ENST00000617445 G3V3Q6 166 aa13.02□□□□□ -0.33
CCDC28A-203ENST00000617445 PFN1P07737 140 aaKnown RBP13.02□□□□□ -0.33
CCDC28A-203ENST00000617445 FLI1Q01543 452 aaPredicted RBP13.02□□□□□ -0.33
CCDC28A-203ENST00000617445 SMUG1Q53HV7 270 aa13.02□□□□□ -0.33
CCDC28A-203ENST00000617445 RPL7L1Q6DKI1 246 aaKnown RBP13.02□□□□□ -0.33
CCDC28A-203ENST00000617445 SGK494Q96LW2 274 aa13.02□□□□□ -0.33
CCDC28A-203ENST00000617445 LY96Q9Y6Y9 160 aa13.02□□□□□ -0.33
CCDC28A-203ENST00000617445 GGTLC3B5MD39 225 aa13.01□□□□□ -0.33
CCDC28A-203ENST00000617445 IGLV2-11P01706 119 aa13.01□□□□□ -0.33
CCDC28A-203ENST00000617445 Q6ZRN7 208 aaPredicted RBP13.01□□□□□ -0.33
CCDC28A-203ENST00000617445 PTH2Q96A98 100 aa13.01□□□□□ -0.33
CCDC28A-203ENST00000617445 NKX6-2Q9C056 277 aaPredicted RBP13.01□□□□□ -0.33
CCDC28A-203ENST00000617445 BOLA1Q9Y3E2 137 aa13.01□□□□□ -0.33
CCDC28A-203ENST00000617445 CTXND1A0A1B0GTU2 59 aa13□□□□□ -0.33
CCDC28A-203ENST00000617445 EREGO14944 169 aa13□□□□□ -0.33
CCDC28A-203ENST00000617445 GCGP01275 180 aa13□□□□□ -0.33
CCDC28A-203ENST00000617445 EVI2AP22794 236 aa13□□□□□ -0.33
CCDC28A-203ENST00000617445 TIRAPP58753 221 aa13□□□□□ -0.33
CCDC28A-203ENST00000617445 ZNF876PQ49A33 203 aa13□□□□□ -0.33
CCDC28A-203ENST00000617445 GATA1P15976 413 aaPredicted RBP12.99□□□□□ -0.33
CCDC28A-203ENST00000617445 PPT1P50897 306 aa12.99□□□□□ -0.33
CCDC28A-203ENST00000617445 ZNF80P51504 273 aaPredicted RBP12.99□□□□□ -0.33
CCDC28A-203ENST00000617445 PRNTQ86SH4 94 aa12.99□□□□□ -0.33
CCDC28A-203ENST00000617445 ARPC5O15511 151 aa12.98□□□□□ -0.33
CCDC28A-203ENST00000617445 DNAH10OSP0CZ25 163 aa12.98□□□□□ -0.33
CCDC28A-203ENST00000617445 AKR1C8PQ5T2L2 129 aa12.98□□□□□ -0.33
CCDC28A-203ENST00000617445 C9orf85Q96MD7 179 aa12.98□□□□□ -0.33
CCDC28A-203ENST00000617445 PGPEP1Q9NXJ5 209 aa12.98□□□□□ -0.33
CCDC28A-203ENST00000617445 C11orf21Q9P2W6 132 aa12.98□□□□□ -0.33
CCDC28A-203ENST00000617445 RS1O15537 224 aa12.97□□□□□ -0.33
CCDC28A-203ENST00000617445 ERVFC1-1P60608 527 aa12.97□□□□□ -0.33
CCDC28A-203ENST00000617445 C10orf126Q8N4M7 172 aa12.97□□□□□ -0.33
CCDC28A-203ENST00000617445 PRADC1Q9BSG0 188 aa12.97□□□□□ -0.33
CCDC28A-203ENST00000617445 TRBV6-4A0A1B0GX49 114 aa12.96□□□□□ -0.33
CCDC28A-203ENST00000617445 IFNA7P01567 189 aa12.96□□□□□ -0.33
CCDC28A-203ENST00000617445 KRTAP10-2P60368 255 aa12.96□□□□□ -0.33
CCDC28A-203ENST00000617445 ZNF726P1Q15940 193 aa12.96□□□□□ -0.33
CCDC28A-203ENST00000617445 CFAP126Q5VTH2 177 aa12.96□□□□□ -0.33
CCDC28A-203ENST00000617445 NHLRC2Q8NBF2 726 aa12.96□□□□□ -0.33
CCDC28A-203ENST00000617445 HIST1H2BAQ96A08 127 aa12.96□□□□□ -0.33
CCDC28A-203ENST00000617445 MSRB1Q9NZV6 116 aa12.96□□□□□ -0.33
CCDC28A-203ENST00000617445 PCLOQ9Y6V0 5065 aa12.95□□□□□ -0.34
CCDC28A-203ENST00000617445 FABP5P3A8MUU1 101 aa12.95□□□□□ -0.34
CCDC28A-203ENST00000617445 RHOHQ15669 191 aa12.95□□□□□ -0.34
CCDC28A-203ENST00000617445 PIK3CD-AS1Q5SR53 167 aa12.95□□□□□ -0.34
CCDC28A-203ENST00000617445 WFDC10BQ8IUB3 73 aa12.95□□□□□ -0.34
CCDC28A-203ENST00000617445 SMLR1H3BR10 107 aa12.94□□□□□ -0.34
CCDC28A-203ENST00000617445 ZNF345Q14585 488 aa12.94□□□□□ -0.34
CCDC28A-203ENST00000617445 CDPF1Q6NVV7 123 aa12.94□□□□□ -0.34
CCDC28A-203ENST00000617445 SLC25A29Q8N8R3 303 aa12.94□□□□□ -0.34
CCDC28A-203ENST00000617445 RYR1P21817 5038 aa12.94□□□□□ -0.34
CCDC28A-203ENST00000617445 LRP1BQ9NZR2 4599 aa12.93□□□□□ -0.34
CCDC28A-203ENST00000617445 LOC100131303A0A0U1RQF7 123 aa12.93□□□□□ -0.34
CCDC28A-203ENST00000617445 FAM74A7A6NL05 159 aa12.93□□□□□ -0.34
CCDC28A-203ENST00000617445 HMSDA8MTL9 139 aa12.93□□□□□ -0.34
CCDC28A-203ENST00000617445 PEX7O00628 323 aa12.93□□□□□ -0.34
CCDC28A-203ENST00000617445 MGST1P10620 155 aaKnown RBP12.93□□□□□ -0.34
CCDC28A-203ENST00000617445 RNASE3P12724 160 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms